Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2512187 .. 2512719

Gene Structure 533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCCGTACCTGGGTGCTGTTTTCCATGAAACTTTAAGGAAGTACAGTCCAGTTCCTATAGTTCCTCCTAGATATGTGCACGAAGATACCCAATTAGGCGGTTACTATGTTCCTGCCGGAACAGAGATTGCCATTAACATATACGGGTGCAACATGGACAAGAACCGATGGGAAAGCCCGGAAGAATGGAAGCCAGAGAGGTTTTTGGAACCAAAACACGACCCGATGGATTTGTACAAGACCATGGCATTTGGAGGCGGAAAGAGGGTGTGTGCTGGTTCACTTCAGGCAATGCTGATAGCGTGCACCTCCATTGGAAGGTTGGTGCAGCAGTTTGAGTGGAAGCTGAGACATGGAGAGGAAGAAAATGTGGCCACTGTTGGGCTCACCACTCGCAAACTCAATCCAATGCATGCAATCCTCAAACCGAGAAATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009403 GO:0009404 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009685 GO:0009686 GO:0009707 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009941 GO:0009987 GO:0010033 GO:0010241 GO:0010476 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0019867 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032870 GO:0033331 GO:0033993 GO:0042170 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051501 GO:0051502 GO:0051716 GO:0052314 GO:0052315 GO:0052615 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0098588 GO:0098805 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

147

Amino Acids

16.73

Weight (kDa)

8.43

Isoelectric Point (pI)

