pycom08g05460

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Forward (+)
4185835 .. 4186365
531 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 207 bp
ATGCGCCAGCAAATACTCAAGAAACGAACAGATTTGGGAGATCTCCCACCAAAGCCAAAGCTGAAGAATGGGAGATCTAGCCCAAAGCAGCATGAAATACCTACATCGAGGTCCAATGTTGAAAGCATTGATGATGATCAATATAGTCAAAAGGTGGATAAGCTGTCCTTGAAGAAAAAAAGTGATAGGATCAGAGGCAAGAGCTGA

Protein Analysis

69

Amino Acids

7.83

Weight (kDa)

10.19

Isoelectric Point (pI)

45.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 83
AgsI TTSAA 2 cut(s) 122, 172
AluBI AGCT 3 cut(s) 61, 163, 204
AluI AGCT 3 cut(s) 61, 163, 204
AlwI GGATC 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 88
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 111
AvaII GGWCC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 100
BclI TGATCA 1 cut(s) 136
BfaI CTAG 1 cut(s) 78
BglII AGATCT 2 cut(s) 40, 74
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
Bme18I GGWCC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 111
BsaBI GATNNNNATC 1 cut(s) 135
Bse8I GATNNNNATC 1 cut(s) 135
BseJI GATNNNNATC 1 cut(s) 135
BseXI GCAGC 1 cut(s) 100
Bsp143I GATC 4 cut(s) 40, 74, 136, 189
BspPI GGATC 1 cut(s) 197
BssMI GATC 4 cut(s) 40, 74, 136, 189
BstC8I GCNNGC 1 cut(s) 8
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 4 cut(s) 43, 77, 139, 192
BstMBI GATC 4 cut(s) 40, 74, 136, 189
BstV1I GCAGC 1 cut(s) 100
BstX2I RGATCY 2 cut(s) 40, 74
BstYI RGATCY 2 cut(s) 40, 74
Cac8I GCNNGC 1 cut(s) 8
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 111
CviAII CATG 1 cut(s) 92
CviJI RGCY 5 cut(s) 55, 61, 81, 163, 204
CviKI_1 RGCY 5 cut(s) 55, 61, 81, 163, 204
DpnI GATC 4 cut(s) 42, 76, 138, 191
DpnII GATC 4 cut(s) 40, 74, 136, 189
Eco47I GGWCC 1 cut(s) 111
Eco57I CTGAAG 1 cut(s) 83
FaeI CATG 1 cut(s) 95
FaiI YATR 2 cut(s) 93, 144
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FatI CATG 1 cut(s) 91
FbaI TGATCA 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 89
FspBI CTAG 1 cut(s) 78
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 89
HhaI GCGC 1 cut(s) 6
Hin1II CATG 1 cut(s) 95
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
Hpy188I TCNGA 1 cut(s) 194
Hpy188III TCNNGA 1 cut(s) 19
Hsp92II CATG 1 cut(s) 95
HspAI GCGC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 4 cut(s) 40, 74, 136, 189
LpnPI CCDG 1 cut(s) 20
Lsp1109I GCAGC 1 cut(s) 100
MaeI CTAG 1 cut(s) 78
MalI GATC 4 cut(s) 42, 76, 138, 191
MboI GATC 4 cut(s) 40, 74, 136, 189
MboII GAAGA 2 cut(s) 76, 184
MflI RGATCY 2 cut(s) 40, 74
MnlI CCTC 2 cut(s) 102, 188
NdeII GATC 4 cut(s) 40, 74, 136, 189
NlaIII CATG 1 cut(s) 95
PkrI GCNGC 1 cut(s) 90
PspPI GGNCC 1 cut(s) 111
PsuI RGATCY 2 cut(s) 40, 74
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 4 cut(s) 40, 74, 136, 189
Sau96I GGNCC 1 cut(s) 111
SetI ASST 6 cut(s) 63, 103, 113, 156, 165, 206
SgeI CNNG 6 cut(s) 19, 31, 90, 104, 120, 181
SinI GGWCC 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
SspMI CTAG 1 cut(s) 78
TaqI TCGA 1 cut(s) 107
TseI GCWGC 1 cut(s) 88
TspDTI ATGAA 1 cut(s) 108
VpaK11BI GGWCC 1 cut(s) 111
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.