pycom08g06380

xyloglucan glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Forward (+)
4950070 .. 4951309
1240 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 816 bp
ATGAATTGTAGCTATGTCAAGGACTATGAATTCGTCGCGATTTTCGACGCAGATTTTCAGCCCACCCCTGATTTCCTCAAGAGAACGGTCCCTCACTTCAAGGGCAATGAGGAACTAGGGCTGGTTCAGGCTAGGTGGTCCTTTGTGAACAAGGATGAGAACCTGCTCACAAGGCTGCAGAACATTAACTTGTCATTCCACTTTGAGGTTGAGCAACAAGTGAACAGCGTGTTCATTAATTTCTTCGGTTTCAATGGGACAGCTGGTGTGTGGAGGATAAAGGCGTTGGAAGAAGCCGGTGGGTGGTTAGAGAGGACCACTGTCGAGGACATGGATATTGCTGTTCGTGCCCATCTCCACGGATGGAAATTCATTTTCCTCAATGACGTCGAGCTTATCGGAAGCAACAACACCGATGGCACTCAGGGCCTATGCAATTGTTTCGCCTCTGTTTGCCCGCTATTATCAAATCAAAGCATTGGCAAGAAATTCAATTTAATCTTTCTCTTCTTTCTGCTTCGGAAACTTATATTACCCTTCTATTCGTTTACCCTTTTTTGCATAATTCTCCCCATGACAATGTTCATCCCAGAGGCCGAGCTACCAGCGTGGGTTGTATGTTACATCCCCGCCACCATGTCGTTTCTCAACATTCTCCCAGCCCCAAAAGCCTTCCCTTTCATTGTTCCTTACCTTCTCTTTGAGAACACCATGTCAGTGACGAAGTTCAATGCTATGATCTCCGGCCTGTTCCAGCTTGGCAGCGCATACGAGTGGGTTGTCACTAAGAAATCTGGCCGTTCCTCAGAGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_tranf_2_3 Glyco_trans_2_3

Protein Analysis

272

Amino Acids

30.89

Weight (kDa)

5.62

Isoelectric Point (pI)

