Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2943635 .. 2945192

Gene Structure 1558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCCTTGAAGGGCAAATCCCCCCCAACTAATCGTTGTTTAAGTTGGTTCTGGTTGGTGTTTGCATTAACTCTTTTCCACCCACCGCCTTTCATGCTCATATATATATATATATCAACACCCCTTTCATCTCTCTCACTATCCATTCCAATTCAGTCCATGCCAATCCCATCCACCATGGCCAGCGAGCAAGATCTTCTGTCCACGGAGATTGTCAACCGTGGGGTTGAGTCATCCGGCCCCAATGCCGGCTCCCCCACATTCTCAGTGAGGGTGCAAAGGCGGCTGCCGGACTTTTTACAGTCCGTGAACCTTAAGTATGTGAAGTTGGGGTACCACCACCTCATCAACCATGCCATATATTTAGCAACAATCCCTGTGCTTGTGCTGGTGTTCAGTGCTGAGGTGGGTAGTTTGAGCAGGGAGGAGCTGTGGAAGAAGCTTTGGGATGATGCACGTTATGACCTAGCTACTGTGCTAGGGTTCTTTGGTGTATTTGTTTTCACTTTGTCAGTTCACATCATGTCACGCCCTCGATCCATCTACCTCGTTGATTTCGCTTGTTTTCGGCCTAATGACGATCTTAAGGTCTCTAAGGAGCAATTCATAGAGGTAGCAAGAAAATCAGGCAAATTCGACGAGGCGAGCCTAGAATTCCAGAAGAGAATTCTAAACTCATCAGGCTTAGGAGACGAGACCTACATCCCAAAATCGATCGATCATGTCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

244

Amino Acids

27.46

Weight (kDa)

7.79

Isoelectric Point (pI)

