pycom08g03980

Histidine kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Forward (+)
3007753 .. 3009435
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1272 bp
ATGGTTTGGGATATGGAGACCGACAACATCGACGAAATGGACATGGAAGGTCTCCCTTCCATGTGGCCTGACGACATCGGAGCTGATGCCGGAAAGCAATTCAACATAGACAAGCCGGGGCAAGATCAGGACATGTTGGAGGAGGTGACATTCATAGAGGAACCAACAATCGTTGATTTCCAGCGCCTTGTCGAGCTGACAAACTACACCGATAAGGGCTCTTCGCAACTTGCATTCCTCGTAAAACACTGGGAGTATAAGCAGGCAAATGCCGCGCGCCTTCTCAGAGAAGAACTCGACATCTTAAGCAAGCAAAGGCAGGAGGTTGAGCTCAAGAAGTTGGAGATACTGGAAGAACATCGCTTTGAGGCAGAGAGTTATGGAGGCGACAAGCGCCCCATTTCGATTTTGGATGAAGTTTATGACATATGGCCGGAAATTGCCCCGAAGAAACATGATGTTGTTGTGCTGACCAAGAGGGTTGAGGTAGAAGCCGAGTATGATACTGTTGCGTACTGGAAGCAGAGGGCAATGCAATTGGAGAAACTGTTGGAGGCGAGTGCCGAGAGAGAGCAGATTCTTGTGGAAAAATTGCAGGAAAGCATTCGGAGTCTCGAAAGGCAGTCATCGCCAGTTGAAGAACTTTCTCAGATTTTGAAAAGAGCAGATAATTTCTTGCATTTTGTTCTTCAGAATGCACCTGTTGTTATTGGCCACCAGGATAAAGAATTGCGGTATCGATTTATCTATAACCACTTCCCAAGTTTGCAAGAGGAGGACATTATAGGAAGAACAGATGTAGAAATTTTTTCTGGAGCCGGCGTTAAAGAATCTCAAGATTTCAAGAAAGAGGTCCTAGAGAAAGGCATACCTTCAAAAAGGGAGATGACATTTGAAACGCCCTTGTTCGGGTCGAAAACGTTTTTGATATATGTGGAACCTGTCTTCAGCAAGGCAGGGGAGACAATTGGTATAAACTATATGGGGATGGATGTAACTGATCAGGTGAGGAAAAGAGAGAAGATGGCAAAGCTTCGTGAGGAAATCGCGGTCCAGAAAGCCAAAGAAACAGAACTGAACAAAACAATTCACATCACAGAGGAGACAATGCGAGCGAAACAGATGCTTGCAACAATGTCTCATGAGATAAGATCGATCCTCTTTCCGGGGTTGTTAGCATGGCTGAGATTCTCACCACCACGAAACTGGATCACGAGCAACGCCAACTTTTGGACGTCATGTTATCTTCGGGAGATTTGGTCCTTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

424

Amino Acids

49.42

Weight (kDa)

4.97

Isoelectric Point (pI)

55.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1238
AccB7I CCANNNNNTGG 1 cut(s) 1230
AccII CGCG 3 cut(s) 275, 277, 1049
AciI CCGC 3 cut(s) 273, 733, 1049
AclI AACGTT 1 cut(s) 920
AclWI GGATC 2 cut(s) 1150, 1217
AcoI YGGCCR 2 cut(s) 431, 712
AcsI RAATTY 1 cut(s) 804
AcuI CTGAAG 2 cut(s) 674, 931
AcyI GRCGYC 1 cut(s) 1235
AfaI GTAC 1 cut(s) 515
AfiI CCNNNNNNNGG 4 cut(s) 908, 909, 1165, 1230
AflII CTTAAG 1 cut(s) 304
AflIII ACRYGT 1 cut(s) 132
AgsI TTSAA 7 cut(s) 103, 638, 658, 844, 876, 896, 1267
AjnI CCWGG 1 cut(s) 717
AluBI AGCT 4 cut(s) 83, 196, 331, 1033
AluI AGCT 4 cut(s) 83, 196, 331, 1033
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 6 cut(s) 11, 56, 617, 956, 1097, 1143
AlwI GGATC 2 cut(s) 1150, 1217
AoxI GGCC 3 cut(s) 65, 431, 712
ApoI RAATTY 1 cut(s) 804
Asp700I GAANNNNTTC 1 cut(s) 603
