Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

5481693 .. 5482438

Gene Structure 746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGACTTGAAGATGCCGGGGAAGGTGTACCGAACTGCAATGTCGCCGAAGATGTTCAACTTCTCACACCTTGTCTGGCCACCGCGGAGGGTCCTAGGTGCTGTATTTTTCGTGATCGCAGGTGGTGTGATGATTGTGGAATGGTCTACTCCTAGCCAGTGGGTTTTGCTTACAGGTGAATGTGATGCTGCAATACCTCTTTGGGACATTAGGGGTGCCGGATATTTTCTTGTTTTGGATCAATCTCAGTCTCAGCTTGTATGGGAGACGTCCACCCATCCTGGAACGCTCTGCCATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0005488 GO:0005575 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006283 GO:0006289 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009893 GO:0009987 GO:0010604 GO:0016567 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044877 GO:0045739 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051716 GO:0051865 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:1901360 GO:1901564 GO:2001020 GO:2001022

KEGG Pathways

Metabolic & Signaling

ko03420 ko04120 map03420 map04120

Pfam Domains

Protein Families

WD40

Protein Analysis

101

Amino Acids

11.24

Weight (kDa)

6.81

Isoelectric Point (pI)

52.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	110
AatII	GACGTC	1 cut(s)	272
Acc36I	ACCTGC	1 cut(s)	110
AccB1I	GGYRCC	1 cut(s)	215
AccI	GTMKAC	1 cut(s)	146
AccII	CGCG	1 cut(s)	85
AciI	CCGC	2 cut(s)	83, 85
AclWI	GGATC	1 cut(s)	246
AcoI	YGGCCR	1 cut(s)	77
AcyI	GRCGYC	1 cut(s)	269
AfaI	GTAC	1 cut(s)	29
AgsI	TTSAA	2 cut(s)	10, 58
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
Alw26I	GTCTC	2 cut(s)	255, 260
AlwI	GGATC	1 cut(s)	246
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	188
Asp700I	GAANNNNTTC	1 cut(s)	53
AspA2I	CCTAGG	1 cut(s)	94
AspS9I	GGNCC	1 cut(s)	91
AsuC2I	CCSGG	1 cut(s)	18
AsuHPI	GGTGA	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	91
AvrII	CCTAGG	1 cut(s)	94
BalI	TGGCCA	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	1 cut(s)	285
BciT130I	CCWGG	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	18
BcoDI	GTCTC	2 cut(s)	255, 260
BfaI	CTAG	2 cut(s)	95, 153
BfuAI	ACCTGC	1 cut(s)	110
BisI	GCNGC	1 cut(s)	189
BlnI	CCTAGG	1 cut(s)	94
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	2 cut(s)	18, 282
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	2 cut(s)	92, 217
BmrFI	CCNGG	2 cut(s)	18, 282
BmsI	GCATC	2 cut(s)	3, 175
BpuMI	CCSGG	1 cut(s)	18
BsaHI	GRCGYC	1 cut(s)	269
BsaJI	CCNNGG	3 cut(s)	17, 83, 94
Bse1I	ACTGG	1 cut(s)	157
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	3 cut(s)	17, 83, 94
BseGI	GGATG	1 cut(s)	277
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	2 cut(s)	260, 266
BseNI	ACTGG	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	175
Bsh1236I	CGCG	1 cut(s)	85
BshFI	GGCC	1 cut(s)	79
BshNI	GGYRCC	1 cut(s)	215
BsiSI	CCGG	2 cut(s)	17, 219
BslFI	GGGAC	1 cut(s)	218
BsmAI	GTCTC	2 cut(s)	255, 260
BsmBI	CGTCTC	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	1 cut(s)	79
Bsp143I	GATC	2 cut(s)	114, 238
BspACI	CCGC	2 cut(s)	83, 85
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	2 cut(s)	259, 265
BspFNI	CGCG	1 cut(s)	85
BspLI	GGNNCC	2 cut(s)	92, 217
BspMI	ACCTGC	1 cut(s)	110
BspPI	GGATC	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	157
BssECI	CCNNGG	3 cut(s)	17, 83, 94
BssMI	GATC	2 cut(s)	114, 238
BssNI	GRCGYC	1 cut(s)	269
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	1 cut(s)	282
BstACI	GRCGYC	1 cut(s)	269
BstDEI	CTNAG	2 cut(s)	246, 252
BstDSI	CCRYGG	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	277
