Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

4895249 .. 4896335

Gene Structure 1087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGTTGCAGACTAAAATTCACTTGTATATACAGGCGTTGGTTGAGTTCTTGGCGGAAATGAGAGGAAACAAAGTAAAATTTGATCCGAACAAGCTTGTGCTCACGGCGGGTTCAACTCCTGCCAATGAGACTCTTATGTTTTGCCTTGCCGATCCTGGCGAAGCCTTCCTCATCCCCACTCCATACTACCCAGGGTTTGATAGAGATCTTAAGTGGTGTACCGGAGTTGAAATCGTTCCACTACATTGCACAAGTGCAAATGGATTCAAAATCACCGAGTCTGCATTGGAGGAGGCCTACCAACGTGCGCAGAAATTAAAATTAAAAGTTAAAGGAGTATTGTTCACGAATCCTTCGAACCTTTTAGGCACAACAATGACTCGACTTGAGCTCAACCACATCATCGATTTTGCCATTGCAAAAGAAGTACACATAGTTAGCGACGAAATATACTCAGGAACCACTTTCAACTACCCAAGTTTTGTAAGCATCGTAGATGCTCTATCCAAAAGAAACCTAGAAGACGCCGAAATATGGAATCGATCTCACATTGTATACAGCCTCTCTAAGGATTTTGGTTTGCCAGGTTTCCGAGTAGGTATGCTTTACTCCAACAATTTAACAGTTGTGTCCGCAGCTACAAAGATGTCAAGCTTTGGACTTATCTCCTCACAAACTCAATACATGCTTTGTGAGATGCTGAAAGACAAGAAATTCAGAACCAATTACATGGAGGAGAATCAAAAGCGTCTTAAAAAGAGGAAGGAGATGCGTGTGTGTGGGCTCAGAGGGGCAGGGCTTAGGTGTTTGGAAAGCAATGCTGGGTTATTTTGCTGGGTGGACAAGAGGCACCTTTTGAGGTCCAACACTTTTGAAGCTGAAAACGAGCTTCTTCGTGTCATTGTTCTGAACCCGGTTGGTTTAGGGTGTGCTTTGCAAACATGTCTGAAGCAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009987 GO:0016053 GO:0016829 GO:0016846 GO:0016847 GO:0018871 GO:0019752 GO:0032787 GO:0042218 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

320

Amino Acids

36.05

Weight (kDa)

