pycom08g07420

f-box protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Forward (+)
6000982 .. 6001537
556 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 456 bp
ATGAAGTTACATTTTTGTCCTCTTACTTACAAGGTACAAGTCAATTTTAACGGTCATTTAACCGAATATCTAGAATCGACTAAGGTAAACATCAATTTGGCTAAACTAAAAACACAAAGATTAAAGGCAAATTACGACACAGAAACAACAGATGCAAGGGGCCAGAGAAAGAAACAAATTAGGCAGGTAAAAGAGAAAAAGCAGAGTAAAAAGAAGTGGGAGGAGCAGGACATATTCGTCAATACAGAGACAGAAAGCCAAAACCAAAACAAGGCGCATTCATTTCAGAAAATTGTCGTCTTCGAAAACGCACGGAAACAGGTCCCCACTGGGCCACTCCACACACACACTCCACCCTCCATATTACCCACCTCTTCTTTCCAGACATCCCACAGCTCATACAATTTGGGCTCTGGGTTTTCCGATTCCCCACCAAATCCTCCCGGAACTACCTAA

Protein Analysis

152

Amino Acids

17.23

Weight (kDa)

9.71

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 236
Acc36I ACCTGC 1 cut(s) 175
AfaI GTAC 1 cut(s) 36
AfiI CCNNNNNNNGG 1 cut(s) 271
AluBI AGCT 1 cut(s) 396
AluI AGCT 1 cut(s) 396
Alw26I GTCTC 1 cut(s) 242
AoxI GGCC 2 cut(s) 160, 332
AspLEI GCGC 1 cut(s) 277
AspS9I GGNCC 3 cut(s) 160, 322, 332
AsuC2I CCSGG 1 cut(s) 444
AsuII TTCGAA 1 cut(s) 303
AvaII GGWCC 1 cut(s) 322
BanII GRGCYC 1 cut(s) 413
BbsI GAAGAC 1 cut(s) 292
BcnI CCSGG 1 cut(s) 444
BcoDI GTCTC 1 cut(s) 242
BfaI CTAG 1 cut(s) 71
BfuAI ACCTGC 1 cut(s) 175
Bme1390I CCNGG 1 cut(s) 444
Bme18I GGWCC 1 cut(s) 322
BmgT120I GGNCC 3 cut(s) 160, 322, 332
BmiI GGNNCC 2 cut(s) 161, 324
BmrFI CCNGG 1 cut(s) 444
BmrI ACTGGG 1 cut(s) 339
BmsI GCATC 1 cut(s) 142
BmuI ACTGGG 1 cut(s) 339
BpiI GAAGAC 1 cut(s) 292
Bpu14I TTCGAA 1 cut(s) 303
BpuMI CCSGG 1 cut(s) 444
BsaXI ACNNNNNCTCC 2 cut(s) 334, 364
Bsc4I CCNNNNNNNGG 1 cut(s) 271
Bse1I ACTGG 1 cut(s) 334
BseGI GGATG 1 cut(s) 386
BseLI CCNNNNNNNGG 1 cut(s) 271
BseNI ACTGG 1 cut(s) 334
BseRI GAGGAG 1 cut(s) 236
BshFI GGCC 2 cut(s) 162, 334
BsiSI CCGG 1 cut(s) 444
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 1 cut(s) 271
BsmAI GTCTC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 308
BsmI GAATGC 1 cut(s) 277
BsnI GGCC 2 cut(s) 162, 334
Bsp119I TTCGAA 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 413
BspANI GGCC 2 cut(s) 162, 334
BspLI GGNNCC 2 cut(s) 161, 324
BspMI ACCTGC 1 cut(s) 175
BspT104I TTCGAA 1 cut(s) 303
BsrI ACTGG 1 cut(s) 334
Bst4CI ACNGT 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 379
BstBI TTCGAA 1 cut(s) 303
BstDEI CTNAG 1 cut(s) 81
BstF5I GGATG 1 cut(s) 386
BstHHI GCGC 1 cut(s) 277
BstMAI GTCTC 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 442
BstV2I GAAGAC 1 cut(s) 292
BsuRI GGCC 2 cut(s) 162, 334
BtsCI GGATG 1 cut(s) 386
BtsIMutI CAGTG 1 cut(s) 327
BveI ACCTGC 1 cut(s) 175
CfoI GCGC 1 cut(s) 277