AspLEI GCGC 4 cut(s) 186, 277, 279, 396
AspS9I GGNCC 3 cut(s) 853, 1051, 1260
AsuC2I CCSGG 2 cut(s) 117, 1167
AsuHPI GGTGA 3 cut(s) 157, 1018, 1185
AvaII GGWCC 3 cut(s) 853, 1051, 1260
BalI TGGCCA 1 cut(s) 714
BanII GRGCYC 2 cut(s) 221, 333
BauI CACGAG 1 cut(s) 1213
BbsI GAAGAC 1 cut(s) 937
Bbv12I GWGCWC 1 cut(s) 333
BccI CCATC 2 cut(s) 982, 1018
BcgI CGANNNNNNTGC 2 cut(s) 1105, 1139
BciT130I CCWGG 1 cut(s) 719
BclI TGATCA 1 cut(s) 1000
BcnI CCSGG 2 cut(s) 117, 1167
BcoDI GTCTC 6 cut(s) 11, 56, 617, 956, 1097, 1143
BfaI CTAG 1 cut(s) 857
BfoI RGCGCY 2 cut(s) 187, 397
BfrI CTTAAG 1 cut(s) 304
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
Bme1390I CCNGG 3 cut(s) 117, 719, 1167
Bme18I GGWCC 3 cut(s) 853, 1051, 1260
BmgT120I GGNCC 3 cut(s) 853, 1051, 1260
BmiI GGNNCC 3 cut(s) 162, 817, 939
BmrFI CCNGG 3 cut(s) 117, 719, 1167
BmrI ACTGGG 1 cut(s) 259
BmsI GCATC 2 cut(s) 76, 1113
BmuI ACTGGG 1 cut(s) 259
BpiI GAAGAC 1 cut(s) 937
BplI GAGNNNNNCTC 2 cut(s) 279, 311
BpmI CTGGAG 1 cut(s) 834
BpuEI CTTGAG 2 cut(s) 317, 819
BpuMI CCSGG 2 cut(s) 117, 1167
Bsa29I ATCGAT 2 cut(s) 739, 1154
BsaHI GRCGYC 1 cut(s) 1235
BsaI GGTCTC 2 cut(s) 11, 56
BsaJI CCNNGG 2 cut(s) 116, 1166
BsaXI ACNNNNNCTCC 5 cut(s) 533, 563, 807, 837, 1244
Bsc4I CCNNNNNNNGG 4 cut(s) 908, 909, 1165, 1230
Bse118I RCCGGY 1 cut(s) 818
Bse1I ACTGG 5 cut(s) 254, 354, 521, 632, 1211
Bse3DI GCAATG 1 cut(s) 537
BseBI CCWGG 1 cut(s) 719
BseCI ATCGAT 2 cut(s) 739, 1154
BseDI CCNNGG 2 cut(s) 116, 1166
BseGI GGATG 3 cut(s) 418, 993, 997
BseLI CCNNNNNNNGG 4 cut(s) 908, 909, 1165, 1230
BseMI GCAATG 1 cut(s) 537
BseMII CTCAG 3 cut(s) 298, 662, 1175
BseNI ACTGG 5 cut(s) 254, 354, 521, 632, 1211
BsePI GCGCGC 1 cut(s) 275
BseRI GAGGAG 3 cut(s) 155, 788, 1115
Bsh1236I CGCG 3 cut(s) 275, 277, 1049
BshFI GGCC 3 cut(s) 67, 433, 714
BshVI ATCGAT 2 cut(s) 739, 1154
BsiHKAI GWGCWC 1 cut(s) 333
BsiSI CCGG 5 cut(s) 90, 116, 434, 819, 1166
BslI CCNNNNNNNGG 4 cut(s) 908, 909, 1165, 1230
BsmAI GTCTC 6 cut(s) 11, 56, 617, 956, 1097, 1143
BsmI GAATGC 3 cut(s) 233, 603, 700
BsnI GGCC 3 cut(s) 67, 433, 714
Bso31I GGTCTC 2 cut(s) 11, 56
Bsp1286I GDGCHC 2 cut(s) 221, 333
Bsp143I GATC 5 cut(s) 124, 1000, 1151, 1155, 1209
BspACI CCGC 3 cut(s) 273, 733, 1049
BspANI GGCC 3 cut(s) 67, 433, 714
BspCNI CTCAG 3 cut(s) 297, 661, 1176
BspDI ATCGAT 2 cut(s) 739, 1154
BspFNI CGCG 3 cut(s) 275, 277, 1049
BspHI TCATGA 1 cut(s) 1141
