pycom08g04500
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Forward (+)
3423959 .. 3425032
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 777 bp
ATGCAAAACCATCCTGATGCTCGATCATATAGAGTTAAAACTATACCAGGCTACAACAAATTGTGTGTTATTTTTCGAGAAGAAACTTATGATGGAAGATACAGTCGTTTGGCGTGCAATTCAGATCCATATGGTGAATTAGCAGATTTTGAGGACTGGTATGCTATCGTTACTTTCTCAAAAGACAATTTAGTTGATTTGCATCGTGGGAACAAGGTTAATCACACATTCAGTGAGGAAGCATGGTGTGACAAACACGCTCTAAAAGATCGATATGTATGCTTGGTGAAGCAGCATGACTACATCAGCAGTCTTCTCACTCATAGTGGATTTATGTGGGATGAAACTCAACAAATGATAACCGCTGAGGATGACATTTGGGAAGCTTACATTAAGGTGAACCGACCAACTTGTTATAGCGATTTGAGCAAGATTGGCGTAAATAGAAAGTTCGACGGAAAATTCAGTAGGCAGGCATCAGGAGATCTGCAATTGTTAGCCGAGGACATTGAAATATCCGATCAACAGAGAAAGCGACCAACTGTGGCATCACCAAACACGGGACACTCCAAAAAAGCACAGAAAATGGGCAAGGATACGCAAAAGCCTCCAACGGAGATGGTAGGTCGGGTTGCGAAACTCGTAGACAATGAGGAGAAAAATAACTACACATCAATGGAAAAGGCAATCAATGCACTTCAAGCTTCAGCAGATATGGATGATGGTGCGTGTGGTCTATTAGAAAATGAGAGAAAAGCAGACATTCCTGGCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

259

Amino Acids

29.46

Weight (kDa)

5.7

Isoelectric Point (pI)

