Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4340799 .. 4341832

Gene Structure 1034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAAAGCAGCACTATCAACACTAATCAGCTCCAAGAATCTCAACCCTCACTCCTCCTCCTCTCTCTGCCGCTCCATTTGCCTCCGCCCGAAGCCTCTCTCCCCTCCGCCGTATTTCCTATCTCCAATCGCACCCTCCAAAGCCCTCACCACCAACATCCGCATCGGTCTCAGCCGCAAGTCCCAGACCCGCTCTGCAAATTTATCGTCGGTAATGGCGTCGGTTTACAAGCCCGAAGAAGCCAGGGTCCCGCCTGCCCTTCCCCTGCCCACTCCTCCTGTCACCAAGTTTAAAATTGGGTTGTGTCAGTTGTCTGTGACGCCGGATAAGGAGAGGAACATTTCCCATGCTCGCAAGGCCATCGAGGACGCCGCCGCAAAGGGTGCCCAGCTTGTTCTTCTACCTGTCAGGAAATTTGGAATGGTCCATATTCAAATGATAGCTTCCCGGTTTATGCTGAGGACATTGATGCAGGCGGTGATGCATCTCCTTCAACAGCCATGCTGTCTGAAGTTGCTCAACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006107 GO:0006108 GO:0008150 GO:0008152 GO:0008270 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0019752 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050152 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00250 map00250

Pfam Domains

Protein Families

CN_hydrolase

Protein Analysis

176

Amino Acids

19.13

Weight (kDa)

10.56

Isoelectric Point (pI)