BstFNI	CGCG	1 cut(s)	85
BstKTI	GATC	2 cut(s)	117, 241
BstMAI	GTCTC	2 cut(s)	255, 260
BstMBI	GATC	2 cut(s)	114, 238
BstNI	CCWGG	1 cut(s)	282
BstSCI	CCNGG	2 cut(s)	16, 280
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	79
BtgI	CCRYGG	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	164
BveI	ACCTGC	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	91
Cfr42I	CCGCGG	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	28
CviJI	RGCY	3 cut(s)	79, 156, 256
CviKI_1	RGCY	3 cut(s)	79, 156, 256
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	2 cut(s)	246, 252
DpnI	GATC	2 cut(s)	116, 240
DpnII	GATC	2 cut(s)	114, 238
EaeI	YGGCCR	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	91
EcoO109I	RGGNCCY	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	94
Esp3I	CGTCTC	1 cut(s)	260
FaiI	YATR	2 cut(s)	262, 297
FaqI	GGGAC	1 cut(s)	218
FblI	GTMKAC	1 cut(s)	146
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	1 cut(s)	264
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	2 cut(s)	95, 153
GluI	GCNGC	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	79
HapII	CCGG	2 cut(s)	17, 219
Hin1I	GRCGYC	1 cut(s)	269
HpaII	CCGG	2 cut(s)	17, 219
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	3 cut(s)	28, 147, 273
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	3 cut(s)	28, 147, 273
HpyAV	CCTTC	1 cut(s)	16
HpyCH4IV	ACGT	1 cut(s)	269
HpyCH4V	TGCA	2 cut(s)	38, 191
HpyF3I	CTNAG	2 cut(s)	246, 252
HpySE526I	ACGT	1 cut(s)	269
Hsp92I	GRCGYC	1 cut(s)	269
KspI	CCGCGG	1 cut(s)	86
Kzo9I	GATC	2 cut(s)	114, 238
LpnPI	CCDG	8 cut(s)	30, 61, 105, 159, 170, 232, 267, 294
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	2 cut(s)	3, 175
MaeI	CTAG	2 cut(s)	95, 153
MaeII	ACGT	1 cut(s)	269
MalI	GATC	2 cut(s)	116, 240
MboI	GATC	2 cut(s)	114, 238
MboII	GAAGA	2 cut(s)	22, 61
MlsI	TGGCCA	1 cut(s)	79
MluCI	AATT	1 cut(s)	298
MluNI	TGGCCA	1 cut(s)	79
MnlI	CCTC	2 cut(s)	81, 207
Mox20I	TGGCCA	1 cut(s)	79
MroXI	GAANNNNTTC	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	79
MseI	TTAA	1 cut(s)	301
Msp20I	TGGCCA	1 cut(s)	79
MspA1I	CMGCKG	1 cut(s)	85
MspI	CCGG	2 cut(s)	17, 219
MspR9I	CCNGG	2 cut(s)	18, 282
MvaI	CCWGG	1 cut(s)	282
MvnI	CGCG	1 cut(s)	85
NciI	CCSGG	1 cut(s)	18
NdeII	GATC	2 cut(s)	114, 238
NlaIV	GGNNCC	2 cut(s)	92, 217
PaqCI	CACCTGC	1 cut(s)	110
PdmI	GAANNNNTTC	1 cut(s)	53
PfoI	TCCNGGA	1 cut(s)	280
PkrI	GCNGC	1 cut(s)	190
PpuMI	RGGWCCY	1 cut(s)	91
Psp5II	RGGWCCY	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	2 cut(s)	92, 217
PspPI	GGNCC	1 cut(s)	91
PspPPI	RGGWCCY	1 cut(s)	91
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SacII	CCGCGG	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	301
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	2 cut(s)	114, 238
Sau96I	GGNCC	1 cut(s)	91
ScrFI	CCNGG	2 cut(s)	18, 282
SetI	ASST	8 cut(s)	27, 72, 100, 124, 178, 199, 258, 272
SfaNI	GCATC	2 cut(s)	3, 175
Sfr303I	CCGCGG	1 cut(s)	86
SgrBI	CCGCGG	1 cut(s)	86
SinI	GGWCC	1 cut(s)	91
Sse9I	AATT	1 cut(s)	298
SsiI	CCGC	2 cut(s)	83, 85
SspMI	CTAG	2 cut(s)	95, 153
StyD4I	CCNGG	2 cut(s)	16, 280
StyI	CCWWGG	1 cut(s)	94
TaiI	ACGT	1 cut(s)	272
TasI	AATT	1 cut(s)	298
Tru1I	TTAA	1 cut(s)	301
Tru9I	TTAA	1 cut(s)	301
TscAI	CASTG	1 cut(s)	164
TseI	GCWGC	1 cut(s)	188
TspRI	CASTG	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	91
XmaJI	CCTAGG	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	146
XmnI	GAANNNNTTC	1 cut(s)	53
XspI	CTAG	2 cut(s)	95, 153
ZraI	GACGTC	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.