pycom08g07520

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Forward (+)
6052687 .. 6053097
411 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 411 bp
ATGAGATTGGTGCTTTGCCCCTCGATCCATGAGGTACCAAGGAACGGCAAAGACGACACTGATAATAACGAGGCCTGCAAATACGTGCTTCTTCTCACCGCTGTACAAGTAGTGCTCCACAGCCCAACGACATCAAGAAGTCGAGAATCCGACCCTTACGACTCCGGCTTTGACCAAATCGTTGACGTCACTGACAACCTACTCACCGCCAACCGCCAAAACCCACCTGACTGGTACACCGTTCTTCAAAAATCTCGACCCAGATCCGCAAACCCAACTCTCATCCAGACCCAATTCAAGAAACTCAAGACCCAGTTCGCAAACCCAGCAAAAACTGGAAAAAAAAAAATCAAAAGGAAAATCTACCCAGAAATTTGGAAAGAAAATAAGCTCGAAACAGAGGGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

137

Amino Acids

15.6

Weight (kDa)

9.49

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 189
Acc65I GGTACC 1 cut(s) 34
AccB1I GGYRCC 1 cut(s) 34
AciI CCGC 4 cut(s) 99, 207, 214, 267
AclWI GGATC 2 cut(s) 19, 258
AcsI RAATTY 1 cut(s) 372
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 3 cut(s) 36, 105, 236
AfiI CCNNNNNNNGG 1 cut(s) 44
AgsI TTSAA 2 cut(s) 248, 298
AluBI AGCT 1 cut(s) 391
AluI AGCT 1 cut(s) 391
Alw21I GWGCWC 1 cut(s) 117
AlwI GGATC 2 cut(s) 19, 258
AoxI GGCC 1 cut(s) 72
ApoI RAATTY 1 cut(s) 372
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
Asp718I GGTACC 1 cut(s) 34
AsuHPI GGTGA 2 cut(s) 88, 196
BanI GGYRCC 1 cut(s) 34
Bbv12I GWGCWC 1 cut(s) 117
BceAI ACGGC 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 36
BmrI ACTGGG 1 cut(s) 307
BmuI ACTGGG 1 cut(s) 307
BpuEI CTTGAG 1 cut(s) 290
BsaAI YACGTR 1 cut(s) 85
BsaHI GRCGYC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 38
Bsc4I CCNNNNNNNGG 1 cut(s) 44
Bse1I ACTGG 3 cut(s) 236, 313, 340
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 44
BseNI ACTGG 3 cut(s) 236, 313, 340
BseYI CCCAGC 1 cut(s) 325
BshFI GGCC 1 cut(s) 74
BshNI GGYRCC 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 117
BsiSI CCGG 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 44
BsnI GGCC 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 117
Bsp1407I TGTACA 1 cut(s) 103
Bsp143I GATC 2 cut(s) 24, 263
BspACI CCGC 4 cut(s) 99, 207, 214, 267
BspANI GGCC 1 cut(s) 74
BspLI GGNNCC 1 cut(s) 36
BspPI GGATC 2 cut(s) 19, 258
BspT107I GGYRCC 1 cut(s) 34
BsrGI TGTACA 1 cut(s) 103
BsrI ACTGG 3 cut(s) 236, 313, 340
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 2 cut(s) 24, 263
BssNI GRCGYC 1 cut(s) 186
BssT1I CCWWGG 1 cut(s) 38
Bst4CI ACNGT 1 cut(s) 241
BstACI GRCGYC 1 cut(s) 186
BstAUI TGTACA 1 cut(s) 103
BstBAI YACGTR 1 cut(s) 85
BstC8I GCNNGC 1 cut(s) 76
BstF5I GGATG 1 cut(s) 282
BstKTI GATC 2 cut(s) 27, 266
BstMBI GATC 2 cut(s) 24, 263
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstX2I RGATCY 1 cut(s) 263
BstXI CCANNNNNNTGG 2 cut(s) 231, 375
BstYI RGATCY 1 cut(s) 263
BsuRI GGCC 1 cut(s) 74