BspLI GGNNCC 3 cut(s) 162, 817, 939
BspPI GGATC 2 cut(s) 1150, 1217
BspQI GCTCTTC 1 cut(s) 226
BspTI CTTAAG 1 cut(s) 304
BspTNI GGTCTC 2 cut(s) 11, 56
BsrDI GCAATG 1 cut(s) 537
BsrFI RCCGGY 1 cut(s) 818
BsrI ACTGG 5 cut(s) 254, 354, 521, 632, 1211
BssAI RCCGGY 1 cut(s) 818
BssECI CCNNGG 2 cut(s) 116, 1166
BssHII GCGCGC 1 cut(s) 275
BssMI GATC 5 cut(s) 124, 1000, 1151, 1155, 1209
BssNI GRCGYC 1 cut(s) 1235
BssSI CACGAG 1 cut(s) 1213
Bst2BI CACGAG 1 cut(s) 1213
Bst2UI CCWGG 1 cut(s) 719
Bst4CI ACNGT 2 cut(s) 508, 549
Bst6I CTCTTC 1 cut(s) 226
BstACI GRCGYC 1 cut(s) 1235
BstAFI CTTAAG 1 cut(s) 304
BstC8I GCNNGC 6 cut(s) 264, 277, 311, 820, 1113, 1128
BstDEI CTNAG 3 cut(s) 284, 648, 1184
BstF5I GGATG 3 cut(s) 418, 993, 997
BstFNI CGCG 3 cut(s) 275, 277, 1049
BstH2I RGCGCY 2 cut(s) 187, 397
BstHHI GCGC 4 cut(s) 186, 277, 279, 396
BstKTI GATC 5 cut(s) 127, 1003, 1154, 1158, 1212
BstMAI GTCTC 6 cut(s) 11, 56, 617, 956, 1097, 1143
BstMBI GATC 5 cut(s) 124, 1000, 1151, 1155, 1209
BstMWI GCNNNNNNNGC 3 cut(s) 272, 393, 628
BstNI CCWGG 1 cut(s) 719
BstNSI RCATGY 1 cut(s) 136
BstSCI CCNGG 3 cut(s) 115, 717, 1165
BstUI CGCG 3 cut(s) 275, 277, 1049
BstV2I GAAGAC 1 cut(s) 937
BstXI CCANNNNNNTGG 1 cut(s) 1206
Bsu15I ATCGAT 2 cut(s) 739, 1154
BsuRI GGCC 3 cut(s) 67, 433, 714
BsuTUI ATCGAT 2 cut(s) 739, 1154
BtgZI GCGATG 2 cut(s) 344, 612
BtsCI GGATG 3 cut(s) 418, 993, 997
BtsIMutI CAGTG 1 cut(s) 247
Cac8I GCNNGC 6 cut(s) 264, 277, 311, 820, 1113, 1128
CciI TCATGA 1 cut(s) 1141
CfoI GCGC 4 cut(s) 186, 277, 279, 396
Cfr10I RCCGGY 1 cut(s) 818
Cfr13I GGNCC 3 cut(s) 853, 1051, 1260
ClaI ATCGAT 2 cut(s) 739, 1154
Csp6I GTAC 1 cut(s) 514
CviAII CATG 7 cut(s) 43, 61, 133, 455, 1142, 1179, 1239
CviQI GTAC 1 cut(s) 514
DdeI CTNAG 3 cut(s) 284, 648, 1184
DpnI GATC 5 cut(s) 126, 1002, 1153, 1157, 1211
DpnII GATC 5 cut(s) 124, 1000, 1151, 1155, 1209
EaeI YGGCCR 2 cut(s) 431, 712
Eam1104I CTCTTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 226
Ecl136II GAGCTC 1 cut(s) 331
Eco24I GRGCYC 2 cut(s) 221, 333
Eco31I GGTCTC 2 cut(s) 11, 56
Eco47I GGWCC 3 cut(s) 853, 1051, 1260
Eco53kI GAGCTC 1 cut(s) 331
Eco57I CTGAAG 2 cut(s) 674, 931
EcoICRI GAGCTC 1 cut(s) 331
EcoO109I RGGNCCY 1 cut(s) 853
EcoRII CCWGG 1 cut(s) 717
EcoT38I GRGCYC 2 cut(s) 221, 333
FaeI CATG 7 cut(s) 46, 64, 136, 458, 1145, 1182, 1242
FatI CATG 7 cut(s) 42, 60, 132, 454, 1141, 1178, 1238