8.86

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	10 - 300	9.7e-70	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	309
AccB1I	GGYRCC	1 cut(s)	849
AccI	GTMKAC	1 cut(s)	555
AciI	CCGC	3 cut(s)	53, 107, 633
AclWI	GGATC	2 cut(s)	77, 146
AcsI	RAATTY	3 cut(s)	15, 77, 713
AcyI	GRCGYC	1 cut(s)	525
AfaI	GTAC	2 cut(s)	220, 429
AfiI	CCNNNNNNNGG	2 cut(s)	534, 568
AflII	CTTAAG	1 cut(s)	209
AflIII	ACRYGT	1 cut(s)	941
AgsI	TTSAA	5 cut(s)	114, 230, 268, 469, 875
AjnI	CCWGG	3 cut(s)	154, 190, 583
AluBI	AGCT	6 cut(s)	94, 391, 638, 654, 878, 889
AluI	AGCT	6 cut(s)	94, 391, 638, 654, 878, 889
Alw21I	GWGCWC	2 cut(s)	102, 393
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	2 cut(s)	77, 146
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	1 cut(s)	635
ApoI	RAATTY	3 cut(s)	15, 77, 713
Asp700I	GAANNNNTTC	1 cut(s)	234
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	861
AsuC2I	CCSGG	1 cut(s)	914
AsuHPI	GGTGA	1 cut(s)	265
AsuII	TTCGAA	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	861
BanI	GGYRCC	1 cut(s)	849
BanII	GRGCYC	2 cut(s)	393, 786
BbsI	GAAGAC	1 cut(s)	528
Bbv12I	GWGCWC	2 cut(s)	102, 393
BbvI	GCAGC	1 cut(s)	647
BceAI	ACGGC	1 cut(s)	120
BciT130I	CCWGG	3 cut(s)	156, 192, 585
BcnI	CCSGG	1 cut(s)	914
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	518
BfrI	CTTAAG	1 cut(s)	209
BglII	AGATCT	1 cut(s)	205
BisI	GCNGC	1 cut(s)	636
BlsI	GCNGC	1 cut(s)	637
Bme1390I	CCNGG	4 cut(s)	156, 192, 585, 914
Bme18I	GGWCC	1 cut(s)	861
BmgT120I	GGNCC	1 cut(s)	861
BmiI	GGNNCC	2 cut(s)	460, 851
BmrFI	CCNGG	4 cut(s)	156, 192, 585, 914
BmsI	GCATC	4 cut(s)	487, 498, 687, 759
BpiI	GAAGAC	1 cut(s)	528
Bpu10I	CCTNAGC	1 cut(s)	800
Bpu14I	TTCGAA	1 cut(s)	356
BpuEI	CTTGAG	1 cut(s)	407
BpuMI	CCSGG	1 cut(s)	914
Bsa29I	ATCGAT	2 cut(s)	405, 541
BsaBI	GATNNNNATC	1 cut(s)	204
BsaHI	GRCGYC	1 cut(s)	525
BsaJI	CCNNGG	2 cut(s)	190, 191
BsaWI	WCCGGW	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	2 cut(s)	534, 568
Bse3DI	GCAATG	3 cut(s)	244, 414, 823
Bse8I	GATNNNNATC	1 cut(s)	204
BseBI	CCWGG	3 cut(s)	156, 192, 585
BseCI	ATCGAT	2 cut(s)	405, 541
BseDI	CCNNGG	2 cut(s)	190, 191
BseGI	GGATG	1 cut(s)	171
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	534, 568
BseMI	GCAATG	3 cut(s)	244, 414, 823
BseMII	CTCAG	2 cut(s)	468, 799
BseRI	GAGGAG	3 cut(s)	305, 658, 749
BseXI	GCAGC	1 cut(s)	647
BseYI	CCCAGC	2 cut(s)	821, 834
BshFI	GGCC	1 cut(s)	296
BshNI	GGYRCC	1 cut(s)	849
BshVI	ATCGAT	2 cut(s)	405, 541
BsiHKAI	GWGCWC	2 cut(s)	102, 393
BsiSI	CCGG	2 cut(s)	222, 914
BslI	CCNNNNNNNGG	2 cut(s)	534, 568
BsmAI	GTCTC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	296
Bsp119I	TTCGAA	1 cut(s)	356
Bsp1286I	GDGCHC	3 cut(s)	102, 393, 786
Bsp143I	GATC	4 cut(s)	82, 151, 205, 542
BspACI	CCGC	3 cut(s)	53, 107, 633
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	2 cut(s)	467, 798
BspDI	ATCGAT	2 cut(s)	405, 541
BspLI	GGNNCC	2 cut(s)	460, 851
BspPI	GGATC	2 cut(s)	77, 146