BtsCI GGATG 1 cut(s) 282
BtsIMutI CAGTG 2 cut(s) 57, 189
Cac8I GCNNGC 1 cut(s) 76
Csp6I GTAC 3 cut(s) 35, 104, 235
CviAII CATG 1 cut(s) 29
CviJI RGCY 4 cut(s) 74, 123, 168, 391
CviKI_1 RGCY 4 cut(s) 74, 123, 168, 391
CviQI GTAC 3 cut(s) 35, 104, 235
DpnI GATC 2 cut(s) 26, 265
DpnII GATC 2 cut(s) 24, 263
Eco130I CCWWGG 1 cut(s) 38
Eco147I AGGCCT 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 1 cut(s) 32
FaiI YATR 1 cut(s) 30
FatI CATG 1 cut(s) 28
FokI GGATG 1 cut(s) 269
GsaI CCCAGC 1 cut(s) 329
HaeIII GGCC 1 cut(s) 74
HapII CCGG 1 cut(s) 165
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 1 cut(s) 32
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HinfI GANTC 2 cut(s) 146, 161
HpaII CCGG 1 cut(s) 165
HphI GGTGA 2 cut(s) 88, 196
Hpy166II GTNNAC 2 cut(s) 184, 237
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 6 cut(s) 135, 143, 255, 286, 298, 307
Hpy8I GTNNAC 2 cut(s) 184, 237
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4IV ACGT 2 cut(s) 84, 186
HpyCH4V TGCA 1 cut(s) 78
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpySE526I ACGT 2 cut(s) 84, 186
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 1 cut(s) 32
KpnI GGTACC 1 cut(s) 38
Kzo9I GATC 2 cut(s) 24, 263
LmnI GCTCC 1 cut(s) 120
MaeII ACGT 2 cut(s) 84, 186
MaeIII GTNAC 1 cut(s) 187
MalI GATC 2 cut(s) 26, 265
MboI GATC 2 cut(s) 24, 263
MboII GAAGA 2 cut(s) 83, 236
MflI RGATCY 1 cut(s) 263
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 2 cut(s) 293, 372
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 4 cut(s) 25, 31, 64, 394
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 326
NdeII GATC 2 cut(s) 24, 263
NlaIII CATG 1 cut(s) 32
NlaIV GGNNCC 1 cut(s) 36
NmuCI GTSAC 1 cut(s) 187
PceI AGGCCT 1 cut(s) 74
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PfeI GAWTC 1 cut(s) 146
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
Ppu21I YACGTR 1 cut(s) 85
PspFI CCCAGC 1 cut(s) 325
PspN4I GGNNCC 1 cut(s) 36
PsuI RGATCY 1 cut(s) 263
RsaI GTAC 3 cut(s) 36, 105, 236
RsaNI GTAC 3 cut(s) 35, 104, 235
Sau3AI GATC 2 cut(s) 24, 263
SchI GAGTC 1 cut(s) 155
SduI GDGCHC 1 cut(s) 117
SetI ASST 6 cut(s) 36, 87, 189, 201, 229, 393
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 2 cut(s) 293, 372
SseBI AGGCCT 1 cut(s) 74
SsiI CCGC 4 cut(s) 99, 207, 214, 267
StuI AGGCCT 1 cut(s) 74
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 1 cut(s) 241
TaiI ACGT 2 cut(s) 87, 189
TaqI TCGA 4 cut(s) 23, 142, 256, 393
TasI AATT 2 cut(s) 293, 372
TatI WGTACW 1 cut(s) 103
TfiI GAWTC 1 cut(s) 146
TscAI CASTG 2 cut(s) 64, 196
TseFI GTSAC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 187
TspRI CASTG 2 cut(s) 64, 196
XapI RAATTY 1 cut(s) 372
ZraI GACGTC 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.