36.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_tranf_2_3 PF13641 9 - 131 4.4e-06 Glycosyltransferase like family 2
Glyco_trans_2_3 PF13632 12 - 206 6.4e-11 Glycosyl transferase family group 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 390
Acc36I ACCTGC 1 cut(s) 171
AccII CGCG 1 cut(s) 38
AciI CCGC 2 cut(s) 458, 630
AcoI YGGCCR 1 cut(s) 796
AcsI RAATTY 3 cut(s) 29, 368, 488
AcyI GRCGYC 1 cut(s) 387
AfiI CCNNNNNNNGG 2 cut(s) 205, 303
AgsI TTSAA 4 cut(s) 100, 253, 493, 730
AluBI AGCT 5 cut(s) 12, 263, 394, 601, 757
AluI AGCT 5 cut(s) 12, 263, 394, 601, 757
AoxI GGCC 4 cut(s) 427, 594, 745, 796
ApeKI GCWGC 2 cut(s) 175, 762
ApoI RAATTY 3 cut(s) 29, 368, 488
ArsI GACNNNNNNTTYG 2 cut(s) 14, 46
AseI ATTAAT 1 cut(s) 237
AspLEI GCGC 1 cut(s) 767
AspS9I GGNCC 4 cut(s) 88, 138, 315, 427
AvaII GGWCC 3 cut(s) 88, 138, 315
BaeGI GKGCMC 1 cut(s) 352
BbvI GCAGC 2 cut(s) 162, 774
BccI CCATC 3 cut(s) 357, 360, 410
BceAI ACGGC 1 cut(s) 783
BcgI CGANNNNNNTGC 2 cut(s) 424, 458
BfaI CTAG 2 cut(s) 116, 132
BfmI CTRYAG 1 cut(s) 176
BfuAI ACCTGC 1 cut(s) 171
BisI GCNGC 2 cut(s) 176, 763
BlsI GCNGC 2 cut(s) 177, 764
Bme18I GGWCC 3 cut(s) 88, 138, 315
BmgT120I GGNCC 4 cut(s) 88, 138, 315, 427
BmiI GGNNCC 1 cut(s) 90
BoxI GACNNNNGTC 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 62
BsaHI GRCGYC 1 cut(s) 387
BsaJI CCNNGG 1 cut(s) 358
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 303
Bse118I RCCGGY 1 cut(s) 296
Bse3DI GCAATG 1 cut(s) 112
BseDI CCNNGG 1 cut(s) 358
BseGI GGATG 4 cut(s) 160, 368, 585, 624
BseLI CCNNNNNNNGG 2 cut(s) 205, 303
BseMI GCAATG 1 cut(s) 112
BseMII CTCAG 1 cut(s) 437
BseSI GKGCMC 1 cut(s) 352
BseXI GCAGC 2 cut(s) 162, 774
BseYI CCCAGC 1 cut(s) 658
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 4 cut(s) 429, 596, 747, 798
BsiSI CCGG 2 cut(s) 297, 744
BslFI GGGAC 2 cut(s) 74, 271
BslI CCNNNNNNNGG 2 cut(s) 205, 303
BsmFI GGGAC 2 cut(s) 74, 271
BsnI GGCC 4 cut(s) 429, 596, 747, 798
Bsp1286I GDGCHC 1 cut(s) 352
Bsp143I GATC 1 cut(s) 738
Bsp68I TCGCGA 1 cut(s) 38
BspACI CCGC 2 cut(s) 458, 630
BspANI GGCC 4 cut(s) 429, 596, 747, 798
BspCNI CTCAG 1 cut(s) 436
BspFNI CGCG 1 cut(s) 38
BspLI GGNNCC 1 cut(s) 90
BspMAI CTGCAG 1 cut(s) 180
BspMI ACCTGC 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 112
BsrFI RCCGGY 1 cut(s) 296
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 1 cut(s) 738
BssNI GRCGYC 1 cut(s) 387
Bst4CI ACNGT 2 cut(s) 88, 322
Bst6I CTCTTC 1 cut(s) 512
BstACI GRCGYC 1 cut(s) 387
BstC8I GCNNGC 1 cut(s) 458
BstDEI CTNAG 3 cut(s) 423, 786, 805
BstDSI CCRYGG 1 cut(s) 358
BstF5I GGATG 4 cut(s) 160, 368, 585, 624
BstFNI CGCG 1 cut(s) 38
BstHHI GCGC 1 cut(s) 767
BstKTI GATC 1 cut(s) 741
BstMBI GATC 1 cut(s) 738
BstMWI GCNNNNNNNGC 4 cut(s) 172, 347, 426, 668
BstPAI GACNNNNGTC 1 cut(s) 320
BstSFI CTRYAG 1 cut(s) 176
BstSLI GKGCMC 1 cut(s) 352
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 2 cut(s) 162, 774
BsuRI GGCC 4 cut(s) 429, 596, 747, 798
BtgI CCRYGG 1 cut(s) 358
BtsCI GGATG 4 cut(s) 160, 368, 585, 624
BtsIMutI CAGTG 2 cut(s) 318, 723
BtuMI TCGCGA 1 cut(s) 38
BveI ACCTGC 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 458
CfoI GCGC 1 cut(s) 767
Cfr10I RCCGGY 1 cut(s) 296
Cfr13I GGNCC 4 cut(s) 88, 138, 315, 427
CseI GACGC 1 cut(s) 56
CviAII CATG 4 cut(s) 331, 574, 637, 712
DdeI CTNAG 3 cut(s) 423, 786, 805
DpnI GATC 1 cut(s) 740
DpnII GATC 1 cut(s) 738
EaeI YGGCCR 1 cut(s) 796