BspT104I	TTCGAA	1 cut(s)	356
BspT107I	GGYRCC	1 cut(s)	849
BspTI	CTTAAG	1 cut(s)	209
BsrDI	GCAATG	3 cut(s)	244, 414, 823
BssECI	CCNNGG	2 cut(s)	190, 191
BssMI	GATC	4 cut(s)	82, 151, 205, 542
BssNAI	GTATAC	1 cut(s)	556
BssNI	GRCGYC	1 cut(s)	525
Bst1107I	GTATAC	1 cut(s)	556
Bst2UI	CCWGG	3 cut(s)	156, 192, 585
Bst4CI	ACNGT	1 cut(s)	625
BstACI	GRCGYC	1 cut(s)	525
BstAFI	CTTAAG	1 cut(s)	209
BstBI	TTCGAA	1 cut(s)	356
BstDEI	CTNAG	4 cut(s)	454, 567, 785, 800
BstENI	CCTNNNNNAGG	1 cut(s)	566
BstF5I	GGATG	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	4 cut(s)	85, 154, 208, 545
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	4 cut(s)	82, 151, 205, 542
BstNI	CCWGG	3 cut(s)	156, 192, 585
BstNSI	RCATGY	2 cut(s)	688, 945
BstSCI	CCNGG	4 cut(s)	154, 190, 583, 912
BstV1I	GCAGC	1 cut(s)	647
BstV2I	GAAGAC	1 cut(s)	528
BstX2I	RGATCY	1 cut(s)	205
BstXI	CCANNNNNNTGG	1 cut(s)	730
BstYI	RGATCY	1 cut(s)	205
BstZ17I	GTATAC	1 cut(s)	556
Bsu15I	ATCGAT	2 cut(s)	405, 541
BsuRI	GGCC	1 cut(s)	296
BsuTUI	ATCGAT	2 cut(s)	405, 541
BtsCI	GGATG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	955
CfoI	GCGC	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	861
ClaI	ATCGAT	2 cut(s)	405, 541
CseI	GACGC	2 cut(s)	533, 737
Csp6I	GTAC	2 cut(s)	219, 428
CviAII	CATG	3 cut(s)	685, 730, 942
CviQI	GTAC	2 cut(s)	219, 428
DdeI	CTNAG	4 cut(s)	454, 567, 785, 800
DpnI	GATC	4 cut(s)	84, 153, 207, 544
DpnII	GATC	4 cut(s)	82, 151, 205, 542
EciI	GGCGGA	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	391
Eco147I	AGGCCT	1 cut(s)	296
Eco24I	GRGCYC	2 cut(s)	393, 786
Eco47I	GGWCC	1 cut(s)	861
Eco53kI	GAGCTC	1 cut(s)	391
EcoICRI	GAGCTC	1 cut(s)	391
EcoNI	CCTNNNNNAGG	1 cut(s)	566
EcoRII	CCWGG	3 cut(s)	154, 190, 583
EcoT38I	GRGCYC	2 cut(s)	393, 786
FaeI	CATG	3 cut(s)	688, 733, 945
FatI	CATG	3 cut(s)	684, 729, 941
FauI	CCCGC	1 cut(s)	100
FblI	GTMKAC	1 cut(s)	555
Fnu4HI	GCNGC	1 cut(s)	636
FokI	GGATG	1 cut(s)	158
FriOI	GRGCYC	2 cut(s)	393, 786
Fsp4HI	GCNGC	1 cut(s)	636
FspBI	CTAG	1 cut(s)	518
FspI	TGCGCA	1 cut(s)	309
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	1 cut(s)	636
GsaI	CCCAGC	2 cut(s)	825, 838
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	2 cut(s)	222, 914
HgaI	GACGC	2 cut(s)	533, 737
HhaI	GCGC	1 cut(s)	310
Hin1I	GRCGYC	1 cut(s)	525
Hin1II	CATG	3 cut(s)	688, 733, 945
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HindIII	AAGCTT	2 cut(s)	92, 652
HinfI	GANTC	7 cut(s)	130, 264, 278, 349, 379, 538, 739
HpaII	CCGG	2 cut(s)	222, 914
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	5 cut(s)	219, 345, 430, 556, 841
Hpy188I	TCNGA	6 cut(s)	87, 593, 719, 788, 909, 948
Hpy188III	TCNNGA	2 cut(s)	346, 456
Hpy8I	GTNNAC	5 cut(s)	219, 345, 430, 556, 841
Hpy99I	CGWCG	1 cut(s)	446
HpyAV	CCTTC	3 cut(s)	175, 363, 757
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4IV	ACGT	1 cut(s)	304
HpyCH4V	TGCA	6 cut(s)	7, 249, 257, 284, 419, 937
HpyF3I	CTNAG	4 cut(s)	454, 567, 785, 800