Cfr13I GGNCC 3 cut(s) 160, 322, 332
Csp6I GTAC 1 cut(s) 35
CviJI RGCY 6 cut(s) 101, 162, 258, 334, 396, 411
CviKI_1 RGCY 6 cut(s) 101, 162, 258, 334, 396, 411
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 1 cut(s) 81
DrdI GACNNNNNNGTC 1 cut(s) 236
DseDI GACNNNNNNGTC 1 cut(s) 236
Eam1104I CTCTTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 413
Eco47I GGWCC 1 cut(s) 322
EcoO109I RGGNCCY 1 cut(s) 322
EcoT38I GRGCYC 1 cut(s) 413
FaiI YATR 3 cut(s) 233, 362, 400
FaqI GGGAC 1 cut(s) 308
FokI GGATG 1 cut(s) 373
FriOI GRGCYC 1 cut(s) 413
FspBI CTAG 1 cut(s) 71
GlaI GCGC 1 cut(s) 276
HaeIII GGCC 2 cut(s) 162, 334
HapII CCGG 1 cut(s) 444
HhaI GCGC 1 cut(s) 277
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HinfI GANTC 2 cut(s) 74, 425
HpaII CCGG 1 cut(s) 444
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 2 cut(s) 288, 424
Hpy188III TCNNGA 2 cut(s) 71, 382
Hpy8I GTNNAC 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4V TGCA 1 cut(s) 155
HpyF3I CTNAG 1 cut(s) 81
HspAI GCGC 1 cut(s) 275
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 7 cut(s) 170, 176, 212, 305, 315, 395, 399
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 6
MboII GAAGA 2 cut(s) 292, 366
MhlI GDGCHC 1 cut(s) 413
MluCI AATT 6 cut(s) 43, 94, 130, 177, 291, 403
MnlI CCTC 5 cut(s) 30, 214, 367, 382, 450
MseI TTAA 3 cut(s) 48, 59, 122
MspI CCGG 1 cut(s) 444
MspR9I CCNGG 1 cut(s) 444
Mva1269I GAATGC 1 cut(s) 277
NciI CCSGG 1 cut(s) 444
NlaIV GGNNCC 2 cut(s) 161, 324
NspV TTCGAA 1 cut(s) 303
PctI GAATGC 1 cut(s) 277
PfeI GAWTC 2 cut(s) 74, 425
PfoI TCCNGGA 1 cut(s) 442
PpuMI RGGWCCY 1 cut(s) 322
Psp5II RGGWCCY 1 cut(s) 322
PspN4I GGNNCC 2 cut(s) 161, 324
PspPI GGNCC 3 cut(s) 160, 322, 332
PspPPI RGGWCCY 1 cut(s) 322
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
SaqAI TTAA 3 cut(s) 48, 59, 122
Sau96I GGNCC 3 cut(s) 160, 322, 332
ScrFI CCNGG 1 cut(s) 444
SduI GDGCHC 1 cut(s) 413
SetI ASST 7 cut(s) 36, 87, 189, 324, 374, 398, 455
SfaNI GCATC 1 cut(s) 142
SfuI TTCGAA 1 cut(s) 303
SinI GGWCC 1 cut(s) 322
Sse9I AATT 6 cut(s) 43, 94, 130, 177, 291, 403
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 442
TaaI ACNGT 1 cut(s) 53
TaqI TCGA 2 cut(s) 77, 303
TasI AATT 6 cut(s) 43, 94, 130, 177, 291, 403
TfiI GAWTC 2 cut(s) 74, 425
Tru1I TTAA 3 cut(s) 48, 59, 122
Tru9I TTAA 3 cut(s) 48, 59, 122
TscAI CASTG 1 cut(s) 334
TspDTI ATGAA 2 cut(s) 17, 270
TspGWI ACGGA 1 cut(s) 328
TspRI CASTG 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 322
XbaI TCTAGA 1 cut(s) 70
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.