Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2808482 .. 2824800

Gene Structure 16319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCGGCGGGGTCGTCTTCTGAGTTGGGTCCCGGAATCGAAGAGAACTCGGAAGGCGCAGTGAATCTGCTTCAGTCGCTCATTGACAACCTCGACAGCGTTTTGCCTCAGGGGATTTTGGATGACGCGATGGCGGTTCCGACGGTCCCGCCTGCGAGCAAACAGGTGGTGGCCAATCTTCCGGTGATCATGATCCCGGAGGAAGTGTTTAAGGAGCTCGGAGAGGACGCAGATTGCTGCATTTGTAAGGAAAACTTGGTTGTCAATGACAAAATGCAGGAGTCGCTCAAGCACACTTTTCATCCTCCTTTAAAAAAGCTATGGATGAGCGCAATTTTTGTCCGATACGCCGGCATGAGTCACAGACGCATGATCATGCATACGAGAGCTGGAAGGAGAGGGAGAAGGAGGCCGAAGAAGATAGAAAAGGGGCTTCGAATGCGATTCGAGGTGGTGAATACATATATGTTTAATTCTTATTCATTCCGTCGCATTAAGCATGGCCGTGATTGTGTGCTCTGTTTCTCTGGTAAGGTATGTTTTCTACTTTCGATTTTAAACTCAGTACAAATATTGGAATTGTACGTTTTTATATATCTATTTTTATCGTCGTCTTATTATATGTATATATATATTTTTGACTTTAAGTTACTACATAATAATTTGTATTTTCAACTTTATATTTTATACGAGTATTATACTATACTACCAATTAAGAAAGAAAGAAAGAAGTCTCTTTTATACAACCGCTCTAACTTAATTTCTTCCTTATATATATATATATATATATATATGTTTTCTCCATATTTTCGAGTATTTTACATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010498 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1905957 GO:1905958

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

276

Amino Acids

32.21

Weight (kDa)

9.21

Isoelectric Point (pI)