31.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 80 - 130 7e-10 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 645
AciI CCGC 1 cut(s) 363
AclWI GGATC 1 cut(s) 119
AcsI RAATTY 1 cut(s) 461
AcuI CTGAAG 1 cut(s) 690
AfiI CCNNNNNNNGG 1 cut(s) 560
AgsI TTSAA 2 cut(s) 512, 701
AjnI CCWGG 2 cut(s) 46, 766
AluBI AGCT 2 cut(s) 386, 704
AluI AGCT 2 cut(s) 386, 704
AlwI GGATC 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 292
ApoI RAATTY 1 cut(s) 461
AsuHPI GGTGA 4 cut(s) 146, 298, 409, 543
BaeI ACNNNNGTAYC 2 cut(s) 91, 124
BbsI GAAGAC 1 cut(s) 305
BbvCI CCTCAGC 1 cut(s) 366
BbvI GCAGC 1 cut(s) 304
BccI CCATC 4 cut(s) 18, 86, 613, 716
BcgI CGANNNNNNTGC 2 cut(s) 261, 295
BciT130I CCWGG 2 cut(s) 48, 768
BciVI GTATCC 1 cut(s) 589
BfuI GTATCC 1 cut(s) 589
BglII AGATCT 1 cut(s) 484
BisI GCNGC 1 cut(s) 293
BlsI GCNGC 1 cut(s) 294
Bme1390I CCNGG 2 cut(s) 48, 768
BmrFI CCNGG 2 cut(s) 48, 768
BmsI GCATC 4 cut(s) 7, 211, 485, 557
BpiI GAAGAC 1 cut(s) 305
Bpu10I CCTNAGC 1 cut(s) 366
Bsa29I ATCGAT 1 cut(s) 271
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 501
Bsc4I CCNNNNNNNGG 1 cut(s) 560
Bse1I ACTGG 1 cut(s) 161
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 2 cut(s) 48, 768
BseCI ATCGAT 1 cut(s) 271
BseDI CCNNGG 1 cut(s) 501
BseGI GGATG 4 cut(s) 10, 346, 376, 724
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 560
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 1 cut(s) 161
BseRI GAGGAG 1 cut(s) 668
BseXI GCAGC 1 cut(s) 304
BshVI ATCGAT 1 cut(s) 271
BslFI GGGAC 1 cut(s) 576
BslI CCNNNNNNNGG 1 cut(s) 560
BsmFI GGGAC 1 cut(s) 576
Bsp143I GATC 5 cut(s) 23, 124, 268, 484, 520
BspACI CCGC 1 cut(s) 363
BspCNI CTCAG 1 cut(s) 358
BspDI ATCGAT 1 cut(s) 271
BspPI GGATC 1 cut(s) 119
BsrI ACTGG 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 501
BssMI GATC 5 cut(s) 23, 124, 268, 484, 520
Bst2UI CCWGG 2 cut(s) 48, 768
Bst4CI ACNGT 2 cut(s) 104, 544
BstAPI GCANNNNNTGC 1 cut(s) 692
BstC8I GCNNGC 2 cut(s) 115, 474
BstDEI CTNAG 1 cut(s) 366
BstF5I GGATG 4 cut(s) 10, 346, 376, 724
BstKTI GATC 5 cut(s) 26, 127, 271, 487, 523
BstMBI GATC 5 cut(s) 23, 124, 268, 484, 520
BstMWI GCNNNNNNNGC 4 cut(s) 426, 435, 692, 701
BstNI CCWGG 2 cut(s) 48, 768
BstSCI CCNGG 2 cut(s) 46, 766
BstV1I GCAGC 1 cut(s) 304
BstV2I GAAGAC 1 cut(s) 305
BstX2I RGATCY 2 cut(s) 124, 484
BstYI RGATCY 2 cut(s) 124, 484
Bsu15I ATCGAT 1 cut(s) 271
BsuI GTATCC 1 cut(s) 589
BsuTUI ATCGAT 1 cut(s) 271
BtsCI GGATG 4 cut(s) 10, 346, 376, 724
BtsIMutI CAGTG 1 cut(s) 238
Cac8I GCNNGC 2 cut(s) 115, 474
ClaI ATCGAT 1 cut(s) 271
CviAII CATG 2 cut(s) 243, 296
CviJI RGCY 6 cut(s) 51, 386, 500, 607, 704, 771
CviKI_1 RGCY 6 cut(s) 51, 386, 500, 607, 704, 771
DdeI CTNAG 1 cut(s) 366
DpnI GATC 5 cut(s) 25, 126, 270, 486, 522
DpnII GATC 5 cut(s) 23, 124, 268, 484, 520
Eco57I CTGAAG 1 cut(s) 690
EcoRII CCWGG 2 cut(s) 46, 766
FaeI CATG 2 cut(s) 246, 299
FaqI GGGAC 1 cut(s) 576
FatI CATG 2 cut(s) 242, 295
FauNDI CATATG 1 cut(s) 130
FblI GTMKAC 1 cut(s) 645
Fnu4HI GCNGC 1 cut(s) 293
FokI GGATG 3 cut(s) 353, 383, 731
Fsp4HI GCNGC 1 cut(s) 293
GluI GCNGC 1 cut(s) 293
Hin1II CATG 2 cut(s) 246, 299
HindIII AAGCTT 2 cut(s) 384, 702
HphI GGTGA 4 cut(s) 146, 298, 409, 543
Hpy166II GTNNAC 2 cut(s) 400, 646
Hpy188I TCNGA 2 cut(s) 124, 520
Hpy188III TCNNGA 3 cut(s) 14, 77, 480
Hpy8I GTNNAC 2 cut(s) 400, 646
Hpy99I CGWCG 1 cut(s) 458
HpyCH4III ACNGT 2 cut(s) 104, 544
HpyCH4V TGCA 5 cut(s) 4, 117, 202, 490, 695
HpyF10VI GCNNNNNNNGC 4 cut(s) 426, 435, 692, 701
HpyF3I CTNAG 1 cut(s) 366
Hsp92II CATG 2 cut(s) 246, 299
Kzo9I GATC 5 cut(s) 23, 124, 268, 484, 520
LpnPI CCDG 7 cut(s) 27, 33, 60, 142, 458, 465, 753
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 4 cut(s) 7, 211, 485, 557
MaeIII GTNAC 2 cut(s) 169, 248
MalI GATC 5 cut(s) 25, 126, 270, 486, 522
MboI GATC 5 cut(s) 23, 124, 268, 484, 520
MboII GAAGA 3 cut(s) 92, 108, 305
MfeI CAATTG 1 cut(s) 491
MflI RGATCY 2 cut(s) 124, 484
MluCI AATT 6 cut(s) 59, 118, 137, 187, 461, 491
MmeI TCCRAC 1 cut(s) 635
MnlI CCTC 6 cut(s) 145, 229, 361, 496, 618, 646
MseI TTAA 3 cut(s) 36, 219, 393
MslI CAYNNNNRTG 3 cut(s) 15, 395, 674
MspA1I CMGCKG 1 cut(s) 365
MspR9I CCNGG 2 cut(s) 48, 768
MunI CAATTG 1 cut(s) 491
MvaI CCWGG 2 cut(s) 48, 768
MwoI GCNNNNNNNGC 4 cut(s) 426, 435, 692, 701
NdeI CATATG 1 cut(s) 130
NdeII GATC 5 cut(s) 23, 124, 268, 484, 520
NlaIII CATG 2 cut(s) 246, 299
NmeAIII GCCGAG 1 cut(s) 526
NmuCI GTSAC 1 cut(s) 248
PkrI GCNGC 1 cut(s) 294
Psp6I CCWGG 2 cut(s) 46, 766
PspGI CCWGG 2 cut(s) 46, 766
PsuI RGATCY 2 cut(s) 124, 484
RseI CAYNNNNRTG 3 cut(s) 15, 395, 674
SaqAI TTAA 3 cut(s) 36, 219, 393
SatI GCNGC 1 cut(s) 293
Sau3AI GATC 5 cut(s) 23, 124, 268, 484, 520
ScrFI CCNGG 2 cut(s) 48, 768
SetI ASST 5 cut(s) 219, 388, 399, 628, 706
SfaNI GCATC 4 cut(s) 7, 211, 485, 557
SmiMI CAYNNNNRTG 3 cut(s) 15, 395, 674
Sse9I AATT 6 cut(s) 59, 118, 137, 187, 461, 491
SsiI CCGC 1 cut(s) 363
StyD4I CCNGG 2 cut(s) 46, 766
TaaI ACNGT 2 cut(s) 104, 544
TaqI TCGA 4 cut(s) 22, 76, 271, 453
TasI AATT 6 cut(s) 59, 118, 137, 187, 461, 491
Tru1I TTAA 3 cut(s) 36, 219, 393
Tru9I TTAA 3 cut(s) 36, 219, 393
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 1 cut(s) 248
TseI GCWGC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 1 cut(s) 357
TspGWI ACGGA 2 cut(s) 471, 629
TspRI CASTG 1 cut(s) 238
XapI RAATTY 1 cut(s) 461
XmiI GTMKAC 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.