HpySE526I	ACGT	1 cut(s)	304
Hsp92I	GRCGYC	1 cut(s)	525
Hsp92II	CATG	3 cut(s)	688, 733, 945
HspAI	GCGC	1 cut(s)	308
Kzo9I	GATC	4 cut(s)	82, 151, 205, 542
Lsp1109I	GCAGC	1 cut(s)	647
LweI	GCATC	4 cut(s)	487, 498, 687, 759
MaeI	CTAG	1 cut(s)	518
MaeII	ACGT	1 cut(s)	304
MalI	GATC	4 cut(s)	84, 153, 207, 544
MboI	GATC	4 cut(s)	82, 151, 205, 542
MboII	GAAGA	2 cut(s)	533, 884
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	3 cut(s)	102, 393, 786
MluCI	AATT	7 cut(s)	15, 77, 314, 320, 616, 713, 724
MlyI	GAGTC	3 cut(s)	124, 287, 373
MmeI	TCCRAC	2 cut(s)	636, 888
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	6 cut(s)	210, 317, 323, 330, 620, 753
MslI	CAYNNNNRTG	1 cut(s)	374
MspCI	CTTAAG	1 cut(s)	209
MspI	CCGG	2 cut(s)	222, 914
MspR9I	CCNGG	4 cut(s)	156, 192, 585, 914
MvaI	CCWGG	3 cut(s)	156, 192, 585
NciI	CCSGG	1 cut(s)	914
NdeII	GATC	4 cut(s)	82, 151, 205, 542
NlaIII	CATG	3 cut(s)	688, 733, 945
NlaIV	GGNNCC	2 cut(s)	460, 851
NsbI	TGCGCA	1 cut(s)	309
NspI	RCATGY	2 cut(s)	688, 945
NspV	TTCGAA	1 cut(s)	356
PasI	CCCWGGG	1 cut(s)	191
PceI	AGGCCT	1 cut(s)	296
PciI	ACATGT	1 cut(s)	941
PcsI	WCGNNNNNNNCGW	1 cut(s)	353
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	4 cut(s)	264, 349, 538, 739
PkrI	GCNGC	1 cut(s)	637
PleI	GAGTC	3 cut(s)	124, 286, 373
PpsI	GAGTC	3 cut(s)	124, 286, 373
PscI	ACATGT	1 cut(s)	941
Psp124BI	GAGCTC	1 cut(s)	393
Psp6I	CCWGG	3 cut(s)	154, 190, 583
PspFI	CCCAGC	2 cut(s)	821, 834
PspGI	CCWGG	3 cut(s)	154, 190, 583
PspN4I	GGNNCC	2 cut(s)	460, 851
PspPI	GGNCC	1 cut(s)	861
PsuI	RGATCY	1 cut(s)	205
RsaI	GTAC	2 cut(s)	220, 429
RsaNI	GTAC	2 cut(s)	219, 428
RseI	CAYNNNNRTG	1 cut(s)	374
SacI	GAGCTC	1 cut(s)	393
SaqAI	TTAA	6 cut(s)	210, 317, 323, 330, 620, 753
SatI	GCNGC	1 cut(s)	636
Sau3AI	GATC	4 cut(s)	82, 151, 205, 542
Sau96I	GGNCC	1 cut(s)	861
SchI	GAGTC	3 cut(s)	124, 287, 373
ScrFI	CCNGG	4 cut(s)	156, 192, 585, 914
SduI	GDGCHC	3 cut(s)	102, 393, 786
SfaNI	GCATC	4 cut(s)	487, 498, 687, 759
SfuI	TTCGAA	1 cut(s)	356
SinI	GGWCC	1 cut(s)	861
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	2 cut(s)	209, 386
SmoI	CTYRAG	2 cut(s)	209, 386
Sse9I	AATT	7 cut(s)	15, 77, 314, 320, 616, 713, 724
SseBI	AGGCCT	1 cut(s)	296
SsiI	CCGC	3 cut(s)	53, 107, 633
SspMI	CTAG	1 cut(s)	518
SstI	GAGCTC	1 cut(s)	393
StuI	AGGCCT	1 cut(s)	296
StyD4I	CCNGG	4 cut(s)	154, 190, 583, 912
TaaI	ACNGT	1 cut(s)	625
TaiI	ACGT	1 cut(s)	307
TaqI	TCGA	4 cut(s)	356, 382, 405, 541
TasI	AATT	7 cut(s)	15, 77, 314, 320, 616, 713, 724
TatI	WGTACW	1 cut(s)	427
TfiI	GAWTC	4 cut(s)	264, 349, 538, 739
Tru1I	TTAA	6 cut(s)	210, 317, 323, 330, 620, 753
Tru9I	TTAA	6 cut(s)	210, 317, 323, 330, 620, 753
TseI	GCWGC	1 cut(s)	635
Vha464I	CTTAAG	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	861
XagI	CCTNNNNNAGG	1 cut(s)	566
XapI	RAATTY	3 cut(s)	15, 77, 713
XceI	RCATGY	2 cut(s)	688, 945
XmiI	GTMKAC	1 cut(s)	555
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.