62.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	750
AccII	CGCG	1 cut(s)	128
AciI	CCGC	5 cut(s)	5, 8, 134, 149, 748
AclWI	GGATC	1 cut(s)	187
AcoI	YGGCCR	2 cut(s)	171, 502
AcuI	CTGAAG	1 cut(s)	56
AfaI	GTAC	2 cut(s)	567, 584
AgsI	TTSAA	1 cut(s)	674
AluBI	AGCT	3 cut(s)	217, 319, 389
AluI	AGCT	3 cut(s)	217, 319, 389
Alw21I	GWGCWC	2 cut(s)	219, 519
Alw26I	GTCTC	1 cut(s)	738
AlwI	GGATC	1 cut(s)	187
AoxI	GGCC	3 cut(s)	171, 410, 502
ApeKI	GCWGC	1 cut(s)	237
AspLEI	GCGC	2 cut(s)	59, 332
AspS9I	GGNCC	2 cut(s)	29, 145
AsuC2I	CCSGG	2 cut(s)	33, 197
AsuHPI	GGTGA	2 cut(s)	196, 466
AsuII	TTCGAA	1 cut(s)	436
AvaII	GGWCC	2 cut(s)	29, 145
AxyI	CCTNAGG	1 cut(s)	108
BalI	TGGCCA	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	9
Bbv12I	GWGCWC	2 cut(s)	219, 519
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	1 cut(s)	124
BceAI	ACGGC	1 cut(s)	489
BclI	TGATCA	2 cut(s)	186, 372
BcnI	CCSGG	2 cut(s)	33, 197
BcoDI	GTCTC	1 cut(s)	738
BisI	GCNGC	2 cut(s)	6, 238
BlsI	GCNGC	2 cut(s)	7, 239
Bme1390I	CCNGG	2 cut(s)	33, 197
Bme18I	GGWCC	2 cut(s)	29, 145
BmgT120I	GGNCC	2 cut(s)	29, 145
BmiI	GGNNCC	4 cut(s)	30, 31, 138, 147
BmrFI	CCNGG	2 cut(s)	33, 197
BpiI	GAAGAC	1 cut(s)	9
Bpu14I	TTCGAA	1 cut(s)	436
BpuEI	CTTGAG	1 cut(s)	272
BpuMI	CCSGG	2 cut(s)	33, 197
BsaBI	GATNNNNATC	1 cut(s)	191
BsaWI	WCCGGW	1 cut(s)	181
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bse118I	RCCGGY	1 cut(s)	350
Bse21I	CCTNAGG	1 cut(s)	108
Bse8I	GATNNNNATC	1 cut(s)	191
BseGI	GGATG	3 cut(s)	127, 301, 330
BseJI	GATNNNNATC	1 cut(s)	191
BseMII	CTCAG	3 cut(s)	12, 122, 576
BseXI	GCAGC	1 cut(s)	224
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	3 cut(s)	173, 412, 504
BsiHKAI	GWGCWC	2 cut(s)	219, 519
BsiSI	CCGG	4 cut(s)	33, 182, 197, 351
BslFI	GGGAC	2 cut(s)	15, 131
BsmAI	GTCTC	1 cut(s)	738
BsmFI	GGGAC	2 cut(s)	15, 131
BsmI	GAATGC	1 cut(s)	444
BsnI	GGCC	3 cut(s)	173, 412, 504
Bsp119I	TTCGAA	1 cut(s)	436
Bsp1286I	GDGCHC	2 cut(s)	219, 519
Bsp143I	GATC	3 cut(s)	186, 192, 372
BspACI	CCGC	5 cut(s)	5, 8, 134, 149, 748
BspANI	GGCC	3 cut(s)	173, 412, 504
BspCNI	CTCAG	3 cut(s)	13, 121, 575
BspFNI	CGCG	1 cut(s)	128
BspHI	TCATGA	1 cut(s)	189
BspLI	GGNNCC	4 cut(s)	30, 31, 138, 147
BspPI	GGATC	1 cut(s)	187
BspT104I	TTCGAA	1 cut(s)	436
BsrBI	CCGCTC	1 cut(s)	750
BsrFI	RCCGGY	1 cut(s)	350
BssAI	RCCGGY	1 cut(s)	350
BssMI	GATC	3 cut(s)	186, 192, 372
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	36
BstBI	TTCGAA	1 cut(s)	436
BstC8I	GCNNGC	3 cut(s)	153, 157, 352
BstDEI	CTNAG	3 cut(s)	21, 108, 562
BstF5I	GGATG	3 cut(s)	127, 301, 330
BstFNI	CGCG	1 cut(s)	128
BstHHI	GCGC	2 cut(s)	59, 332
BstKTI	GATC	3 cut(s)	189, 195, 375
BstMAI	GTCTC	1 cut(s)	738
BstMBI	GATC	3 cut(s)	186, 192, 372
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 283, 439
