pycom08g07460

Receptor protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Forward (+)
6022620 .. 6023377
758 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 462 bp
ATGGTTTATGCGGATCATTTCGTCAAATTTGCCGTCTTCTTCTTTTCTTTTGTGACAGCTCTCTGCAGCCAATCCCCCACTCTCATCTCAAAAGGCTACTATGTTTCTCATTTTCTTCTCTCTCTCGCCATTAACTCTACAACTTCGTCTTCAACCTCCGACACTCTGAGTAGAGCCTTCTCCCTCTCTGTCGAGAAACCAGAAGATGTTCTAATTTCACCTGATGGAGTTTTCACCGCCGTCTTTCACCAAGTTGGCAACAATTCATATTGCTTTGCCGTTTGGTTCTCCGAGCCTTCACCATCCTCCGACAGCCACCAAAACCCTACCGTGGTCTGGAAGGCCAATCTCCTCTGTCCAGTCAACGTAAAACGCTCAAATCTCTCCCTTAACCCTCCACAGCTCCGGCAATCTGGTTTTACGAAACTCCGACGATTATGTCGTTTTGTGGCAGAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

154

Amino Acids

17.03

Weight (kDa)

8.76

Isoelectric Point (pI)

50.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 438
AciI CCGC 2 cut(s) 11, 237
AclWI GGATC 1 cut(s) 21
AcsI RAATTY 1 cut(s) 26
AfiI CCNNNNNNNGG 2 cut(s) 331, 336
AgsI TTSAA 1 cut(s) 153
AluBI AGCT 3 cut(s) 59, 403, 457
AluI AGCT 3 cut(s) 59, 403, 457
AlwI GGATC 1 cut(s) 21
AoxI GGCC 1 cut(s) 342
ApeKI GCWGC 1 cut(s) 66
ApoI RAATTY 1 cut(s) 26
ArsI GACNNNNNNTTYG 2 cut(s) 18, 50
Asp700I GAANNNNTTC 1 cut(s) 207
AsuHPI GGTGA 4 cut(s) 210, 226, 239, 291
BbsI GAAGAC 2 cut(s) 28, 141
BbvI GCAGC 1 cut(s) 78
BccI CCATC 2 cut(s) 218, 310
BceAI ACGGC 3 cut(s) 17, 224, 263
BfmI CTRYAG 1 cut(s) 64
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
BpiI GAAGAC 2 cut(s) 28, 141
BsaJI CCNNGG 1 cut(s) 330
Bsc4I CCNNNNNNNGG 2 cut(s) 331, 336
Bse1I ACTGG 1 cut(s) 359
BseDI CCNNGG 1 cut(s) 330
BseGI GGATG 1 cut(s) 302
BseLI CCNNNNNNNGG 2 cut(s) 331, 336
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 359
BseRI GAGGAG 1 cut(s) 341
BseXI GCAGC 1 cut(s) 78
BshFI GGCC 1 cut(s) 344
BsiSI CCGG 1 cut(s) 406
BslI CCNNNNNNNGG 2 cut(s) 331, 336
BsnI GGCC 1 cut(s) 344
Bsp143I GATC 1 cut(s) 13
BspACI CCGC 2 cut(s) 11, 237
BspANI GGCC 1 cut(s) 344
BspCNI CTCAG 1 cut(s) 159
BspMAI CTGCAG 1 cut(s) 68
BspPI GGATC 1 cut(s) 21
BsrI ACTGG 1 cut(s) 359
BssECI CCNNGG 1 cut(s) 330
BssMI GATC 1 cut(s) 13
Bst4CI ACNGT 1 cut(s) 331
BstDEI CTNAG 1 cut(s) 167
BstDSI CCRYGG 1 cut(s) 330
BstF5I GGATG 1 cut(s) 302
BstKTI GATC 1 cut(s) 16
BstMBI GATC 1 cut(s) 13
BstSFI CTRYAG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 78
BstV2I GAAGAC 2 cut(s) 28, 141
BsuRI GGCC 1 cut(s) 344
BtgI CCRYGG 1 cut(s) 330
BtsCI GGATG 1 cut(s) 302
CviJI RGCY 9 cut(s) 59, 69, 96, 176, 295, 315, 344, 403, 457
CviKI_1 RGCY 9 cut(s) 59, 69, 96, 176, 295, 315, 344, 403, 457
DdeI CTNAG 1 cut(s) 167
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
DrdI GACNNNNNNGTC 1 cut(s) 438
DseDI GACNNNNNNGTC 1 cut(s) 438
FaiI YATR 4 cut(s) 9, 102, 268, 439
Fnu4HI GCNGC 1 cut(s) 67
FokI GGATG 1 cut(s) 289
Fsp4HI GCNGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 67
HaeIII GGCC 1 cut(s) 344
HapII CCGG 1 cut(s) 406
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HpaII CCGG 1 cut(s) 406
HphI GGTGA 4 cut(s) 210, 226, 239, 291
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 5 cut(s) 160, 168, 292, 310, 431
Hpy188III TCNNGA 2 cut(s) 193, 337
Hpy8I GTNNAC 1 cut(s) 364
Hpy99I CGWCG 1 cut(s) 435
HpyAV CCTTC 3 cut(s) 187, 306, 334
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 1 cut(s) 66
HpyF3I CTNAG 1 cut(s) 167
HpySE526I ACGT 1 cut(s) 366
Kzo9I GATC 1 cut(s) 13
LmnI GCTCC 1 cut(s) 408
LpnPI CCDG 6 cut(s) 213, 234, 322, 372, 399, 419
Lsp1109I GCAGC 1 cut(s) 78
MaeII ACGT 1 cut(s) 366
MaeIII GTNAC 1 cut(s) 52
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 5 cut(s) 28, 31, 107, 141, 215
MluCI AATT 3 cut(s) 26, 213, 262
MmeI TCCRAC 3 cut(s) 183, 333, 454
MnlI CCTC 5 cut(s) 166, 194, 316, 362, 405
MroXI GAANNNNTTC 1 cut(s) 207
MseI TTAA 2 cut(s) 132, 390
MspI CCGG 1 cut(s) 406
NdeII GATC 1 cut(s) 13
NmuCI GTSAC 1 cut(s) 52
PcsI WCGNNNNNNNCGW 1 cut(s) 439
PdmI GAANNNNTTC 1 cut(s) 207
PkrI GCNGC 1 cut(s) 68
PstI CTGCAG 1 cut(s) 68
SaqAI TTAA 2 cut(s) 132, 390
SatI GCNGC 1 cut(s) 67
Sau3AI GATC 1 cut(s) 13
SetI ASST 6 cut(s) 61, 158, 223, 369, 405, 459
SfcI CTRYAG 1 cut(s) 64
Sse9I AATT 3 cut(s) 26, 213, 262
SsiI CCGC 2 cut(s) 11, 237
TaaI ACNGT 1 cut(s) 331
TaiI ACGT 1 cut(s) 369
TaqI TCGA 1 cut(s) 192
TasI AATT 3 cut(s) 26, 213, 262
Tru1I TTAA 2 cut(s) 132, 390
Tru9I TTAA 2 cut(s) 132, 390
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 1 cut(s) 66
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 1 cut(s) 255
XapI RAATTY 1 cut(s) 26
XmnI GAANNNNTTC 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.