pycom08g03310

GDP-mannose 4,6 dehydratase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Reverse (-)
2569042 .. 2570019
978 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 510 bp
ATGATATCTTGGTTGCGAGAAGATTGTTCGGCTTTTTGTTTCAGGCTTATACGAGACTTAAGAACTAAGGTTTCGGAAAAGCCGTCCGTGGTCGGTTACAGGTTCAAACGAATCAGCGAGAAGCCAAGTGGGGAAGAAGACAAAAGAGGGAGCATTGGGAAGTACGCTAACATTGTCCCAATTATCACATTCACGCGAGTCAGAACCACATCGGGTAGGAATGTTGACCATGTGTTCAACCTCGCAGCTGATATGGATGGAATGGGCTTCATTCAGTCCAACCGTTCCGTCATCTTTTATAACAATACCATGATTACCTTCAACATGGTTGAAGCTTCACGGATCAATGATGTGAAGAGAGAAACACAAACGAAAGGAGCAGCACCTTGTGGAGTTGAAAATGAAGTAGTATTAGAAGCTGACGGGAACAACGGAACAAGACGCCTCAAAGGCCTTACATCTAAAACCCTAGACTTGTCAAGTAACCCAAAACCAGGAACAGACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko00520 ko01100 ko01110 map00053 map00520 map01100 map01110
Pfam Domains
Protein Families
Epimerase

Protein Analysis

170

Amino Acids

18.86

Weight (kDa)

9.4

Isoelectric Point (pI)