Eam1104I CTCTTC 1 cut(s) 512
EarI CTCTTC 1 cut(s) 512
Eco47I GGWCC 3 cut(s) 88, 138, 315
EcoO109I RGGNCCY 1 cut(s) 427
EcoRI GAATTC 1 cut(s) 29
FaeI CATG 4 cut(s) 334, 577, 640, 715
FaqI GGGAC 2 cut(s) 74, 271
FatI CATG 4 cut(s) 330, 573, 636, 711
FauI CCCGC 2 cut(s) 465, 637
Fnu4HI GCNGC 2 cut(s) 176, 763
FokI GGATG 4 cut(s) 167, 375, 572, 611
Fsp4HI GCNGC 2 cut(s) 176, 763
FspBI CTAG 2 cut(s) 116, 132
GlaI GCGC 1 cut(s) 766
GluI GCNGC 2 cut(s) 176, 763
GsaI CCCAGC 1 cut(s) 662
HaeIII GGCC 4 cut(s) 429, 596, 747, 798
HapII CCGG 2 cut(s) 297, 744
HgaI GACGC 1 cut(s) 56
HhaI GCGC 1 cut(s) 767
Hin1I GRCGYC 1 cut(s) 387
Hin1II CATG 4 cut(s) 334, 577, 640, 715
Hin6I GCGC 1 cut(s) 765
HinP1I GCGC 1 cut(s) 765
HpaII CCGG 2 cut(s) 297, 744
Hpy166II GTNNAC 3 cut(s) 148, 223, 549
Hpy188I TCNGA 3 cut(s) 401, 522, 808
Hpy188III TCNNGA 2 cut(s) 37, 79
Hpy8I GTNNAC 3 cut(s) 148, 223, 549
Hpy99I CGWCG 3 cut(s) 38, 50, 392
HpyAV CCTTC 3 cut(s) 547, 682, 704
HpyCH4III ACNGT 2 cut(s) 88, 322
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 3 cut(s) 178, 435, 561
HpyF10VI GCNNNNNNNGC 4 cut(s) 172, 347, 426, 668
HpyF3I CTNAG 3 cut(s) 423, 786, 805
HpySE526I ACGT 1 cut(s) 387
Hsp92I GRCGYC 1 cut(s) 387
Hsp92II CATG 4 cut(s) 334, 577, 640, 715
HspAI GCGC 1 cut(s) 765
Kzo9I GATC 1 cut(s) 738
Lsp1109I GCAGC 2 cut(s) 162, 774
MaeI CTAG 2 cut(s) 116, 132
MaeII ACGT 1 cut(s) 387
MaeIII GTNAC 3 cut(s) 620, 718, 781
MalI GATC 1 cut(s) 740
MboI GATC 1 cut(s) 738
MboII GAAGA 3 cut(s) 235, 302, 499
MfeI CAATTG 1 cut(s) 436
MhlI GDGCHC 1 cut(s) 352
MluCI AATT 8 cut(s) 4, 29, 238, 368, 436, 488, 493, 564
MmeI TCCRAC 1 cut(s) 267
MseI TTAA 3 cut(s) 186, 237, 497
MslI CAYNNNNRTG 3 cut(s) 578, 716, 772
MspA1I CMGCKG 1 cut(s) 263
MspI CCGG 2 cut(s) 297, 744
MunI CAATTG 1 cut(s) 436
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 4 cut(s) 172, 347, 426, 668
NdeII GATC 1 cut(s) 738
NlaIII CATG 4 cut(s) 334, 577, 640, 715
NlaIV GGNNCC 1 cut(s) 90
NmeAIII GCCGAG 1 cut(s) 622
NmuCI GTSAC 2 cut(s) 718, 781
NruI TCGCGA 1 cut(s) 38
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PkrI GCNGC 2 cut(s) 177, 764
PshAI GACNNNNGTC 1 cut(s) 320
PshBI ATTAAT 1 cut(s) 237
PspFI CCCAGC 1 cut(s) 658
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 4 cut(s) 88, 138, 315, 427
PstI CTGCAG 1 cut(s) 180
PvuII CAGCTG 1 cut(s) 263
RruI TCGCGA 1 cut(s) 38
RseI CAYNNNNRTG 3 cut(s) 578, 716, 772
SaqAI TTAA 3 cut(s) 186, 237, 497
SatI GCNGC 2 cut(s) 176, 763
Sau3AI GATC 1 cut(s) 738
Sau96I GGNCC 4 cut(s) 88, 138, 315, 427
SduI GDGCHC 1 cut(s) 352
SfcI CTRYAG 1 cut(s) 176
SinI GGWCC 3 cut(s) 88, 138, 315
SmiMI CAYNNNNRTG 3 cut(s) 578, 716, 772
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 8 cut(s) 4, 29, 238, 368, 436, 488, 493, 564
SsiI CCGC 2 cut(s) 458, 630
SspMI CTAG 2 cut(s) 116, 132
TaaI ACNGT 2 cut(s) 88, 322
TaiI ACGT 1 cut(s) 390
TaqI TCGA 3 cut(s) 45, 324, 390
TasI AATT 8 cut(s) 4, 29, 238, 368, 436, 488, 493, 564
Tru1I TTAA 3 cut(s) 186, 237, 497
Tru9I TTAA 3 cut(s) 186, 237, 497
TscAI CASTG 2 cut(s) 325, 723
TseFI GTSAC 2 cut(s) 718, 781
TseI GCWGC 2 cut(s) 175, 762
Tsp45I GTSAC 2 cut(s) 718, 781
TspDTI ATGAA 6 cut(s) 17, 42, 223, 361, 574, 670
TspGWI ACGGA 1 cut(s) 375
TspRI CASTG 2 cut(s) 325, 723
VpaK11BI GGWCC 3 cut(s) 88, 138, 315
VspI ATTAAT 1 cut(s) 237
XapI RAATTY 3 cut(s) 29, 368, 488
XspI CTAG 2 cut(s) 116, 132
ZraI GACGTC 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.