Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

5328336 .. 5328933

Gene Structure 598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTGGAGGGCAATCGGTAACAGAGAAGCGGGCAAGCTCCGCCCAAATTCGTTCTCGAATCGAATCAAGTCAACCCGGATCCAAACGCTTGAACTCTCCAATCACAAAGACATCATGTCCCCTCACCGCGGCTCTGTCAACTCTCTCCAGCTCGATTTGACGGAGGGCCGGTACCTGCTATCTGGCACCTCCGATGCTTCCGCCGCCGTGTTCGATGTCCAGCACGGGACCAATTACGGAGGCGGCGAAGCTATCACGAGGCACAAGTGCTTGTTCGCGGTGGATAAGCAGCACGAGCACGACCATAAGTATGTGGTGTCCTCCGCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0005488 GO:0005575 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006283 GO:0006289 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009893 GO:0009987 GO:0010604 GO:0016567 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044877 GO:0045739 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051716 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:1901360 GO:1901564 GO:2001020 GO:2001022

KEGG Pathways

Metabolic & Signaling

ko03420 ko04120 map03420 map04120

Pfam Domains

Protein Families

WD40

Protein Analysis

111

Amino Acids

12.23

Weight (kDa)

9.25

Isoelectric Point (pI)

30.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	183
Acc65I	GGTACC	1 cut(s)	171
AccB1I	GGYRCC	2 cut(s)	171, 185
AccII	CGCG	2 cut(s)	129, 278
AciI	CCGC	9 cut(s)	29, 40, 127, 129, 201, 204, 243, 278, 324
AclWI	GGATC	2 cut(s)	73, 86
AcsI	RAATTY	1 cut(s)	46
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	92
AhdI	GACNNNNNGTC	1 cut(s)	115
AluBI	AGCT	3 cut(s)	37, 151, 251
AluI	AGCT	3 cut(s)	37, 151, 251
Alw21I	GWGCWC	1 cut(s)	300
AlwI	GGATC	2 cut(s)	73, 86
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	1 cut(s)	289
ApoI	RAATTY	1 cut(s)	46
Asp718I	GGTACC	1 cut(s)	171
AspS9I	GGNCC	2 cut(s)	166, 228
AsuC2I	CCSGG	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	228
BamHI	GGATCC	1 cut(s)	78
BanI	GGYRCC	2 cut(s)	171, 185
BauI	CACGAG	2 cut(s)	256, 293
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	301
BceAI	ACGGC	1 cut(s)	191
BcnI	CCSGG	1 cut(s)	76
BfuAI	ACCTGC	1 cut(s)	183
BisI	GCNGC	4 cut(s)	130, 204, 244, 290
BlsI	GCNGC	4 cut(s)	131, 205, 245, 291
Bme1390I	CCNGG	1 cut(s)	76
Bme18I	GGWCC	1 cut(s)	228
BmeRI	GACNNNNNGTC	1 cut(s)	115
BmgT120I	GGNCC	2 cut(s)	166, 228
BmiI	GGNNCC	4 cut(s)	80, 173, 187, 229
BmrFI	CCNGG	1 cut(s)	76
BmsI	GCATC	1 cut(s)	184
BpmI	CTGGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	127
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse118I	RCCGGY	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	301
Bsh1236I	CGCG	2 cut(s)	129, 278
BshFI	GGCC	1 cut(s)	168
BshNI	GGYRCC	2 cut(s)	171, 185
BsiHKAI	GWGCWC	1 cut(s)	300
BsiSI	CCGG	2 cut(s)	76, 169
BslFI	GGGAC	2 cut(s)	103, 241
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmFI	GGGAC	2 cut(s)	103, 241
BsnI	GGCC	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	1 cut(s)	78
BspACI	CCGC	9 cut(s)	29, 40, 127, 129, 201, 204, 243, 278, 324
BspANI	GGCC	1 cut(s)	168
BspFNI	CGCG	2 cut(s)	129, 278
BspLI	GGNNCC	4 cut(s)	80, 173, 187, 229
BspMI	ACCTGC	1 cut(s)	183
BspPI	GGATC	2 cut(s)	73, 86
BspT107I	GGYRCC	2 cut(s)	171, 185
BsrFI	RCCGGY	1 cut(s)	168
BssAI	RCCGGY	1 cut(s)	168
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	1 cut(s)	78
BssSI	CACGAG	2 cut(s)	256, 293
Bst2BI	CACGAG	2 cut(s)	256, 293
BstC8I	GCNNGC	2 cut(s)	31, 35
BstDSI	CCRYGG	1 cut(s)	127
BstFNI	CGCG	2 cut(s)	129, 278