49.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAE1_CUT1_RppA	PF08392	174 - 240	9.2e-20	FAE1/Type III polyketide synthase-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	333
AccB1I	GGYRCC	1 cut(s)	333
AccI	GTMKAC	1 cut(s)	726
AciI	CCGC	2 cut(s)	86, 283
AclWI	GGATC	1 cut(s)	531
AcoI	YGGCCR	1 cut(s)	180
AcsI	RAATTY	3 cut(s)	632, 653, 666
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	1 cut(s)	248
AflII	CTTAAG	2 cut(s)	314, 584
AgsI	TTSAA	1 cut(s)	10
AluBI	AGCT	3 cut(s)	430, 442, 470
AluI	AGCT	3 cut(s)	430, 442, 470
Alw26I	GTCTC	3 cut(s)	595, 684, 689
AlwI	GGATC	1 cut(s)	531
AoxI	GGCC	4 cut(s)	3, 180, 238, 569
ApeKI	GCWGC	1 cut(s)	286
ApoI	RAATTY	3 cut(s)	632, 653, 666
Asp718I	GGTACC	1 cut(s)	333
AspS9I	GGNCC	1 cut(s)	239
BalI	TGGCCA	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	333
BarI	GAAGNNNNNNTAC	2 cut(s)	317, 349
BbvCI	CCTCAGC	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	273
BccI	CCATC	2 cut(s)	178, 548
BcoDI	GTCTC	3 cut(s)	595, 684, 689
BfaI	CTAG	3 cut(s)	467, 479, 650
BfrI	CTTAAG	2 cut(s)	314, 584
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	2 cut(s)	284, 287
BlsI	GCNGC	2 cut(s)	285, 288
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	3 cut(s)	241, 253, 335
BmsI	GCATC	1 cut(s)	442
Bpu10I	CCTNAGC	2 cut(s)	402, 685
Bsa29I	ATCGAT	2 cut(s)	713, 717
BsaI	GGTCTC	2 cut(s)	595, 689
BsaJI	CCNNGG	3 cut(s)	177, 204, 220
BsaXI	ACNNNNNCTCC	2 cut(s)	416, 446
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse118I	RCCGGY	1 cut(s)	248
BseCI	ATCGAT	2 cut(s)	713, 717
BseDI	CCNNGG	3 cut(s)	177, 204, 220
BseGI	GGATG	4 cut(s)	170, 233, 454, 702
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMII	CTCAG	2 cut(s)	279, 393
BseRI	GAGGAG	1 cut(s)	440
BseXI	GCAGC	1 cut(s)	273
Bsh1285I	CGRYCG	1 cut(s)	717
BshFI	GGCC	4 cut(s)	5, 182, 240, 571
BshNI	GGYRCC	1 cut(s)	333
BshVI	ATCGAT	2 cut(s)	713, 717
BsiEI	CGRYCG	1 cut(s)	717
BsiSI	CCGG	3 cut(s)	237, 249, 290
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	3 cut(s)	595, 684, 689
BsmBI	CGTCTC	1 cut(s)	684
BsnI	GGCC	4 cut(s)	5, 182, 240, 571
Bso31I	GGTCTC	2 cut(s)	595, 689
Bsp143I	GATC	5 cut(s)	193, 536, 580, 714, 718
Bsp19I	CCATGG	1 cut(s)	177
BspACI	CCGC	2 cut(s)	86, 283
BspANI	GGCC	4 cut(s)	5, 182, 240, 571
BspCNI	CTCAG	2 cut(s)	278, 394
BspDI	ATCGAT	2 cut(s)	713, 717
BspLI	GGNNCC	3 cut(s)	241, 253, 335
BspPI	GGATC	1 cut(s)	531
BspT107I	GGYRCC	1 cut(s)	333
BspTI	CTTAAG	2 cut(s)	314, 584
BspTNI	GGTCTC	2 cut(s)	595, 689
BsrFI	RCCGGY	1 cut(s)	248
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	3 cut(s)	177, 204, 220
BssMI	GATC	5 cut(s)	193, 536, 580, 714, 718
BssT1I	CCWWGG	1 cut(s)	177
Bst4CI	ACNGT	3 cut(s)	221, 303, 475
Bst6I	CTCTTC	1 cut(s)	656
BstAFI	CTTAAG	2 cut(s)	314, 584
BstC8I	GCNNGC	4 cut(s)	184, 188, 250, 646
BstDEI	CTNAG	4 cut(s)	265, 402, 594, 685
BstDSI	CCRYGG	3 cut(s)	177, 204, 220
BstF5I	GGATG	4 cut(s)	170, 233, 454, 702
BstKTI	GATC	5 cut(s)	196, 539, 583, 717, 721
BstMAI	GTCTC	3 cut(s)	595, 684, 689
BstMBI	GATC	5 cut(s)	193, 536, 580, 714, 718
BstMCI	CGRYCG	1 cut(s)	717
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 283
BstV1I	GCAGC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
Bsu15I	ATCGAT	2 cut(s)	713, 717
BsuRI	GGCC	4 cut(s)	5, 182, 240, 571
BsuTUI	ATCGAT	2 cut(s)	713, 717
BtgI	CCRYGG	3 cut(s)	177, 204, 220
BtsCI	GGATG	4 cut(s)	170, 233, 454, 702
BtsIMutI	CAGTG	2 cut(s)	273, 403
Cac8I	GCNNGC	4 cut(s)	184, 188, 250, 646
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	239
ClaI	ATCGAT	2 cut(s)	713, 717
Csp6I	GTAC	1 cut(s)	334
CspCI	CAANNNNNGTGG	2 cut(s)	193, 228
CviAII	CATG	6 cut(s)	94, 160, 178, 353, 523, 722
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	4 cut(s)	265, 402, 594, 685
DpnI	GATC	5 cut(s)	195, 538, 582, 716, 720
DpnII	GATC	5 cut(s)	193, 536, 580, 714, 718
