Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0024401

Physical Location & Seq

Genomic Coordinates Reverse (-)

2188860 .. 2189467

Gene Structure 608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGCCTTCTCCAAGCATGACCAAGCATAGAACGAGCTGTGTGAAAATTTTTGGGGTCGAATTGTGCCCTGACAATGTGGCTGTTGCCATGGTATTTTGTTCAAGGTGTCCTAGGCCTTGCAGGGCTTGCTGTCGGTTTTTAACTTTCCATTTAAAAGACGACTTGCATCTCGACCTGGCTGAGGCGAACTGCTATTATAGTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0006855 GO:0008150 GO:0008509 GO:0008514 GO:0008517 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015231 GO:0015238 GO:0015318 GO:0015350 GO:0015711 GO:0015849 GO:0015884 GO:0015885 GO:0015893 GO:0022857 GO:0031967 GO:0031975 GO:0034220 GO:0035461 GO:0042221 GO:0042493 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051180 GO:0051181 GO:0051234 GO:0051958 GO:0055085 GO:0071702 GO:0071705 GO:0072337 GO:0072349 GO:0090482 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BT1

Protein Analysis

69

Amino Acids

7.71

Weight (kDa)

7.56

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024401)

Species	Orthologous Gene IDs
malus_domestica	MD07G1115300.v1.1 MD08G1122400.v1.1
pyrus_communis	pycom08g02850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	102
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	1 cut(s)	36
AluI	AGCT	1 cut(s)	36
AoxI	GGCC	1 cut(s)	113
ApoI	RAATTY	1 cut(s)	45
AspA2I	CCTAGG	1 cut(s)	110
AvrII	CCTAGG	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	68
BbvCI	CCTCAGC	1 cut(s)	180
BciT130I	CCWGG	1 cut(s)	176
BfaI	CTAG	1 cut(s)	111
BlnI	CCTAGG	1 cut(s)	110
Bme1390I	CCNGG	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	1 cut(s)	175
Bpu10I	CCTNAGC	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	87, 110
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	2 cut(s)	87, 110
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	171
BseSI	GKGCMC	1 cut(s)	68
BshFI	GGCC	1 cut(s)	115
BslI	CCNNNNNNNGG	1 cut(s)	181
BsnI	GGCC	1 cut(s)	115
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp19I	CCATGG	1 cut(s)	87
BspANI	GGCC	1 cut(s)	115
BspCNI	CTCAG	1 cut(s)	172
BssECI	CCNNGG	2 cut(s)	87, 110
BssT1I	CCWWGG	2 cut(s)	87, 110
Bst2UI	CCWGG	1 cut(s)	176
BstAPI	GCANNNNNTGC	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	1 cut(s)	180
BstDSI	CCRYGG	1 cut(s)	87
BstENI	CCTNNNNNAGG	1 cut(s)	179
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNI	CCWGG	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	174
BstSLI	GKGCMC	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	115
BtgI	CCRYGG	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	127
CviAII	CATG	2 cut(s)	16, 88
CviJI	RGCY	5 cut(s)	36, 80, 115, 125, 179
CviKI_1	RGCY	5 cut(s)	36, 80, 115, 125, 179
DdeI	CTNAG	1 cut(s)	180
DraI	TTTAAA	1 cut(s)	153
Eco130I	CCWWGG	2 cut(s)	87, 110
Eco147I	AGGCCT	1 cut(s)	115
EcoNI	CCTNNNNNAGG	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	2 cut(s)	87, 110
ErhI	CCWWGG	2 cut(s)	87, 110
FaeI	CATG	2 cut(s)	19, 91
FaiI	YATR	4 cut(s)	17, 27, 89, 198
FatI	CATG	2 cut(s)	15, 87
FspBI	CTAG	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	115
Hin1II	CATG	2 cut(s)	19, 91
Hpy188III	TCNNGA	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	120, 166
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	1 cut(s)	180
Hsp92II	CATG	2 cut(s)	19, 91
LpnPI	CCDG	4 cut(s)	81, 106, 161, 188
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	200
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	2 cut(s)	45, 59
MnlI	CCTC	1 cut(s)	175
MseI	TTAA	2 cut(s)	140, 152
MspR9I	CCNGG	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	1 cut(s)	126
NcoI	CCATGG	1 cut(s)	87
NlaIII	CATG	2 cut(s)	19, 91
NmuCI	GTSAC	1 cut(s)	200
PceI	AGGCCT	1 cut(s)	115
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
SaqAI	TTAA	2 cut(s)	140, 152
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	3 cut(s)	38, 107, 177
SfaNI	GCATC	1 cut(s)	175
Sse9I	AATT	2 cut(s)	45, 59
SseBI	AGGCCT	1 cut(s)	115
SspMI	CTAG	1 cut(s)	111
StuI	AGGCCT	1 cut(s)	115
StyD4I	CCNGG	1 cut(s)	174
StyI	CCWWGG	2 cut(s)	87, 110
TaqI	TCGA	2 cut(s)	57, 171
TasI	AATT	2 cut(s)	45, 59
Tru1I	TTAA	2 cut(s)	140, 152
Tru9I	TTAA	2 cut(s)	140, 152
TseFI	GTSAC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	200
XagI	CCTNNNNNAGG	1 cut(s)	179
XapI	RAATTY	1 cut(s)	45
XmaJI	CCTAGG	1 cut(s)	110
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.