pycom08g05050

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Forward (+)
3877836 .. 3878027
192 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 192 bp
ATGGCAGACAAACCCAGCCGAGCTCTGGTTCTGTACGGAGATGGGTCGGCCCAGTTCGTCGACCCGTCACATACCCATCTCCACTCTCTCGTTTCCAAAGCTTCATGTGGATTCTTGAGCCTCCCCATTGCCCCTCCCTCAGGTTTTCAATCTCCATCTCTTTTTGTGCAAATTCTTACCTTTGAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

6.73

Weight (kDa)

6.22

Isoelectric Point (pI)

53.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 60
AcsI RAATTY 1 cut(s) 171
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 2 cut(s) 25, 140
AgsI TTSAA 2 cut(s) 149, 185
AluBI AGCT 2 cut(s) 23, 101
AluI AGCT 2 cut(s) 23, 101
Alw21I GWGCWC 1 cut(s) 25
AoxI GGCC 1 cut(s) 48
ApoI RAATTY 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 49
AxyI CCTNAGG 1 cut(s) 139
BanII GRGCYC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 25
BccI CCATC 3 cut(s) 35, 84, 163
BmgT120I GGNCC 1 cut(s) 49
BmrI ACTGGG 1 cut(s) 46
BmuI ACTGGG 1 cut(s) 46
BpuEI CTTGAG 1 cut(s) 136
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 140
Bse1I ACTGG 1 cut(s) 52
Bse21I CCTNAGG 1 cut(s) 139
Bse3DI GCAATG 1 cut(s) 126
BseLI CCNNNNNNNGG 2 cut(s) 25, 140
BseMI GCAATG 1 cut(s) 126
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 52
BseYI CCCAGC 1 cut(s) 14
BshFI GGCC 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 25
BslI CCNNNNNNNGG 2 cut(s) 25, 140
BsnI GGCC 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 25
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 126
BsrI ACTGG 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 139
BstENI CCTNNNNNAGG 1 cut(s) 138
Bsu36I CCTNAGG 1 cut(s) 139
BsuRI GGCC 1 cut(s) 50
Cfr13I GGNCC 1 cut(s) 49
Csp6I GTAC 1 cut(s) 34
CviAII CATG 1 cut(s) 105
CviJI RGCY 5 cut(s) 18, 23, 50, 101, 120
CviKI_1 RGCY 5 cut(s) 18, 23, 50, 101, 120
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 1 cut(s) 139
Ecl136II GAGCTC 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 25
Eco53kI GAGCTC 1 cut(s) 23
Eco81I CCTNAGG 1 cut(s) 139
EcoICRI GAGCTC 1 cut(s) 23
EcoNI CCTNNNNNAGG 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 25
FaeI CATG 1 cut(s) 108
FaiI YATR 2 cut(s) 72, 106
FatI CATG 1 cut(s) 104
FblI GTMKAC 1 cut(s) 60
FriOI GRGCYC 1 cut(s) 25
GsaI CCCAGC 1 cut(s) 18
HaeIII GGCC 1 cut(s) 50
Hin1II CATG 1 cut(s) 108
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HindIII AAGCTT 1 cut(s) 99
HinfI GANTC 1 cut(s) 111
Hpy166II GTNNAC 1 cut(s) 61
Hpy188III TCNNGA 1 cut(s) 115
Hpy8I GTNNAC 1 cut(s) 61
Hpy99I CGWCG 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 169
HpyF3I CTNAG 1 cut(s) 139
Hsp92II CATG 1 cut(s) 108
LpnPI CCDG 4 cut(s) 11, 28, 65, 126
MaeIII GTNAC 1 cut(s) 66
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 1 cut(s) 171
MnlI CCTC 3 cut(s) 131, 144, 148
NlaIII CATG 1 cut(s) 108
NmeAIII GCCGAG 1 cut(s) 44
NmuCI GTSAC 1 cut(s) 66
PfeI GAWTC 1 cut(s) 111
Psp124BI GAGCTC 1 cut(s) 25
PspFI CCCAGC 1 cut(s) 14
PspPI GGNCC 1 cut(s) 49
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SacI GAGCTC 1 cut(s) 25
SalI GTCGAC 1 cut(s) 59
Sau96I GGNCC 1 cut(s) 49
SduI GDGCHC 1 cut(s) 25
SetI ASST 4 cut(s) 25, 103, 145, 182
SgeI CNNG 9 cut(s) 27, 32, 38, 64, 76, 101, 117, 127, 153
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
Sse9I AATT 1 cut(s) 171
SstI GAGCTC 1 cut(s) 25
TaqI TCGA 1 cut(s) 60
TasI AATT 1 cut(s) 171
TfiI GAWTC 1 cut(s) 111
TseFI GTSAC 1 cut(s) 66
Tsp45I GTSAC 1 cut(s) 66
TspDTI ATGAA 1 cut(s) 93
TspGWI ACGGA 1 cut(s) 51
XagI CCTNNNNNAGG 1 cut(s) 138
XapI RAATTY 1 cut(s) 171
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XmiI GTMKAC 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.