BstSCI	CCNGG	2 cut(s)	31, 195
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	224
BstV2I	GAAGAC	1 cut(s)	9
Bsu36I	CCTNAGG	1 cut(s)	108
BsuRI	GGCC	3 cut(s)	173, 412, 504
BtgZI	GCGATG	1 cut(s)	143
BtsCI	GGATG	3 cut(s)	127, 301, 330
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	3 cut(s)	153, 157, 352
CciI	TCATGA	1 cut(s)	189
CfoI	GCGC	2 cut(s)	59, 332
Cfr10I	RCCGGY	1 cut(s)	350
Cfr13I	GGNCC	2 cut(s)	29, 145
CseI	GACGC	3 cut(s)	134, 236, 375
Csp6I	GTAC	2 cut(s)	566, 583
CviAII	CATG	5 cut(s)	190, 355, 370, 376, 500
CviJI	RGCY	7 cut(s)	173, 217, 319, 389, 412, 433, 504
CviKI_1	RGCY	7 cut(s)	173, 217, 319, 389, 412, 433, 504
CviQI	GTAC	2 cut(s)	566, 583
DdeI	CTNAG	3 cut(s)	21, 108, 562
DpnI	GATC	3 cut(s)	188, 194, 374
DpnII	GATC	3 cut(s)	186, 192, 372
DraI	TTTAAA	2 cut(s)	312, 558
EaeI	YGGCCR	2 cut(s)	171, 502
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	219
Eco47I	GGWCC	2 cut(s)	29, 145
Eco53kI	GAGCTC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	56
Eco81I	CCTNAGG	1 cut(s)	108
EcoICRI	GAGCTC	1 cut(s)	217
EcoO109I	RGGNCCY	1 cut(s)	29
EcoT22I	ATGCAT	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	219
FaeI	CATG	5 cut(s)	193, 358, 373, 379, 503
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FaqI	GGGAC	2 cut(s)	15, 131
FatI	CATG	5 cut(s)	189, 354, 369, 375, 499
FauI	CCCGC	1 cut(s)	156
FbaI	TGATCA	2 cut(s)	186, 372
Fnu4HI	GCNGC	2 cut(s)	6, 238
FokI	GGATG	3 cut(s)	134, 288, 337
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	2 cut(s)	6, 238
GlaI	GCGC	2 cut(s)	58, 331
GluI	GCNGC	2 cut(s)	6, 238
HaeIII	GGCC	3 cut(s)	173, 412, 504
HapII	CCGG	4 cut(s)	33, 182, 197, 351
HgaI	GACGC	3 cut(s)	134, 236, 375
HhaI	GCGC	2 cut(s)	59, 332
Hin1II	CATG	5 cut(s)	193, 358, 373, 379, 503
Hin6I	GCGC	2 cut(s)	57, 330
HinP1I	GCGC	2 cut(s)	57, 330
HinfI	GANTC	5 cut(s)	36, 64, 281, 358, 444
HpaII	CCGG	4 cut(s)	33, 182, 197, 351
HphI	GGTGA	2 cut(s)	196, 466
Hpy188I	TCNGA	5 cut(s)	22, 52, 141, 221, 344
Hpy188III	TCNNGA	1 cut(s)	190
Hpy99I	CGWCG	3 cut(s)	145, 492, 613
HpyAV	CCTTC	3 cut(s)	47, 387, 399
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	3 cut(s)	240, 277, 379
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 283, 439
HpyF3I	CTNAG	3 cut(s)	21, 108, 562
HpySE526I	ACGT	1 cut(s)	585
Hsp92II	CATG	5 cut(s)	193, 358, 373, 379, 503
HspAI	GCGC	2 cut(s)	57, 330
KflI	GGGWCCC	1 cut(s)	29
KroI	GCCGGC	1 cut(s)	350
KroNI	GCCGGC	1 cut(s)	352
Ksp22I	TGATCA	2 cut(s)	186, 372
Kzo9I	GATC	3 cut(s)	186, 192, 372
LmnI	GCTCC	1 cut(s)	214
Lsp1109I	GCAGC	1 cut(s)	224
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	2 cut(s)	359, 648
MalI	GATC	3 cut(s)	188, 194, 374
MbiI	CCGCTC	1 cut(s)	750
MboI	GATC	3 cut(s)	186, 192, 372
