Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6375193 .. 6376188

Gene Structure 996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGAACTCTCAAAGCGTCAAACACATATCAGGGTGTTTTATCAATCCACACCAAGTCTCAGAGGAATCACAGCAACCATTGTACTTGGCCCCCACCGACCTCGCCATGCTCTCTGCCCACTATATCCAGAAAGGCCTCCTCTTTGCCAAACCTCCGGAAGCCATGGATAGCCGCCACAGGGCGGAGTTCGTCAATTCTCTTTTGGACAAGCTCAAGCACTCTCTCTCCCTCGCCCTTGTTCATTTTTACCCGCTTGCCGGCCGCCTCGCGACGAAGAAAGAAGAAAACCCACCTCTGTATTTGGTTTATGTAGACAACAGCAACAGCCCCGGAGCCAGATTCATCTATGCAGCTCTGGATGTGTCGGTTTCGGATATTCTTTCGCCAACTGACGTGCCCTTGGTGGTTCAGTCGTTTTTCGATCACGACAGAGCTGTTAACAACGACGGCCACACGGCGTCATTGCTGACGGTTCAGGTGACGGAGCTTGTGGACGGCATATTCATAGGGCTGTCCATGAATCACTGCCTTGGTGATGGGACTTCTTTCTGGCATTTCTTCAACACTTGGTCCAAGTTCTTTCAGGCAATAACACAAGGAGTGCATGACAATACCATCGTCCCCGGAATCTCCAGTCCGCCGGTCCTCAAGCGGTGGTTTCCGGACGGTCATGGGCCAATCATCAGCCTCCCTTACACAAACCCAGATGAGTTCATCGGCAGATTCGAAGCTCCCGAACTCAGAGAGAGAATGTTCCACTTCTCCTCAGAATCCATAGCCAAACTCAAAGCAAAGGCCAACTCAGAGTCCAACGCCACCAAAATCTCATCTTTCCAGTCCCTCTCCGCCCTTCTATGGCGGTCCATCACCAGTGCACGGCGTCTTCCTCCCAATCAGTCAACCAGATGCAGGTATCCTCCAAAACTTCGAACAATCCTCGAAATTTCCAATTCTTACAATGCGTTTCACATTAGATTTCCATATTTCTGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010143 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043170 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051179 GO:0071704 GO:0071840 GO:0090558 GO:0090626 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

332

Amino Acids

37.23

Weight (kDa)