34.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 300
AccII CGCG 1 cut(s) 196
AclWI GGATC 1 cut(s) 350
AcyI GRCGYC 1 cut(s) 442
AdeI CACNNNGTG 1 cut(s) 389
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 1 cut(s) 494
AflII CTTAAG 1 cut(s) 58
AgsI TTSAA 5 cut(s) 106, 238, 322, 332, 398
AjnI CCWGG 1 cut(s) 493
AluBI AGCT 3 cut(s) 248, 335, 419
AluI AGCT 3 cut(s) 248, 335, 419
Alw26I GTCTC 1 cut(s) 48
AlwI GGATC 1 cut(s) 350
AoxI GGCC 1 cut(s) 451
ApeKI GCWGC 2 cut(s) 245, 380
BbsI GAAGAC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 257, 392
BccI CCATC 1 cut(s) 251
BceAI ACGGC 1 cut(s) 67
BciT130I CCWGG 1 cut(s) 495
BcoDI GTCTC 1 cut(s) 48
BfaI CTAG 1 cut(s) 470
BfrI CTTAAG 1 cut(s) 58
BglI GCCNNNNNGGC 1 cut(s) 450
BisI GCNGC 2 cut(s) 246, 381
BlsI GCNGC 2 cut(s) 247, 382
Bme1390I CCNGG 1 cut(s) 495
BmrFI CCNGG 1 cut(s) 495
BpiI GAAGAC 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 442
BsaJI CCNNGG 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 494
BseBI CCWGG 1 cut(s) 495
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 494
BseXI GCAGC 2 cut(s) 257, 392
Bsh1236I CGCG 1 cut(s) 196
BshFI GGCC 1 cut(s) 453
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 494
BsmAI GTCTC 1 cut(s) 48
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 1 cut(s) 453
Bsp143I GATC 1 cut(s) 342
BspANI GGCC 1 cut(s) 453
BspFNI CGCG 1 cut(s) 196
BspPI GGATC 1 cut(s) 350
BspTI CTTAAG 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 1 cut(s) 342
BssNI GRCGYC 1 cut(s) 442
Bst2UI CCWGG 1 cut(s) 495
Bst4CI ACNGT 1 cut(s) 284
Bst6I CTCTTC 1 cut(s) 350
BstACI GRCGYC 1 cut(s) 442
BstAFI CTTAAG 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 66
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 262
BstFNI CGCG 1 cut(s) 196
BstKTI GATC 1 cut(s) 345
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 1 cut(s) 342
BstMWI GCNNNNNNNGC 1 cut(s) 450
BstNI CCWGG 1 cut(s) 495
BstSCI CCNGG 1 cut(s) 493
BstUI CGCG 1 cut(s) 196
BstV1I GCAGC 2 cut(s) 257, 392
BstV2I GAAGAC 1 cut(s) 144
BsuRI GGCC 1 cut(s) 453
BtgI CCRYGG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 262
CseI GACGC 1 cut(s) 450
Csp6I GTAC 1 cut(s) 163
CviAII CATG 3 cut(s) 230, 310, 325
CviJI RGCY 9 cut(s) 32, 46, 82, 124, 248, 267, 335, 419, 453
CviKI_1 RGCY 9 cut(s) 32, 46, 82, 124, 248, 267, 335, 419, 453
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 1 cut(s) 66
DpnI GATC 1 cut(s) 344
DpnII GATC 1 cut(s) 342
DraIII CACNNNGTG 1 cut(s) 389
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco147I AGGCCT 1 cut(s) 453
Eco32I GATATC 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 493
EcoRV GATATC 1 cut(s) 6
FaeI CATG 3 cut(s) 233, 313, 328
FaiI YATR 6 cut(s) 50, 231, 254, 300, 311, 326
FaqI GGGAC 1 cut(s) 161
FatI CATG 3 cut(s) 229, 309, 324
Fnu4HI GCNGC 2 cut(s) 246, 381
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 2 cut(s) 246, 381
FspBI CTAG 1 cut(s) 470
GluI GCNGC 2 cut(s) 246, 381
HaeIII GGCC 1 cut(s) 453
HgaI GACGC 1 cut(s) 450
Hin1I GRCGYC 1 cut(s) 442
Hin1II CATG 3 cut(s) 233, 313, 328
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HindIII AAGCTT 1 cut(s) 333
HinfI GANTC 3 cut(s) 111, 198, 503
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 2 cut(s) 76, 203
Hpy188III TCNNGA 1 cut(s) 507
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 1 cut(s) 328
HpyCH4III ACNGT 1 cut(s) 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 450
HpyF3I CTNAG 1 cut(s) 66
Hsp92I GRCGYC 1 cut(s) 442
Hsp92II CATG 3 cut(s) 233, 313, 328
Kzo9I GATC 1 cut(s) 342
LmnI GCTCC 2 cut(s) 150, 377
LpnPI CCDG 3 cut(s) 28, 85, 480
Lsp1109I GCAGC 2 cut(s) 257, 392
MaeI CTAG 1 cut(s) 470
MaeIII GTNAC 2 cut(s) 95, 482
MalI GATC 1 cut(s) 344
MboI GATC 1 cut(s) 342
MboII GAAGA 4 cut(s) 32, 146, 149, 367
MluCI AATT 1 cut(s) 180
MlyI GAGTC 2 cut(s) 207, 497
MmeI TCCRAC 1 cut(s) 303
MnlI CCTC 3 cut(s) 140, 251, 455
MseI TTAA 1 cut(s) 59
MspA1I CMGCKG 1 cut(s) 248
MspCI CTTAAG 1 cut(s) 58
MspR9I CCNGG 1 cut(s) 495
MvaI CCWGG 1 cut(s) 495
MvnI CGCG 1 cut(s) 196
MwoI GCNNNNNNNGC 1 cut(s) 450
NdeII GATC 1 cut(s) 342
NlaIII CATG 3 cut(s) 233, 313, 328
PceI AGGCCT 1 cut(s) 453
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PfeI GAWTC 1 cut(s) 111
PkrI GCNGC 2 cut(s) 247, 382
PleI GAGTC 2 cut(s) 206, 497
PpsI GAGTC 2 cut(s) 206, 497
PsiI TTATAA 1 cut(s) 300
Psp6I CCWGG 1 cut(s) 493
PspGI CCWGG 1 cut(s) 493
PvuII CAGCTG 1 cut(s) 248
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 2 cut(s) 246, 381
Sau3AI GATC 1 cut(s) 342
SchI GAGTC 2 cut(s) 207, 497
ScrFI CCNGG 1 cut(s) 495
SetI ASST 8 cut(s) 72, 104, 243, 250, 320, 337, 388, 421
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 1 cut(s) 180
SseBI AGGCCT 1 cut(s) 453
SspMI CTAG 1 cut(s) 470
StuI AGGCCT 1 cut(s) 453
StyD4I CCNGG 1 cut(s) 493
TaaI ACNGT 1 cut(s) 284
TasI AATT 1 cut(s) 180
TfiI GAWTC 1 cut(s) 111
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TseI GCWGC 2 cut(s) 245, 380
TspDTI ATGAA 2 cut(s) 259, 417
TspGWI ACGGA 4 cut(s) 76, 277, 355, 447
Vha464I CTTAAG 1 cut(s) 58
XspI CTAG 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.