62.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	383
AccBSI	CCGCTC	2 cut(s)	72, 192
AclI	AACGTT	1 cut(s)	522
AcsI	RAATTY	2 cut(s)	199, 413
AcyI	GRCGYC	3 cut(s)	218, 320, 369
AgsI	TTSAA	2 cut(s)	434, 494
AjnI	CCWGG	1 cut(s)	242
AluBI	AGCT	3 cut(s)	30, 391, 443
AluI	AGCT	3 cut(s)	30, 391, 443
Alw26I	GTCTC	1 cut(s)	173
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	2 cut(s)	199, 413
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AspS9I	GGNCC	2 cut(s)	247, 424
AsuC2I	CCSGG	1 cut(s)	448
AsuHPI	GGTGA	3 cut(s)	139, 274, 490
AvaII	GGWCC	2 cut(s)	247, 424
BaeGI	GKGCMC	1 cut(s)	388
BanI	GGYRCC	1 cut(s)	383
BbvCI	CCTCAGC	1 cut(s)	458
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	1 cut(s)	368
BceAI	ACGGC	1 cut(s)	94
BcgI	CGANNNNNNTGC	4 cut(s)	186, 220, 343, 377
BciT130I	CCWGG	1 cut(s)	244
BcnI	CCSGG	1 cut(s)	448
BcoDI	GTCTC	1 cut(s)	173
BisI	GCNGC	5 cut(s)	9, 70, 175, 372, 375
BlsI	GCNGC	5 cut(s)	10, 71, 176, 373, 376
Bme1390I	CCNGG	2 cut(s)	244, 448
Bme18I	GGWCC	2 cut(s)	247, 424
BmgT120I	GGNCC	2 cut(s)	247, 424
BmiI	GGNNCC	3 cut(s)	248, 249, 385
BmrFI	CCNGG	2 cut(s)	244, 448
BmsI	GCATC	4 cut(s)	171, 459, 471, 493
Bpu10I	CCTNAGC	1 cut(s)	458
BpuMI	CCSGG	1 cut(s)	448
BsaHI	GRCGYC	3 cut(s)	218, 320, 369
BsaI	GGTCTC	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	243
BsaXI	ACNNNNNCTCC	4 cut(s)	35, 41, 65, 71
BseBI	CCWGG	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	1 cut(s)	156
BseMII	CTCAG	2 cut(s)	184, 449
BseRI	GAGGAG	4 cut(s)	43, 46, 49, 264
BseSI	GKGCMC	1 cut(s)	388
BseXI	GCAGC	1 cut(s)	20
BseYI	CCCAGC	1 cut(s)	387
BshFI	GGCC	1 cut(s)	359
BshNI	GGYRCC	1 cut(s)	383
BsiSI	CCGG	2 cut(s)	323, 448
BslFI	GGGAC	2 cut(s)	166, 233
BsmAI	GTCTC	1 cut(s)	173
BsmFI	GGGAC	2 cut(s)	166, 233
BsnI	GGCC	1 cut(s)	359
Bso31I	GGTCTC	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	388
BspANI	GGCC	1 cut(s)	359
BspCNI	CTCAG	2 cut(s)	183, 450
BspLI	GGNNCC	3 cut(s)	248, 249, 385
BspT107I	GGYRCC	1 cut(s)	383
BspTNI	GGTCTC	1 cut(s)	173
BsrBI	CCGCTC	2 cut(s)	72, 192
BssECI	CCNNGG	1 cut(s)	243
BssNI	GRCGYC	3 cut(s)	218, 320, 369
Bst2UI	CCWGG	1 cut(s)	244
BstACI	GRCGYC	3 cut(s)	218, 320, 369
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstC8I	GCNNGC	3 cut(s)	255, 352, 474
BstDEI	CTNAG	2 cut(s)	170, 458
BstF5I	GGATG	1 cut(s)	156
BstMAI	GTCTC	1 cut(s)	173
BstMWI	GCNNNNNNNGC	3 cut(s)	78, 356, 383
BstNI	CCWGG	1 cut(s)	244
BstSCI	CCNGG	2 cut(s)	242, 446
BstSLI	GKGCMC	1 cut(s)	388
BstV1I	GCAGC	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	359
BtsCI	GGATG	1 cut(s)	156
Cac8I	GCNNGC	3 cut(s)	255, 352, 474
Cfr13I	GGNCC	2 cut(s)	247, 424
CseI	GACGC	3 cut(s)	207, 328, 377
CviAII	CATG	2 cut(s)	347, 501
DdeI	CTNAG	2 cut(s)	170, 458
DraI	TTTAAA	1 cut(s)	292
EciI	GGCGGA	2 cut(s)	74, 96
Eco31I	GGTCTC	1 cut(s)	173
Eco47I	GGWCC	2 cut(s)	247, 424
EcoO109I	RGGNCCY	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	242
EcoT22I	ATGCAT	1 cut(s)	486
FaeI	CATG	2 cut(s)	350, 504
FaiI	YATR	4 cut(s)	348, 429, 455, 502
FaqI	GGGAC	2 cut(s)	166, 233
FatI	CATG	2 cut(s)	346, 500
FauI	CCCGC	2 cut(s)	197, 258
Fnu4HI	GCNGC	5 cut(s)	9, 70, 175, 372, 375
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	5 cut(s)	9, 70, 175, 372, 375
GluI	GCNGC	5 cut(s)	9, 70, 175, 372, 375
GsaI	CCCAGC	1 cut(s)	391
HaeIII	GGCC	1 cut(s)	359
HapII	CCGG	2 cut(s)	323, 448
HgaI	GACGC	3 cut(s)	207, 328, 377
Hin1I	GRCGYC	3 cut(s)	218, 320, 369
Hin1II	CATG	2 cut(s)	350, 504
HinfI	GANTC	1 cut(s)	37
HpaII	CCGG	2 cut(s)	323, 448
HphI	GGTGA	3 cut(s)	139, 274, 490
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	1 cut(s)	510
Hpy188III	TCNNGA	1 cut(s)	409
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	2 cut(s)	211, 223
HpyAV	CCTTC	2 cut(s)	269, 500
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	3 cut(s)	197, 472, 484
HpyF10VI	GCNNNNNNNGC	3 cut(s)	78, 356, 383
HpyF3I	CTNAG	2 cut(s)	170, 458
HpySE526I	ACGT	1 cut(s)	522
Hsp92I	GRCGYC	3 cut(s)	218, 320, 369
Hsp92II	CATG	2 cut(s)	350, 504
KflI	GGGWCCC	1 cut(s)	247
LmnI	GCTCC	2 cut(s)	35, 77
Lsp1109I	GCAGC	1 cut(s)	20
LweI	GCATC	4 cut(s)	171, 459, 471, 493
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	2 cut(s)	280, 316
MbiI	CCGCTC	2 cut(s)	72, 192
MboII	GAAGA	2 cut(s)	248, 389
MhlI	GDGCHC	1 cut(s)	388
MluCI	AATT	3 cut(s)	199, 294, 413
Mph1103I	ATGCAT	1 cut(s)	486
MseI	TTAA	1 cut(s)	291
MspI	CCGG	2 cut(s)	323, 448
MspR9I	CCNGG	2 cut(s)	244, 448
MvaI	CCWGG	1 cut(s)	244
MwoI	GCNNNNNNNGC	3 cut(s)	78, 356, 383
NciI	CCSGG	1 cut(s)	448
NlaIII	CATG	2 cut(s)	350, 504
NlaIV	GGNNCC	3 cut(s)	248, 249, 385
NmuCI	GTSAC	2 cut(s)	280, 316
NsiI	ATGCAT	1 cut(s)	486
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	37
PkrI	GCNGC	5 cut(s)	10, 71, 176, 373, 376
PpuMI	RGGWCCY	1 cut(s)	247
Psp1406I	AACGTT	1 cut(s)	522
Psp5II	RGGWCCY	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	242
PspFI	CCCAGC	1 cut(s)	387
PspGI	CCWGG	1 cut(s)	242
PspN4I	GGNNCC	3 cut(s)	248, 249, 385
PspPI	GGNCC	2 cut(s)	247, 424
PspPPI	RGGWCCY	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	5 cut(s)	9, 70, 175, 372, 375
Sau96I	GGNCC	2 cut(s)	247, 424
ScrFI	CCNGG	2 cut(s)	244, 448
SduI	GDGCHC	1 cut(s)	388
SetI	ASST	5 cut(s)	32, 393, 406, 445, 525
SfaNI	GCATC	4 cut(s)	171, 459, 471, 493
SinI	GGWCC	2 cut(s)	247, 424
Sse9I	AATT	3 cut(s)	199, 294, 413
StyD4I	CCNGG	2 cut(s)	242, 446
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	1 cut(s)	363
TaqII	GACCGA	1 cut(s)	155
TasI	AATT	3 cut(s)	199, 294, 413
TauI	GCSGC	4 cut(s)	72, 177, 374, 377
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TseFI	GTSAC	2 cut(s)	280, 316
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	2 cut(s)	280, 316
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	2 cut(s)	247, 424
XapI	RAATTY	2 cut(s)	199, 413
Zsp2I	ATGCAT	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.