7.78

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	9 - 305	1.2e-42	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	900
AccI	GTMKAC	1 cut(s)	312
AccII	CGCG	1 cut(s)	269
AccIII	TCCGGA	2 cut(s)	154, 661
AciI	CCGC	8 cut(s)	172, 182, 251, 262, 638, 652, 846, 859
AcoI	YGGCCR	2 cut(s)	259, 448
AcsI	RAATTY	1 cut(s)	942
AcyI	GRCGYC	2 cut(s)	458, 880
AfaI	GTAC	1 cut(s)	83
AfiI	CCNNNNNNNGG	6 cut(s)	178, 181, 257, 855, 876, 909
AgsI	TTSAA	1 cut(s)	562
AjiI	CACGTC	1 cut(s)	394
AluBI	AGCT	5 cut(s)	211, 353, 434, 487, 731
AluI	AGCT	5 cut(s)	211, 353, 434, 487, 731
Alw21I	GWGCWC	1 cut(s)	877
Alw26I	GTCTC	1 cut(s)	61
Alw44I	GTGCAC	1 cut(s)	873
Aor13HI	TCCGGA	2 cut(s)	154, 661
AoxI	GGCC	6 cut(s)	87, 133, 259, 448, 674, 795
ApaLI	GTGCAC	1 cut(s)	873
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	1 cut(s)	942
AspS9I	GGNCC	5 cut(s)	88, 570, 643, 674, 861
AsuC2I	CCSGG	2 cut(s)	330, 624
AsuHPI	GGTGA	3 cut(s)	490, 545, 859
AsuII	TTCGAA	2 cut(s)	726, 928
AvaII	GGWCC	3 cut(s)	570, 643, 861
BaeGI	GKGCMC	2 cut(s)	399, 877
BbsI	GAAGAC	1 cut(s)	875
Bbv12I	GWGCWC	1 cut(s)	877
BbvI	GCAGC	1 cut(s)	362
BccI	CCATC	3 cut(s)	530, 623, 872
BceAI	ACGGC	4 cut(s)	463, 471, 511, 893
BciVI	GTATCC	1 cut(s)	924
BcnI	CCSGG	2 cut(s)	330, 624
BcoDI	GTCTC	1 cut(s)	61
BfuAI	ACCTGC	1 cut(s)	900
BfuI	GTATCC	1 cut(s)	924
BisI	GCNGC	3 cut(s)	172, 262, 351
BlsI	GCNGC	3 cut(s)	173, 263, 352
Bme1390I	CCNGG	2 cut(s)	330, 624
Bme18I	GGWCC	3 cut(s)	570, 643, 861
BmgBI	CACGTC	1 cut(s)	394
BmgT120I	GGNCC	5 cut(s)	88, 570, 643, 674, 861
BmiI	GGNNCC	2 cut(s)	90, 334
BmrFI	CCNGG	2 cut(s)	330, 624
BmsI	GCATC	1 cut(s)	896
BpiI	GAAGAC	1 cut(s)	875
BpmI	CTGGAG	1 cut(s)	616
Bpu14I	TTCGAA	2 cut(s)	726, 928
BpuEI	CTTGAG	2 cut(s)	197, 632
BpuMI	CCSGG	2 cut(s)	330, 624
BsaHI	GRCGYC	2 cut(s)	458, 880
BsaJI	CCNNGG	5 cut(s)	162, 328, 399, 529, 622
BsaWI	WCCGGW	2 cut(s)	154, 661
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	6 cut(s)	178, 181, 257, 855, 876, 909
Bse118I	RCCGGY	2 cut(s)	257, 640
Bse1I	ACTGG	3 cut(s)	633, 835, 870
Bse3DI	GCAATG	1 cut(s)	461
BseAI	TCCGGA	2 cut(s)	154, 661
BseDI	CCNNGG	5 cut(s)	162, 328, 399, 529, 622
BseGI	GGATG	1 cut(s)	364
BseLI	CCNNNNNNNGG	6 cut(s)	178, 181, 257, 855, 876, 909
BseMI	GCAATG	1 cut(s)	461
BseMII	CTCAG	4 cut(s)	72, 754, 780, 816
BseNI	ACTGG	3 cut(s)	633, 835, 870
BseRI	GAGGAG	2 cut(s)	128, 754
BseSI	GKGCMC	2 cut(s)	399, 877
BseX3I	CGGCCG	1 cut(s)	259
BseXI	GCAGC	1 cut(s)	362
Bsh1236I	CGCG	1 cut(s)	269
Bsh1285I	CGRYCG	1 cut(s)	262
BshFI	GGCC	6 cut(s)	89, 135, 261, 450, 676, 797
BsiEI	CGRYCG	1 cut(s)	262