FauNDI CATATG 1 cut(s) 428
FbaI TGATCA 1 cut(s) 1000
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 3 cut(s) 425, 1000, 1004
FriOI GRGCYC 2 cut(s) 221, 333
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 1 cut(s) 857
GlaI GCGC 4 cut(s) 185, 276, 278, 395
GluI GCNGC 1 cut(s) 273
GsuI CTGGAG 1 cut(s) 834
HaeII RGCGCY 2 cut(s) 187, 397
HaeIII GGCC 3 cut(s) 67, 433, 714
HapII CCGG 5 cut(s) 90, 116, 434, 819, 1166
HhaI GCGC 4 cut(s) 186, 277, 279, 396
Hin1I GRCGYC 1 cut(s) 1235
Hin1II CATG 7 cut(s) 46, 64, 136, 458, 1145, 1182, 1242
Hin6I GCGC 4 cut(s) 184, 275, 277, 394
HinP1I GCGC 4 cut(s) 184, 275, 277, 394
HindIII AAGCTT 1 cut(s) 1031
HinfI GANTC 4 cut(s) 577, 610, 830, 1188
HpaII CCGG 5 cut(s) 90, 116, 434, 819, 1166
HphI GGTGA 3 cut(s) 157, 1018, 1185
Hpy188I TCNGA 5 cut(s) 80, 287, 609, 651, 693
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 4 cut(s) 41, 66, 290, 882
HpyCH4III ACNGT 2 cut(s) 508, 549
HpyCH4IV ACGT 2 cut(s) 920, 1235
HpyCH4V TGCA 7 cut(s) 233, 535, 595, 679, 698, 769, 1130
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 393, 628
HpyF3I CTNAG 3 cut(s) 284, 648, 1184
HpySE526I ACGT 2 cut(s) 920, 1235
Hsp92I GRCGYC 1 cut(s) 1235
Hsp92II CATG 7 cut(s) 46, 64, 136, 458, 1145, 1182, 1242
HspAI GCGC 4 cut(s) 184, 275, 277, 394
KroI GCCGGC 1 cut(s) 818
KroNI GCCGGC 1 cut(s) 820
Ksp22I TGATCA 1 cut(s) 1000
Kzo9I GATC 5 cut(s) 124, 1000, 1151, 1155, 1209
LguI GCTCTTC 1 cut(s) 226
LmnI GCTCC 2 cut(s) 80, 815
LweI GCATC 2 cut(s) 76, 1113
MaeI CTAG 1 cut(s) 857
MaeII ACGT 2 cut(s) 920, 1235
MaeIII GTNAC 2 cut(s) 145, 994
MalI GATC 5 cut(s) 126, 1002, 1153, 1157, 1211
MboI GATC 5 cut(s) 124, 1000, 1151, 1155, 1209
MfeI CAATTG 2 cut(s) 536, 966
MhlI GDGCHC 2 cut(s) 221, 333
MlsI TGGCCA 1 cut(s) 714
MluCI AATT 9 cut(s) 98, 438, 536, 590, 670, 728, 804, 966, 1086
MluNI TGGCCA 1 cut(s) 714
MlyI GAGTC 1 cut(s) 619
MmeI TCCRAC 3 cut(s) 117, 321, 531
Mox20I TGGCCA 1 cut(s) 714
MroNI GCCGGC 1 cut(s) 818
MroXI GAANNNNTTC 1 cut(s) 603
MscI TGGCCA 1 cut(s) 714
MseI TTAA 2 cut(s) 305, 825
Msp20I TGGCCA 1 cut(s) 714
MspCI CTTAAG 1 cut(s) 304
MspI CCGG 5 cut(s) 90, 116, 434, 819, 1166
MspR9I CCNGG 3 cut(s) 117, 719, 1167
MunI CAATTG 2 cut(s) 536, 966
Mva1269I GAATGC 3 cut(s) 233, 603, 700
MvaI CCWGG 1 cut(s) 719
MvnI CGCG 3 cut(s) 275, 277, 1049
MwoI GCNNNNNNNGC 3 cut(s) 272, 393, 628
NaeI GCCGGC 1 cut(s) 820
NciI CCSGG 2 cut(s) 117, 1167
