Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6339382 .. 6339971

Gene Structure 590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTTTCACTTCTCCTCGGAATCCATAGCCAAACTTAAAGCAAAGGCCAATGCAGAGTCCAAGACCACAAAAATTTCTTCCTTCCGTTCCTTATCTGCCCTTCTCTGGCGCTCCATTACTCGTGCGCGTTGTCTATCACCAGATCAAGGAACCAGCTGCAGGATATTCAATACCTTGTACAATTTGGTTGCGAATAATAGAGCAAGAATAAACCCACCGTTGTCTGGAGAATATTGTGGGAACTCAATTTACCCCGTTATATCAGAAACTGTTGCAGCAGGTGAGTTGCTTGAACATGGGTTTAGATGGGCGGCATGGAAGTTGCACGAGGCGGTGGTTAACCACAATGACAAGGTGATACGAGAGCTTCTTGATGCGTATATTATGATGGGGGGTTCACCAAGATTCAACATGTATGGAAATGAATTTGGAATGGGAAAAGGGATAGCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010143 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043170 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051179 GO:0071704 GO:0071840 GO:0090558 GO:0090626 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

152

Amino Acids

16.82

Weight (kDa)

9.44

Isoelectric Point (pI)

32.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	4 - 146	1.4e-18	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	269
Acc36I	ACCTGC	1 cut(s)	269
AccII	CGCG	1 cut(s)	127
AciI	CCGC	2 cut(s)	311, 332
AcsI	RAATTY	2 cut(s)	72, 425
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	4 cut(s)	105, 146, 159, 224
AflIII	ACRYGT	1 cut(s)	411
AgsI	TTSAA	3 cut(s)	169, 293, 409
AluBI	AGCT	2 cut(s)	156, 367
AluI	AGCT	2 cut(s)	156, 367
AlwNI	CAGNNNCTG	1 cut(s)	269
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	2 cut(s)	156, 275
ApoI	RAATTY	2 cut(s)	72, 425
AspLEI	GCGC	2 cut(s)	111, 127
AsuHPI	GGTGA	4 cut(s)	129, 293, 367, 390
BauI	CACGAG	2 cut(s)	120, 326
BbvI	GCAGC	2 cut(s)	143, 287
BccI	CCATC	2 cut(s)	300, 382
BfmI	CTRYAG	1 cut(s)	157
BfoI	RGCGCY	1 cut(s)	112
BfuAI	ACCTGC	1 cut(s)	269
BisI	GCNGC	3 cut(s)	157, 276, 312
BlsI	GCNGC	3 cut(s)	158, 277, 313
BmiI	GGNNCC	1 cut(s)	151
BmsI	GCATC	1 cut(s)	364
BpmI	CTGGAG	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	4 cut(s)	105, 146, 159, 224
BseDI	CCNNGG	1 cut(s)	15
BseLI	CCNNNNNNNGG	4 cut(s)	105, 146, 159, 224
BseRI	GAGGAG	1 cut(s)	4
BseXI	GCAGC	2 cut(s)	143, 287
Bsh1236I	CGCG	1 cut(s)	127
BshFI	GGCC	1 cut(s)	47
BslI	CCNNNNNNNGG	4 cut(s)	105, 146, 159, 224
BsnI	GGCC	1 cut(s)	47
Bsp1407I	TGTACA	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	2 cut(s)	311, 332
BspANI	GGCC	1 cut(s)	47
BspFNI	CGCG	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	151
BspMAI	CTGCAG	1 cut(s)	161
BspMI	ACCTGC	1 cut(s)	269
BsrGI	TGTACA	1 cut(s)	177
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	1 cut(s)	142
BssSI	CACGAG	2 cut(s)	120, 326
Bst2BI	CACGAG	2 cut(s)	120, 326
Bst4CI	ACNGT	2 cut(s)	219, 271
BstAUI	TGTACA	1 cut(s)	177
BstFNI	CGCG	1 cut(s)	127
BstH2I	RGCGCY	1 cut(s)	112
BstHHI	GCGC	2 cut(s)	111, 127
BstKTI	GATC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	142
BstNSI	RCATGY	1 cut(s)	415
BstSFI	CTRYAG	1 cut(s)	157
BstUI	CGCG	1 cut(s)	127