MboII	GAAGA	6 cut(s)	9, 53, 170, 427, 430, 756
MhlI	GDGCHC	2 cut(s)	219, 519
MlsI	TGGCCA	1 cut(s)	173
MluCI	AATT	6 cut(s)	333, 472, 578, 661, 711, 759
MluNI	TGGCCA	1 cut(s)	173
MlyI	GAGTC	2 cut(s)	290, 367
MmeI	TCCRAC	1 cut(s)	164
MnlI	CCTC	8 cut(s)	101, 117, 193, 217, 315, 392, 402, 442
Mox20I	TGGCCA	1 cut(s)	173
Mph1103I	ATGCAT	1 cut(s)	381
MroNI	GCCGGC	1 cut(s)	350
MscI	TGGCCA	1 cut(s)	173
MseI	TTAA	8 cut(s)	210, 311, 471, 495, 557, 645, 714, 758
MslI	CAYNNNNRTG	2 cut(s)	374, 504
Msp20I	TGGCCA	1 cut(s)	173
MspI	CCGG	4 cut(s)	33, 182, 197, 351
MspR9I	CCNGG	2 cut(s)	33, 197
Mva1269I	GAATGC	1 cut(s)	444
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	3 cut(s)	76, 283, 439
NaeI	GCCGGC	1 cut(s)	352
NciI	CCSGG	2 cut(s)	33, 197
NdeII	GATC	3 cut(s)	186, 192, 372
NgoMIV	GCCGGC	1 cut(s)	350
NlaIII	CATG	5 cut(s)	193, 358, 373, 379, 503
NlaIV	GGNNCC	4 cut(s)	30, 31, 138, 147
NmuCI	GTSAC	1 cut(s)	359
NsiI	ATGCAT	1 cut(s)	381
NspV	TTCGAA	1 cut(s)	436
PagI	TCATGA	1 cut(s)	189
PctI	GAATGC	1 cut(s)	444
PdiI	GCCGGC	1 cut(s)	352
PfeI	GAWTC	3 cut(s)	36, 64, 444
PfoI	TCCNGGA	2 cut(s)	31, 195
PkrI	GCNGC	2 cut(s)	7, 239
PleI	GAGTC	2 cut(s)	289, 366
PpsI	GAGTC	2 cut(s)	289, 366
PpuMI	RGGWCCY	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	29
PspN4I	GGNNCC	4 cut(s)	30, 31, 138, 147
PspPI	GGNCC	2 cut(s)	29, 145
PspPPI	RGGWCCY	1 cut(s)	29
RsaI	GTAC	2 cut(s)	567, 584
RsaNI	GTAC	2 cut(s)	566, 583
RseI	CAYNNNNRTG	2 cut(s)	374, 504
SacI	GAGCTC	1 cut(s)	219
SaqAI	TTAA	8 cut(s)	210, 311, 471, 495, 557, 645, 714, 758
SatI	GCNGC	2 cut(s)	6, 238
Sau3AI	GATC	3 cut(s)	186, 192, 372
Sau96I	GGNCC	2 cut(s)	29, 145
SchI	GAGTC	2 cut(s)	290, 367
ScrFI	CCNGG	2 cut(s)	33, 197
SduI	GDGCHC	2 cut(s)	219, 519
SetI	ASST	8 cut(s)	93, 168, 219, 321, 391, 453, 537, 588
SfuI	TTCGAA	1 cut(s)	436
SinI	GGWCC	2 cut(s)	29, 145
SmiMI	CAYNNNNRTG	2 cut(s)	374, 504
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	6 cut(s)	333, 472, 578, 661, 711, 759
SsiI	CCGC	5 cut(s)	5, 8, 134, 149, 748
SspI	AATATT	1 cut(s)	573
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	31, 195
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	6 cut(s)	39, 93, 436, 447, 551, 811
TasI	AATT	6 cut(s)	333, 472, 578, 661, 711, 759
TatI	WGTACW	1 cut(s)	565
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	36, 64, 444
Tru1I	TTAA	8 cut(s)	210, 311, 471, 495, 557, 645, 714, 758
Tru9I	TTAA	8 cut(s)	210, 311, 471, 495, 557, 645, 714, 758
TscAI	CASTG	1 cut(s)	66
TseFI	GTSAC	1 cut(s)	359
TseI	GCWGC	1 cut(s)	237
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	2 cut(s)	290, 471
TspGWI	ACGGA	1 cut(s)	476
TspRI	CASTG	1 cut(s)	66
VpaK11BI	GGWCC	2 cut(s)	29, 145
Zsp2I	ATGCAT	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.