BstKTI	GATC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	78
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 203, 295
BstSCI	CCNGG	1 cut(s)	74
BstUI	CGCG	2 cut(s)	129, 278
BstV1I	GCAGC	1 cut(s)	301
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	168
BtgI	CCRYGG	1 cut(s)	127
BveI	ACCTGC	1 cut(s)	183
Cac8I	GCNNGC	2 cut(s)	31, 35
Cfr10I	RCCGGY	1 cut(s)	168
Cfr13I	GGNCC	2 cut(s)	166, 228
Cfr42I	CCGCGG	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	5 cut(s)	37, 132, 151, 168, 251
CviKI_1	RGCY	5 cut(s)	37, 132, 151, 168, 251
CviQI	GTAC	1 cut(s)	172
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
DriI	GACNNNNNGTC	1 cut(s)	115
Eam1105I	GACNNNNNGTC	1 cut(s)	115
EciI	GGCGGA	3 cut(s)	29, 190, 313
Eco47I	GGWCC	1 cut(s)	228
FaeI	CATG	1 cut(s)	118
FaiI	YATR	3 cut(s)	116, 306, 312
FaqI	GGGAC	2 cut(s)	103, 241
FatI	CATG	1 cut(s)	114
FauI	CCCGC	1 cut(s)	22
Fnu4HI	GCNGC	4 cut(s)	130, 204, 244, 290
Fsp4HI	GCNGC	4 cut(s)	130, 204, 244, 290
GluI	GCNGC	4 cut(s)	130, 204, 244, 290
GsuI	CTGGAG	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	2 cut(s)	76, 169
Hin1II	CATG	1 cut(s)	118
HincII	GTYRAC	2 cut(s)	72, 139
HindII	GTYRAC	2 cut(s)	72, 139
HinfI	GANTC	2 cut(s)	58, 63
HpaII	CCGG	2 cut(s)	76, 169
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	2 cut(s)	72, 139
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	2 cut(s)	55, 256
Hpy8I	GTNNAC	2 cut(s)	72, 139
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 203, 295
Hsp92II	CATG	1 cut(s)	118
KpnI	GGTACC	1 cut(s)	175
KspI	CCGCGG	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	78
LmnI	GCTCC	1 cut(s)	42
LpnPI	CCDG	6 cut(s)	89, 161, 168, 182, 188, 233
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	1 cut(s)	184
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MflI	RGATCY	1 cut(s)	78
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	3 cut(s)	46, 232, 328
MnlI	CCTC	6 cut(s)	132, 157, 199, 233, 252, 331
MseI	TTAA	1 cut(s)	331
MslI	CAYNNNNRTG	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	129
MspI	CCGG	2 cut(s)	76, 169
MspR9I	CCNGG	1 cut(s)	76
MvnI	CGCG	2 cut(s)	129, 278
MwoI	GCNNNNNNNGC	3 cut(s)	39, 203, 295
NciI	CCSGG	1 cut(s)	76
NdeII	GATC	1 cut(s)	78
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	4 cut(s)	80, 173, 187, 229
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	58, 63
PkrI	GCNGC	4 cut(s)	131, 205, 245, 291
PspN4I	GGNNCC	4 cut(s)	80, 173, 187, 229
PspPI	GGNCC	2 cut(s)	166, 228
PsuI	RGATCY	1 cut(s)	78
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
RseI	CAYNNNNRTG	1 cut(s)	309
SacII	CCGCGG	1 cut(s)	130
SaqAI	TTAA	1 cut(s)	331
SatI	GCNGC	4 cut(s)	130, 204, 244, 290
Sau3AI	GATC	1 cut(s)	78
Sau96I	GGNCC	2 cut(s)	166, 228
ScrFI	CCNGG	1 cut(s)	76
SduI	GDGCHC	1 cut(s)	300
SetI	ASST	5 cut(s)	39, 153, 177, 191, 253
SfaNI	GCATC	1 cut(s)	184
Sfr303I	CCGCGG	1 cut(s)	130
SgrBI	CCGCGG	1 cut(s)	130
SinI	GGWCC	1 cut(s)	228
SmiMI	CAYNNNNRTG	1 cut(s)	309
Sse9I	AATT	3 cut(s)	46, 232, 328
SsiI	CCGC	9 cut(s)	29, 40, 127, 129, 201, 204, 243, 278, 324
StyD4I	CCNGG	1 cut(s)	74
TaqI	TCGA	4 cut(s)	56, 61, 153, 213
TasI	AATT	3 cut(s)	46, 232, 328
TauI	GCSGC	3 cut(s)	132, 206, 246
TfiI	GAWTC	2 cut(s)	58, 63
Tru1I	TTAA	1 cut(s)	331
Tru9I	TTAA	1 cut(s)	331
TseI	GCWGC	1 cut(s)	289
TspGWI	ACGGA	2 cut(s)	176, 252
VpaK11BI	GGWCC	1 cut(s)	228
XapI	RAATTY	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.