EaeI	YGGCCR	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	656
EarI	CTCTTC	1 cut(s)	656
Eco130I	CCWWGG	1 cut(s)	177
Eco31I	GGTCTC	2 cut(s)	595, 689
EcoRI	GAATTC	2 cut(s)	653, 666
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
Esp3I	CGTCTC	1 cut(s)	684
FaeI	CATG	6 cut(s)	97, 163, 181, 356, 526, 725
FatI	CATG	6 cut(s)	93, 159, 177, 352, 522, 721
FblI	GTMKAC	1 cut(s)	726
Fnu4HI	GCNGC	2 cut(s)	284, 287
FokI	GGATG	4 cut(s)	157, 220, 461, 689
Fsp4HI	GCNGC	2 cut(s)	284, 287
FspBI	CTAG	3 cut(s)	467, 479, 650
GluI	GCNGC	2 cut(s)	284, 287
HaeIII	GGCC	4 cut(s)	5, 182, 240, 571
HapII	CCGG	3 cut(s)	237, 249, 290
Hin1II	CATG	6 cut(s)	97, 163, 181, 356, 526, 725
HincII	GTYRAC	2 cut(s)	217, 727
HindII	GTYRAC	2 cut(s)	217, 727
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	1 cut(s)	230
HpaII	CCGG	3 cut(s)	237, 249, 290
Hpy166II	GTNNAC	5 cut(s)	204, 217, 310, 517, 727
Hpy188III	TCNNGA	1 cut(s)	658
Hpy8I	GTNNAC	5 cut(s)	204, 217, 310, 517, 727
Hpy99I	CGWCG	1 cut(s)	641
HpyAV	CCTTC	1 cut(s)	4
HpyCH4III	ACNGT	3 cut(s)	221, 303, 475
HpyCH4IV	ACGT	1 cut(s)	457
HpyCH4V	TGCA	3 cut(s)	65, 277, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 283
HpyF3I	CTNAG	4 cut(s)	265, 402, 594, 685
HpySE526I	ACGT	1 cut(s)	457
Hsp92II	CATG	6 cut(s)	97, 163, 181, 356, 526, 725
KpnI	GGTACC	1 cut(s)	337
KroI	GCCGGC	1 cut(s)	248
KroNI	GCCGGC	1 cut(s)	250
Kzo9I	GATC	5 cut(s)	193, 536, 580, 714, 718
LmnI	GCTCC	3 cut(s)	257, 427, 598
Lsp1109I	GCAGC	1 cut(s)	273
LweI	GCATC	1 cut(s)	442
MaeI	CTAG	3 cut(s)	467, 479, 650
MaeII	ACGT	1 cut(s)	457
MaeIII	GTNAC	1 cut(s)	525
MalI	GATC	5 cut(s)	195, 538, 582, 716, 720
MboI	GATC	5 cut(s)	193, 536, 580, 714, 718
MboII	GAAGA	3 cut(s)	188, 448, 673
MflI	RGATCY	1 cut(s)	193
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	5 cut(s)	150, 602, 632, 653, 666
MluNI	TGGCCA	1 cut(s)	182
MlyI	GAGTC	1 cut(s)	239
MnlI	CCTC	8 cut(s)	264, 353, 397, 418, 543, 557, 604, 634
Mox20I	TGGCCA	1 cut(s)	182
MroNI	GCCGGC	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	182
MseI	TTAA	4 cut(s)	41, 68, 315, 585
Msp20I	TGGCCA	1 cut(s)	182
MspCI	CTTAAG	2 cut(s)	314, 584
MspI	CCGG	3 cut(s)	237, 249, 290
MwoI	GCNNNNNNNGC	2 cut(s)	94, 283
NaeI	GCCGGC	1 cut(s)	250
NcoI	CCATGG	1 cut(s)	177
NdeII	GATC	5 cut(s)	193, 536, 580, 714, 718
NgoMIV	GCCGGC	1 cut(s)	248
NlaIII	CATG	6 cut(s)	97, 163, 181, 356, 526, 725
NlaIV	GGNNCC	3 cut(s)	241, 253, 335
NmuCI	GTSAC	1 cut(s)	525
PcsI	WCGNNNNNNNCGW	1 cut(s)	723
PdiI	GCCGGC	1 cut(s)	250
PkrI	GCNGC	2 cut(s)	285, 288
Ple19I	CGATCG	1 cut(s)	717
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PspN4I	GGNNCC	3 cut(s)	241, 253, 335
PspPI	GGNCC	1 cut(s)	239
PsuI	RGATCY	1 cut(s)	193
PvuI	CGATCG	1 cut(s)	717
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
SalI	GTCGAC	1 cut(s)	725
SaqAI	TTAA	4 cut(s)	41, 68, 315, 585
SatI	GCNGC	2 cut(s)	284, 287
Sau3AI	GATC	5 cut(s)	193, 536, 580, 714, 718
Sau96I	GGNCC	1 cut(s)	239
SchI	GAGTC	1 cut(s)	239
SfaNI	GCATC	1 cut(s)	442
SmlI	CTYRAG	2 cut(s)	314, 584
SmoI	CTYRAG	2 cut(s)	314, 584
Sse9I	AATT	5 cut(s)	150, 602, 632, 653, 666
SsiI	CCGC	2 cut(s)	86, 283
SspMI	CTAG	3 cut(s)	467, 479, 650
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	3 cut(s)	221, 303, 475
TaiI	ACGT	1 cut(s)	460
TaqI	TCGA	5 cut(s)	535, 636, 713, 717, 726
TasI	AATT	5 cut(s)	150, 602, 632, 653, 666
TauI	GCSGC	1 cut(s)	286
Tru1I	TTAA	4 cut(s)	41, 68, 315, 585
Tru9I	TTAA	4 cut(s)	41, 68, 315, 585
TscAI	CASTG	2 cut(s)	273, 403
TseFI	GTSAC	1 cut(s)	525
TseI	GCWGC	1 cut(s)	286
Tsp45I	GTSAC	1 cut(s)	525
TspDTI	ATGAA	3 cut(s)	82, 117, 595
TspGWI	ACGGA	2 cut(s)	221, 295
TspRI	CASTG	2 cut(s)	273, 403
Vha464I	CTTAAG	2 cut(s)	314, 584
XapI	RAATTY	3 cut(s)	632, 653, 666
XmiI	GTMKAC	1 cut(s)	726
XspI	CTAG	3 cut(s)	467, 479, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.