NdeI CATATG 1 cut(s) 428
NdeII GATC 5 cut(s) 124, 1000, 1151, 1155, 1209
NgoMIV GCCGGC 1 cut(s) 818
NlaIII CATG 7 cut(s) 46, 64, 136, 458, 1145, 1182, 1242
NlaIV GGNNCC 3 cut(s) 162, 817, 939
NmeAIII GCCGAG 2 cut(s) 520, 589
NmuCI GTSAC 1 cut(s) 145
NspI RCATGY 1 cut(s) 136
PagI TCATGA 1 cut(s) 1141
PauI GCGCGC 1 cut(s) 275
PciI ACATGT 1 cut(s) 132
PciSI GCTCTTC 1 cut(s) 226
PctI GAATGC 3 cut(s) 233, 603, 700
PdiI GCCGGC 1 cut(s) 820
PdmI GAANNNNTTC 1 cut(s) 603
PfeI GAWTC 3 cut(s) 577, 830, 1188
PflMI CCANNNNNTGG 1 cut(s) 1230
PkrI GCNGC 1 cut(s) 274
PleI GAGTC 1 cut(s) 618
PpsI GAGTC 1 cut(s) 618
PpuMI RGGWCCY 1 cut(s) 853
PscI ACATGT 1 cut(s) 132
Psp124BI GAGCTC 1 cut(s) 333
Psp1406I AACGTT 1 cut(s) 920
Psp5II RGGWCCY 1 cut(s) 853
Psp6I CCWGG 1 cut(s) 717
PspGI CCWGG 1 cut(s) 717
PspN4I GGNNCC 3 cut(s) 162, 817, 939
PspPI GGNCC 3 cut(s) 853, 1051, 1260
PspPPI RGGWCCY 1 cut(s) 853
PteI GCGCGC 1 cut(s) 275
RsaI GTAC 1 cut(s) 515
RsaNI GTAC 1 cut(s) 514
SacI GAGCTC 1 cut(s) 333
SapI GCTCTTC 1 cut(s) 226
SaqAI TTAA 2 cut(s) 305, 825
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 5 cut(s) 124, 1000, 1151, 1155, 1209
Sau96I GGNCC 3 cut(s) 853, 1051, 1260
SchI GAGTC 1 cut(s) 619
ScrFI CCNGG 3 cut(s) 117, 719, 1167
SduI GDGCHC 2 cut(s) 221, 333
SfaNI GCATC 2 cut(s) 76, 1113
SinI GGWCC 3 cut(s) 853, 1051, 1260
SmlI CTYRAG 3 cut(s) 304, 332, 834
SmoI CTYRAG 3 cut(s) 304, 332, 834
Sse9I AATT 9 cut(s) 98, 438, 536, 590, 670, 728, 804, 966, 1086
SsiI CCGC 3 cut(s) 273, 733, 1049
SspMI CTAG 1 cut(s) 857
SstI GAGCTC 1 cut(s) 333
StyD4I CCNGG 3 cut(s) 115, 717, 1165
TaaI ACNGT 2 cut(s) 508, 549
TaiI ACGT 2 cut(s) 923, 1238
TaqI TCGA 8 cut(s) 30, 192, 297, 404, 615, 739, 914, 1154
TaqII GACCGA 1 cut(s) 35
TasI AATT 9 cut(s) 98, 438, 536, 590, 670, 728, 804, 966, 1086
TauI GCSGC 1 cut(s) 275
TfiI GAWTC 3 cut(s) 577, 830, 1188
Tru1I TTAA 2 cut(s) 305, 825
Tru9I TTAA 2 cut(s) 305, 825
TscAI CASTG 1 cut(s) 254
TseFI GTSAC 1 cut(s) 145
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 142, 429
TspRI CASTG 1 cut(s) 254
Van91I CCANNNNNTGG 1 cut(s) 1230
Vha464I CTTAAG 1 cut(s) 304
VpaK11BI GGWCC 3 cut(s) 853, 1051, 1260
XapI RAATTY 1 cut(s) 804
XceI RCATGY 1 cut(s) 136
XcmI CCANNNNNNNNNTGG 2 cut(s) 406, 1203
XmnI GAANNNNTTC 1 cut(s) 603
XspI CTAG 1 cut(s) 857
ZraI GACGTC 1 cut(s) 1236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.