58.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	1 - 123	2.5e-36	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	99, 258
AcoI	YGGCCR	1 cut(s)	372
AcuI	CTGAAG	1 cut(s)	269
AfaI	GTAC	3 cut(s)	8, 44, 236
AfiI	CCNNNNNNNGG	3 cut(s)	11, 318, 381
AjnI	CCWGG	1 cut(s)	9
AluBI	AGCT	1 cut(s)	346
AluI	AGCT	1 cut(s)	346
Alw21I	GWGCWC	2 cut(s)	81, 308
Alw26I	GTCTC	1 cut(s)	343
Alw44I	GTGCAC	2 cut(s)	77, 304
AoxI	GGCC	1 cut(s)	372
ApaLI	GTGCAC	2 cut(s)	77, 304
ApeKI	GCWGC	1 cut(s)	328
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	379
BaeGI	GKGCMC	2 cut(s)	81, 308
BalI	TGGCCA	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	387
Bbv12I	GWGCWC	2 cut(s)	81, 308
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	2 cut(s)	162, 220
BciT130I	CCWGG	1 cut(s)	11
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	343
BfaI	CTAG	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	57
BisI	GCNGC	1 cut(s)	329
BlsI	GCNGC	1 cut(s)	330
Bme1390I	CCNGG	2 cut(s)	11, 179
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	2 cut(s)	11, 179
BpuMI	CCSGG	1 cut(s)	179
BsaJI	CCNNGG	2 cut(s)	10, 243
Bsc4I	CCNNNNNNNGG	3 cut(s)	11, 318, 381
Bse1I	ACTGG	1 cut(s)	50
Bse3DI	GCAATG	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	11
BseDI	CCNNGG	2 cut(s)	10, 243
BseLI	CCNNNNNNNGG	3 cut(s)	11, 318, 381
BseMI	GCAATG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	1 cut(s)	50
BseSI	GKGCMC	2 cut(s)	81, 308
BseXI	GCAGC	1 cut(s)	340
BsgI	GTGCAG	1 cut(s)	347
BshFI	GGCC	1 cut(s)	374
BsiHKAI	GWGCWC	2 cut(s)	81, 308
BsiSI	CCGG	2 cut(s)	117, 179
BslI	CCNNNNNNNGG	3 cut(s)	11, 318, 381
BsmAI	GTCTC	1 cut(s)	343
BsnI	GGCC	1 cut(s)	374
Bsp1286I	GDGCHC	3 cut(s)	81, 308, 387
Bsp1407I	TGTACA	1 cut(s)	234
Bsp19I	CCATGG	1 cut(s)	243
BspACI	CCGC	2 cut(s)	99, 258
BspANI	GGCC	1 cut(s)	374
BspCNI	CTCAG	1 cut(s)	339
BspLI	GGNNCC	1 cut(s)	210
BsrDI	GCAATG	1 cut(s)	297
BsrGI	TGTACA	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	50
BssECI	CCNNGG	2 cut(s)	10, 243
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	2 cut(s)	47, 379
BstAUI	TGTACA	1 cut(s)	234
BstC8I	GCNNGC	2 cut(s)	304, 414
BstDEI	CTNAG	1 cut(s)	347
BstDSI	CCRYGG	1 cut(s)	243
BstMAI	GTCTC	1 cut(s)	343
BstNI	CCWGG	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	2 cut(s)	9, 177
BstSFI	CTRYAG	1 cut(s)	57
BstSLI	GKGCMC	2 cut(s)	81, 308
BstV1I	GCAGC	1 cut(s)	340
BsuRI	GGCC	1 cut(s)	374
BtgI	CCRYGG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	2 cut(s)	304, 414
Csp6I	GTAC	3 cut(s)	7, 43, 235
CviAII	CATG	5 cut(s)	26, 154, 244, 353, 413
CviJI	RGCY	5 cut(s)	177, 193, 346, 374, 385
CviKI_1	RGCY	5 cut(s)	177, 193, 346, 374, 385
CviQI	GTAC	3 cut(s)	7, 43, 235
DdeI	CTNAG	1 cut(s)	347
EaeI	YGGCCR	1 cut(s)	372
EciI	GGCGGA	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	387
Eco57I	CTGAAG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	243
EcoT22I	ATGCAT	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	5 cut(s)	29, 157, 247, 356, 416
FatI	CATG	5 cut(s)	25, 153, 243, 352, 412
Fnu4HI	GCNGC	1 cut(s)	329
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	1 cut(s)	329
FspBI	CTAG	1 cut(s)	69
GluI	GCNGC	1 cut(s)	329
HaeIII	GGCC	1 cut(s)	374
HapII	CCGG	2 cut(s)	117, 179
Hin1II	CATG	5 cut(s)	29, 157, 247, 356, 416
HpaII	CCGG	2 cut(s)	117, 179
HphI	GGTGA	1 cut(s)	379
Hpy166II	GTNNAC	3 cut(s)	79, 281, 306
Hpy8I	GTNNAC	3 cut(s)	79, 281, 306
HpyAV	CCTTC	1 cut(s)	312
HpyCH4III	ACNGT	2 cut(s)	47, 379
HpyCH4V	TGCA	6 cut(s)	79, 150, 306, 328, 412, 416
HpyF3I	CTNAG	1 cut(s)	347
Hsp92II	CATG	5 cut(s)	29, 157, 247, 356, 416
LpnPI	CCDG	8 cut(s)	23, 63, 126, 130, 192, 207, 261, 272
Lsp1109I	GCAGC	1 cut(s)	340
MaeI	CTAG	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	101
MboII	GAAGA	3 cut(s)	95, 194, 374
MhlI	GDGCHC	3 cut(s)	81, 308, 387
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	2 cut(s)	92, 433
MluNI	TGGCCA	1 cut(s)	374
MnlI	CCTC	7 cut(s)	75, 192, 248, 258, 319, 352, 431
Mox20I	TGGCCA	1 cut(s)	374
Mph1103I	ATGCAT	1 cut(s)	414
MscI	TGGCCA	1 cut(s)	374
MseI	TTAA	2 cut(s)	35, 135
Msp20I	TGGCCA	1 cut(s)	374
MspI	CCGG	2 cut(s)	117, 179
MspR9I	CCNGG	2 cut(s)	11, 179
MvaI	CCWGG	1 cut(s)	11
NciI	CCSGG	1 cut(s)	179
NcoI	CCATGG	1 cut(s)	243
NlaIII	CATG	5 cut(s)	29, 157, 247, 356, 416
NlaIV	GGNNCC	1 cut(s)	210
NsiI	ATGCAT	1 cut(s)	414
NspI	RCATGY	1 cut(s)	416
PaeI	GCATGC	1 cut(s)	416
PkrI	GCNGC	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	210
RsaI	GTAC	3 cut(s)	8, 44, 236
RsaNI	GTAC	3 cut(s)	7, 43, 235
SaqAI	TTAA	2 cut(s)	35, 135
SatI	GCNGC	1 cut(s)	329
ScrFI	CCNGG	2 cut(s)	11, 179
SduI	GDGCHC	3 cut(s)	81, 308, 387
SetI	ASST	5 cut(s)	12, 203, 311, 323, 348
SfcI	CTRYAG	1 cut(s)	57
SphI	GCATGC	1 cut(s)	416
Sse9I	AATT	2 cut(s)	92, 433
SsiI	CCGC	2 cut(s)	99, 258
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	2 cut(s)	9, 177
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	47, 379
TasI	AATT	2 cut(s)	92, 433
TatI	WGTACW	2 cut(s)	42, 234
Tru1I	TTAA	2 cut(s)	35, 135
Tru9I	TTAA	2 cut(s)	35, 135
TscAI	CASTG	1 cut(s)	382
TseI	GCWGC	1 cut(s)	328
TspDTI	ATGAA	1 cut(s)	42
TspRI	CASTG	1 cut(s)	382
VneI	GTGCAC	2 cut(s)	77, 304
XceI	RCATGY	1 cut(s)	416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XspI	CTAG	1 cut(s)	69
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.