pycom08g05570

aminopeptidase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Forward (+)
4244731 .. 4245225
495 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 270 bp
ATGAAGGATAACTGGGAGCACATCTCAAAGACCTGGGGGTCTGGATTTCTAATTACTCGCTTTGTCAGTGCAATTGTTTCACCGTTTGCTTCGTTTGACAAGGTTAAGGAAGTAGATGAGTTCTTCAAAGCACATCCCAACCCGAAGATAACTAGAACAGTGAAGCAGAGCATTGAGCGGGTGCAAATCAACGCCAAGTGGGTTCAGAGTGTTCAGAGCGAGAGAAACCTTGCCGATGTCGCGACGGAGTTGGCGTACCCGAAATACTAG

Protein Analysis

90

Amino Acids

10.29

Weight (kDa)

9.35

Isoelectric Point (pI)

36.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERAP1_C PF11838 1 - 62 5.4e-14 ERAP1-like C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 37
AccBSI CCGCTC 1 cut(s) 178
AccII CGCG 1 cut(s) 242
AciI CCGC 1 cut(s) 178
AfaI GTAC 1 cut(s) 257
AgsI TTSAA 1 cut(s) 127
AjnI CCWGG 1 cut(s) 32
Alw21I GWGCWC 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 21
BciT130I CCWGG 1 cut(s) 34
BfaI CTAG 2 cut(s) 153, 268
Bme1390I CCNGG 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 34
BmrI ACTGGG 1 cut(s) 22
BmuI ACTGGG 1 cut(s) 22
BplI GAGNNNNNCTC 2 cut(s) 8, 40
BsaJI CCNNGG 1 cut(s) 33
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bse1I ACTGG 1 cut(s) 17
BseBI CCWGG 1 cut(s) 34
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 17
Bsh1236I CGCG 1 cut(s) 242
BsiHKAI GWGCWC 1 cut(s) 21
Bsp1286I GDGCHC 1 cut(s) 21
Bsp68I TCGCGA 1 cut(s) 242
BspACI CCGC 1 cut(s) 178
BspFNI CGCG 1 cut(s) 242
BsrBI CCGCTC 1 cut(s) 178
BsrI ACTGG 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 34
Bst4CI ACNGT 2 cut(s) 84, 160
BstF5I GGATG 1 cut(s) 133
BstFNI CGCG 1 cut(s) 242
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNI CCWGG 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 32
BstUI CGCG 1 cut(s) 242
BtsCI GGATG 1 cut(s) 133
BtsIMutI CAGTG 2 cut(s) 73, 165
BtuMI TCGCGA 1 cut(s) 242
Csp6I GTAC 1 cut(s) 256
CviQI GTAC 1 cut(s) 256
DrdI GACNNNNNNGTC 1 cut(s) 37
DseDI GACNNNNNNGTC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 32
FauI CCCGC 1 cut(s) 171
FokI GGATG 1 cut(s) 120
FspBI CTAG 2 cut(s) 153, 268
HphI GGTGA 1 cut(s) 72
Hpy188I TCNGA 2 cut(s) 207, 216
Hpy188III TCNNGA 2 cut(s) 42, 241
Hpy99I CGWCG 1 cut(s) 247
HpyCH4III ACNGT 2 cut(s) 84, 160
HpyCH4V TGCA 2 cut(s) 71, 184
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 3 cut(s) 19, 27, 46
MaeI CTAG 2 cut(s) 153, 268
MbiI CCGCTC 1 cut(s) 178
MboII GAAGA 2 cut(s) 115, 157
MfeI CAATTG 1 cut(s) 72
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 2 cut(s) 51, 72
MseI TTAA 1 cut(s) 105
MspR9I CCNGG 1 cut(s) 34
MunI CAATTG 1 cut(s) 72
MvaI CCWGG 1 cut(s) 34
MvnI CGCG 1 cut(s) 242
MwoI GCNNNNNNNGC 1 cut(s) 239
NruI TCGCGA 1 cut(s) 242
PcsI WCGNNNNNNNCGW 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 32
PspGI CCWGG 1 cut(s) 32
RruI TCGCGA 1 cut(s) 242
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SaqAI TTAA 1 cut(s) 105
ScrFI CCNGG 1 cut(s) 34
SduI GDGCHC 1 cut(s) 21
SetI ASST 3 cut(s) 35, 105, 231
Sse9I AATT 2 cut(s) 51, 72
SsiI CCGC 1 cut(s) 178
SspMI CTAG 2 cut(s) 153, 268
StyD4I CCNGG 1 cut(s) 32
TaaI ACNGT 2 cut(s) 84, 160
TasI AATT 2 cut(s) 51, 72
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 2 cut(s) 73, 165
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 260
TspRI CASTG 2 cut(s) 73, 165
XspI CTAG 2 cut(s) 153, 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.