Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

6142455 .. 6143738

Gene Structure 1284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGAGTACCAGAACAATGATCACGGCGTTACTATATTGTGCTGTAGCACCAACCATATTAGCTGGCCAGATTGATCCTGTTCTCTTTGAGGCTCTATATGCATCCCAGCATGCAATCTTTCTCGGTGCCAAGATCCCACAGATATGGGCGAACTTTTCTAATAAAAGTACAGGGGAGCTCAGCTTCTTAACGAACTTAATGAATTTTGCAGGTTCCATGGTGAGAGTTTTCACCAGCATCCAAGAACAAGCACCCAAAAGTGTTCTGTTGGGCTCTGTGATTGGCATCGCAACGAATTTTACCCTCCTGAGTCAGATACTGATATACCAAAAGCAAAAGCCGCGTGCTGAGAAGGGAAAGAAAACGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

124

Amino Acids

13.45

Weight (kDa)

9.61

Isoelectric Point (pI)

22.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	37 - 87	5.8e-13	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	125
AccII	CGCG	1 cut(s)	343
AciI	CCGC	1 cut(s)	341
AclWI	GGATC	2 cut(s)	68, 127
AcoI	YGGCCR	1 cut(s)	64
AcsI	RAATTY	2 cut(s)	202, 295
AfaI	GTAC	2 cut(s)	7, 169
AluBI	AGCT	3 cut(s)	62, 178, 183
AluI	AGCT	3 cut(s)	62, 178, 183
Alw21I	GWGCWC	1 cut(s)	180
AlwI	GGATC	2 cut(s)	68, 127
AlwNI	CAGNNNCTG	1 cut(s)	319
AoxI	GGCC	1 cut(s)	64
ApoI	RAATTY	2 cut(s)	202, 295
AsuHPI	GGTGA	2 cut(s)	223, 232
BalI	TGGCCA	1 cut(s)	66
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	2 cut(s)	180, 275
Bbv12I	GWGCWC	1 cut(s)	180
BceAI	ACGGC	1 cut(s)	39
BclI	TGATCA	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	42
BfuAI	ACCTGC	1 cut(s)	200
BisI	GCNGC	1 cut(s)	341
BlpI	GCTNAGC	1 cut(s)	179
BlsI	GCNGC	1 cut(s)	342
BmiI	GGNNCC	2 cut(s)	127, 214
BmsI	GCATC	3 cut(s)	110, 246, 294
Bpu1102I	GCTNAGC	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	216
Bse8I	GATNNNNATC	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	2 cut(s)	101, 237
BseJI	GATNNNNATC	1 cut(s)	284
BseMII	CTCAG	3 cut(s)	193, 299, 339
BseYI	CCCAGC	1 cut(s)	105
Bsh1236I	CGCG	1 cut(s)	343
BshFI	GGCC	1 cut(s)	66
BshNI	GGYRCC	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	66
Bsp1286I	GDGCHC	2 cut(s)	180, 275
Bsp143I	GATC	3 cut(s)	18, 73, 132
Bsp1720I	GCTNAGC	1 cut(s)	179
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	1 cut(s)	341
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	3 cut(s)	192, 300, 340
BspFNI	CGCG	1 cut(s)	343
BspLI	GGNNCC	2 cut(s)	127, 214
BspMI	ACCTGC	1 cut(s)	200
BspPI	GGATC	2 cut(s)	68, 127
BspT107I	GGYRCC	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	3 cut(s)	18, 73, 132
BssT1I	CCWWGG	1 cut(s)	216
BstC8I	GCNNGC	3 cut(s)	64, 111, 345
BstDEI	CTNAG	3 cut(s)	179, 308, 348
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	2 cut(s)	101, 237
BstFNI	CGCG	1 cut(s)	343
BstKTI	GATC	3 cut(s)	21, 76, 135
BstMBI	GATC	3 cut(s)	18, 73, 132
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 340
BstNSI	RCATGY	1 cut(s)	113
BstSFI	CTRYAG	1 cut(s)	42
BstUI	CGCG	1 cut(s)	343
BstX2I	RGATCY	1 cut(s)	132
BstXI	CCANNNNNNTGG	1 cut(s)	144
BstYI	RGATCY	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	66
BtgI	CCRYGG	1 cut(s)	216
BtgZI	GCGATG	1 cut(s)	271
BtsCI	GGATG	2 cut(s)	101, 237
BveI	ACCTGC	1 cut(s)	200
Cac8I	GCNNGC	3 cut(s)	64, 111, 345
CaiI	CAGNNNCTG	1 cut(s)	319
Csp6I	GTAC	2 cut(s)	6, 168
CviAII	CATG	2 cut(s)	110, 217
CviJI	RGCY	7 cut(s)	62, 66, 92, 178, 183, 273, 340
