pycom08g05650

isoform X1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Forward (+)
4278088 .. 4278574
487 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 378 bp
ATGGAGGCCTCGCTGCAGCAAGTAGACCAACTTGAGTGTGATTTAGGCGTTCTATTCTTTCAAGCTTTGATCAAGGTGTCTAAACTCACGAAGTGTCTGGCGAATGGGCCAAATCACAGAGAGACTGCTTCTCTCGGTGTCTTTATTTCTTGTTGTAACCTAAATCTCGTTTCCACACTGACGAATGGGCCAAGGCACAACAAAATCAACGTTGCAGGTCCGTGTCATTCTTTTAGAGCATTCCTGCTTTGGATCTGGGACTGCTTCTGCAAGATTAGATCATTTGCTCCCATATTCTGCCCCAGAATTGTAGATTTGATTGGAAATCTTTGTTTTGTTGAAATACGGTGCCAATTTTGCCAGCACGGAGAGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

14.05

Weight (kDa)

8.03

Isoelectric Point (pI)

24.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 206
AccB1I GGYRCC 1 cut(s) 348
AccI GTMKAC 1 cut(s) 24
AclI AACGTT 1 cut(s) 210
AclWI GGATC 1 cut(s) 260
AdeI CACNNNGTG 1 cut(s) 93
AgsI TTSAA 2 cut(s) 62, 341
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
Alw26I GTCTC 2 cut(s) 116, 365
AlwI GGATC 1 cut(s) 260
AoxI GGCC 3 cut(s) 6, 107, 188
ApeKI GCWGC 2 cut(s) 13, 16
AspS9I GGNCC 3 cut(s) 107, 188, 218
AvaII GGWCC 1 cut(s) 218
BanI GGYRCC 1 cut(s) 348
BbvI GCAGC 1 cut(s) 28
BclI TGATCA 1 cut(s) 69
BcoDI GTCTC 2 cut(s) 116, 365
BfmI CTRYAG 1 cut(s) 14
BfuAI ACCTGC 1 cut(s) 206
BisI GCNGC 2 cut(s) 14, 17
BlsI GCNGC 2 cut(s) 15, 18
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 3 cut(s) 107, 188, 218
BmiI GGNNCC 1 cut(s) 350
BpuEI CTTGAG 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 28
BshFI GGCC 3 cut(s) 8, 109, 190
BshNI GGYRCC 1 cut(s) 348
BslFI GGGAC 1 cut(s) 272
BsmAI GTCTC 2 cut(s) 116, 365
BsmFI GGGAC 1 cut(s) 272
BsmI GAATGC 1 cut(s) 239
BsnI GGCC 3 cut(s) 8, 109, 190
Bsp143I GATC 3 cut(s) 69, 252, 278
BspANI GGCC 3 cut(s) 8, 109, 190
BspLI GGNNCC 1 cut(s) 350
BspMAI CTGCAG 1 cut(s) 18
BspMI ACCTGC 1 cut(s) 206
BspPI GGATC 1 cut(s) 260
BspT107I GGYRCC 1 cut(s) 348
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 3 cut(s) 69, 252, 278
BssT1I CCWWGG 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 348
BstC8I GCNNGC 1 cut(s) 362
BstKTI GATC 3 cut(s) 72, 255, 281
BstMAI GTCTC 2 cut(s) 116, 365
BstMBI GATC 3 cut(s) 69, 252, 278
BstMWI GCNNNNNNNGC 1 cut(s) 357
BstSFI CTRYAG 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 28
BstX2I RGATCY 1 cut(s) 252
BstYI RGATCY 1 cut(s) 252
BsuRI GGCC 3 cut(s) 8, 109, 190
BtsIMutI CAGTG 1 cut(s) 176
BveI ACCTGC 1 cut(s) 206
Cac8I GCNNGC 1 cut(s) 362
Cfr13I GGNCC 3 cut(s) 107, 188, 218
CviJI RGCY 4 cut(s) 8, 65, 109, 190
CviKI_1 RGCY 4 cut(s) 8, 65, 109, 190
DpnI GATC 3 cut(s) 71, 254, 280
DpnII GATC 3 cut(s) 69, 252, 278
DraIII CACNNNGTG 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 191
Eco147I AGGCCT 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 191
ErhI CCWWGG 1 cut(s) 191
FaiI YATR 1 cut(s) 293
FaqI GGGAC 1 cut(s) 272
FbaI TGATCA 1 cut(s) 69
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 14, 17
Fsp4HI GCNGC 2 cut(s) 14, 17
GluI GCNGC 2 cut(s) 14, 17
HaeIII GGCC 3 cut(s) 8, 109, 190
HindIII AAGCTT 1 cut(s) 63
Hpy166II GTNNAC 1 cut(s) 25
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 25
HpyCH4III ACNGT 1 cut(s) 348
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 3 cut(s) 16, 215, 270
HpyF10VI GCNNNNNNNGC 1 cut(s) 357
HpySE526I ACGT 1 cut(s) 210
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 3 cut(s) 69, 252, 278
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 6 cut(s) 83, 201, 241, 257, 316, 374
Lsp1109I GCAGC 1 cut(s) 28
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 1 cut(s) 155
MalI GATC 3 cut(s) 71, 254, 280
MboI GATC 3 cut(s) 69, 252, 278
MflI RGATCY 1 cut(s) 252
MluCI AATT 2 cut(s) 306, 353
MnlI CCTC 1 cut(s) 19
MseI TTAA 1 cut(s) 376
Mva1269I GAATGC 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 357
NdeII GATC 3 cut(s) 69, 252, 278
NlaIV GGNNCC 1 cut(s) 350
PceI AGGCCT 1 cut(s) 8
PctI GAATGC 1 cut(s) 239
PkrI GCNGC 2 cut(s) 15, 18
Psp1406I AACGTT 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 350
PspPI GGNCC 3 cut(s) 107, 188, 218
PstI CTGCAG 1 cut(s) 18
PsuI RGATCY 1 cut(s) 252
SaqAI TTAA 1 cut(s) 376
SatI GCNGC 2 cut(s) 14, 17
Sau3AI GATC 3 cut(s) 69, 252, 278
Sau96I GGNCC 3 cut(s) 107, 188, 218
SetI ASST 5 cut(s) 67, 78, 162, 213, 220
SfcI CTRYAG 1 cut(s) 14
SinI GGWCC 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 2 cut(s) 306, 353
SseBI AGGCCT 1 cut(s) 8
StuI AGGCCT 1 cut(s) 8
StyI CCWWGG 1 cut(s) 191
TaaI ACNGT 1 cut(s) 348
TaiI ACGT 1 cut(s) 213
TasI AATT 2 cut(s) 306, 353
Tru1I TTAA 1 cut(s) 376
Tru9I TTAA 1 cut(s) 376
TscAI CASTG 1 cut(s) 183
TseI GCWGC 2 cut(s) 13, 16
TspGWI ACGGA 1 cut(s) 210
TspRI CASTG 1 cut(s) 183
VpaK11BI GGWCC 1 cut(s) 218
XmiI GTMKAC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.