BstV1I	GCAGC	2 cut(s)	143, 287
BsuRI	GGCC	1 cut(s)	47
BveI	ACCTGC	1 cut(s)	269
CaiI	CAGNNNCTG	1 cut(s)	269
CfoI	GCGC	2 cut(s)	111, 127
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	3 cut(s)	296, 315, 412
CviJI	RGCY	4 cut(s)	29, 47, 156, 367
CviKI_1	RGCY	4 cut(s)	29, 47, 156, 367
CviQI	GTAC	1 cut(s)	178
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
FaeI	CATG	3 cut(s)	299, 318, 415
FaiI	YATR	8 cut(s)	26, 260, 297, 316, 381, 386, 413, 417
FatI	CATG	3 cut(s)	295, 314, 411
Fnu4HI	GCNGC	3 cut(s)	157, 276, 312
Fsp4HI	GCNGC	3 cut(s)	157, 276, 312
GlaI	GCGC	2 cut(s)	110, 126
GluI	GCNGC	3 cut(s)	157, 276, 312
GsuI	CTGGAG	1 cut(s)	246
HaeII	RGCGCY	1 cut(s)	112
HaeIII	GGCC	1 cut(s)	47
HhaI	GCGC	2 cut(s)	111, 127
Hin1II	CATG	3 cut(s)	299, 318, 415
Hin6I	GCGC	2 cut(s)	109, 125
HinP1I	GCGC	2 cut(s)	109, 125
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HinfI	GANTC	3 cut(s)	20, 56, 405
HpaI	GTTAAC	1 cut(s)	340
HphI	GGTGA	4 cut(s)	129, 293, 367, 390
Hpy166II	GTNNAC	2 cut(s)	340, 398
Hpy188I	TCNGA	2 cut(s)	19, 265
Hpy188III	TCNNGA	2 cut(s)	225, 371
Hpy8I	GTNNAC	2 cut(s)	340, 398
HpyAV	CCTTC	2 cut(s)	91, 110
HpyCH4III	ACNGT	2 cut(s)	219, 271
HpyCH4V	TGCA	4 cut(s)	53, 159, 275, 325
Hsp92II	CATG	3 cut(s)	299, 318, 415
HspAI	GCGC	2 cut(s)	109, 125
KspAI	GTTAAC	1 cut(s)	340
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	6 cut(s)	91, 145, 153, 166, 210, 264
Lsp1109I	GCAGC	2 cut(s)	143, 287
LweI	GCATC	1 cut(s)	364
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	1 cut(s)	69
MluCI	AATT	4 cut(s)	72, 181, 246, 425
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	2 cut(s)	25, 322
MseI	TTAA	2 cut(s)	36, 339
MspA1I	CMGCKG	1 cut(s)	156
MvnI	CGCG	1 cut(s)	127
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	3 cut(s)	299, 318, 415
NlaIV	GGNNCC	1 cut(s)	151
NspI	RCATGY	1 cut(s)	415
PaqCI	CACCTGC	1 cut(s)	269
PciI	ACATGT	1 cut(s)	411
PfeI	GAWTC	2 cut(s)	20, 405
PkrI	GCNGC	3 cut(s)	158, 277, 313
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PscI	ACATGT	1 cut(s)	411
PspN4I	GGNNCC	1 cut(s)	151
PsrI	GAACNNNNNNTAC	2 cut(s)	233, 265
PstI	CTGCAG	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	269
PvuII	CAGCTG	1 cut(s)	156
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	36, 339
SatI	GCNGC	3 cut(s)	157, 276, 312
Sau3AI	GATC	1 cut(s)	142
SchI	GAGTC	1 cut(s)	65
SetI	ASST	5 cut(s)	158, 176, 283, 357, 369
SfaNI	GCATC	1 cut(s)	364
SfcI	CTRYAG	1 cut(s)	157
Sse9I	AATT	4 cut(s)	72, 181, 246, 425
SsiI	CCGC	2 cut(s)	311, 332
SspI	AATATT	1 cut(s)	233
TaaI	ACNGT	2 cut(s)	219, 271
TasI	AATT	4 cut(s)	72, 181, 246, 425
TatI	WGTACW	1 cut(s)	177
TauI	GCSGC	1 cut(s)	314
TfiI	GAWTC	2 cut(s)	20, 405
Tru1I	TTAA	2 cut(s)	36, 339
Tru9I	TTAA	2 cut(s)	36, 339
TseI	GCWGC	2 cut(s)	156, 275
TspDTI	ATGAA	1 cut(s)	438
TspGWI	ACGGA	1 cut(s)	74
XapI	RAATTY	2 cut(s)	72, 425
XceI	RCATGY	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.