CviKI_1	RGCY	7 cut(s)	62, 66, 92, 178, 183, 273, 340
CviQI	GTAC	2 cut(s)	6, 168
DdeI	CTNAG	3 cut(s)	179, 308, 348
DpnI	GATC	3 cut(s)	20, 75, 134
DpnII	GATC	3 cut(s)	18, 73, 132
EaeI	YGGCCR	1 cut(s)	64
Ecl136II	GAGCTC	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	2 cut(s)	180, 275
Eco53kI	GAGCTC	1 cut(s)	178
EcoICRI	GAGCTC	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	216
EcoT22I	ATGCAT	1 cut(s)	103
EcoT38I	GRGCYC	2 cut(s)	180, 275
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	113, 220
FaiI	YATR	8 cut(s)	34, 56, 97, 99, 111, 145, 218, 325
FatI	CATG	2 cut(s)	109, 216
FbaI	TGATCA	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	341
FokI	GGATG	2 cut(s)	88, 224
FriOI	GRGCYC	2 cut(s)	180, 275
Fsp4HI	GCNGC	1 cut(s)	341
GluI	GCNGC	1 cut(s)	341
GsaI	CCCAGC	1 cut(s)	109
HaeIII	GGCC	1 cut(s)	66
Hin1II	CATG	2 cut(s)	113, 220
HinfI	GANTC	1 cut(s)	310
HphI	GGTGA	2 cut(s)	223, 232
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	1 cut(s)	307
HpyAV	CCTTC	1 cut(s)	346
HpyCH4V	TGCA	3 cut(s)	101, 113, 209
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 340
HpyF3I	CTNAG	3 cut(s)	179, 308, 348
Hsp92II	CATG	2 cut(s)	113, 220
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	3 cut(s)	18, 73, 132
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	9 cut(s)	22, 48, 80, 90, 119, 156, 195, 247, 320
LweI	GCATC	3 cut(s)	110, 246, 294
MaeIII	GTNAC	1 cut(s)	27
MalI	GATC	3 cut(s)	20, 75, 134
MboI	GATC	3 cut(s)	18, 73, 132
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	2 cut(s)	180, 275
MlsI	TGGCCA	1 cut(s)	66
MluCI	AATT	2 cut(s)	202, 295
MluNI	TGGCCA	1 cut(s)	66
MlyI	GAGTC	1 cut(s)	319
MnlI	CCTC	2 cut(s)	82, 314
Mox20I	TGGCCA	1 cut(s)	66
Mph1103I	ATGCAT	1 cut(s)	103
MscI	TGGCCA	1 cut(s)	66
MseI	TTAA	2 cut(s)	188, 197
MslI	CAYNNNNRTG	1 cut(s)	142
Msp20I	TGGCCA	1 cut(s)	66
MvnI	CGCG	1 cut(s)	343
MwoI	GCNNNNNNNGC	2 cut(s)	98, 340
NcoI	CCATGG	1 cut(s)	216
NdeII	GATC	3 cut(s)	18, 73, 132
NlaIII	CATG	2 cut(s)	113, 220
NlaIV	GGNNCC	2 cut(s)	127, 214
NsiI	ATGCAT	1 cut(s)	103
NspI	RCATGY	1 cut(s)	113
PaeI	GCATGC	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	342
PleI	GAGTC	1 cut(s)	318
PpsI	GAGTC	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	180
PspFI	CCCAGC	1 cut(s)	105
PspN4I	GGNNCC	2 cut(s)	127, 214
PstNI	CAGNNNCTG	1 cut(s)	319
PsuI	RGATCY	1 cut(s)	132
RsaI	GTAC	2 cut(s)	7, 169
RsaNI	GTAC	2 cut(s)	6, 168
RseI	CAYNNNNRTG	1 cut(s)	142
SacI	GAGCTC	1 cut(s)	180
SaqAI	TTAA	2 cut(s)	188, 197
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	3 cut(s)	18, 73, 132
SchI	GAGTC	1 cut(s)	319
SduI	GDGCHC	2 cut(s)	180, 275
SetI	ASST	4 cut(s)	64, 180, 185, 214
SfaNI	GCATC	3 cut(s)	110, 246, 294
SfcI	CTRYAG	1 cut(s)	42
SmiMI	CAYNNNNRTG	1 cut(s)	142
SphI	GCATGC	1 cut(s)	113
Sse9I	AATT	2 cut(s)	202, 295
SsiI	CCGC	1 cut(s)	341
SstI	GAGCTC	1 cut(s)	180
StyI	CCWWGG	1 cut(s)	216
TasI	AATT	2 cut(s)	202, 295
TatI	WGTACW	1 cut(s)	167
TauI	GCSGC	1 cut(s)	343
Tru1I	TTAA	2 cut(s)	188, 197
Tru9I	TTAA	2 cut(s)	188, 197
TspDTI	ATGAA	1 cut(s)	215
XapI	RAATTY	2 cut(s)	202, 295
XceI	RCATGY	1 cut(s)	113
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.