BsiHKAI	GWGCWC	1 cut(s)	877
BsiSI	CCGG	6 cut(s)	155, 258, 330, 624, 641, 662
BslFI	GGGAC	3 cut(s)	553, 605, 823
BslI	CCNNNNNNNGG	6 cut(s)	178, 181, 257, 855, 876, 909
BsmAI	GTCTC	1 cut(s)	61
BsmFI	GGGAC	3 cut(s)	553, 605, 823
BsnI	GGCC	6 cut(s)	89, 135, 261, 450, 676, 797
Bsp119I	TTCGAA	2 cut(s)	726, 928
Bsp1286I	GDGCHC	2 cut(s)	399, 877
Bsp13I	TCCGGA	2 cut(s)	154, 661
Bsp143I	GATC	1 cut(s)	421
Bsp19I	CCATGG	1 cut(s)	162
Bsp68I	TCGCGA	1 cut(s)	269
BspACI	CCGC	8 cut(s)	172, 182, 251, 262, 638, 652, 846, 859
BspANI	GGCC	6 cut(s)	89, 135, 261, 450, 676, 797
BspCNI	CTCAG	4 cut(s)	71, 753, 779, 815
BspEI	TCCGGA	2 cut(s)	154, 661
BspFNI	CGCG	1 cut(s)	269
BspLI	GGNNCC	2 cut(s)	90, 334
BspMI	ACCTGC	1 cut(s)	900
BspT104I	TTCGAA	2 cut(s)	726, 928
BsrDI	GCAATG	1 cut(s)	461
BsrFI	RCCGGY	2 cut(s)	257, 640
BsrI	ACTGG	3 cut(s)	633, 835, 870
BssAI	RCCGGY	2 cut(s)	257, 640
BssECI	CCNNGG	5 cut(s)	162, 328, 399, 529, 622
BssMI	GATC	1 cut(s)	421
BssNI	GRCGYC	2 cut(s)	458, 880
BssT1I	CCWWGG	3 cut(s)	162, 399, 529
Bst4CI	ACNGT	2 cut(s)	472, 668
BstACI	GRCGYC	2 cut(s)	458, 880
BstBI	TTCGAA	2 cut(s)	726, 928
BstC8I	GCNNGC	2 cut(s)	255, 259
BstDEI	CTNAG	4 cut(s)	58, 740, 766, 802
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	364
BstFNI	CGCG	1 cut(s)	269
BstKTI	GATC	1 cut(s)	424
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	421
BstMCI	CGRYCG	1 cut(s)	262
BstSCI	CCNGG	2 cut(s)	328, 622
BstSLI	GKGCMC	2 cut(s)	399, 877
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	1 cut(s)	362
BstV2I	GAAGAC	1 cut(s)	875
BstZI	CGGCCG	1 cut(s)	259
BsuI	GTATCC	1 cut(s)	924
BsuRI	GGCC	6 cut(s)	89, 135, 261, 450, 676, 797
BtgI	CCRYGG	1 cut(s)	162
BtrI	CACGTC	1 cut(s)	394
BtsCI	GGATG	1 cut(s)	364
BtsI	GCAGTG	1 cut(s)	523
BtsIMutI	CAGTG	2 cut(s)	523, 877
BtuMI	TCGCGA	1 cut(s)	269
BveI	ACCTGC	1 cut(s)	900
Cac8I	GCNNGC	2 cut(s)	255, 259
Cfr10I	RCCGGY	2 cut(s)	257, 640
Cfr13I	GGNCC	5 cut(s)	88, 570, 643, 674, 861
CseI	GACGC	3 cut(s)	4, 447, 869
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	5 cut(s)	106, 163, 517, 605, 671
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	4 cut(s)	58, 740, 766, 802
DpnI	GATC	1 cut(s)	423
DpnII	GATC	1 cut(s)	421
EaeI	YGGCCR	2 cut(s)	259, 448
EagI	CGGCCG	1 cut(s)	259
EciI	GGCGGA	3 cut(s)	197, 627, 835
EclXI	CGGCCG	1 cut(s)	259
Eco130I	CCWWGG	3 cut(s)	162, 399, 529
Eco147I	AGGCCT	1 cut(s)	135
Eco47I	GGWCC	3 cut(s)	570, 643, 861
Eco52I	CGGCCG	1 cut(s)	259
EcoT14I	CCWWGG	3 cut(s)	162, 399, 529
ErhI	CCWWGG	3 cut(s)	162, 399, 529
FaeI	CATG	5 cut(s)	109, 166, 520, 608, 674
FaqI	GGGAC	3 cut(s)	553, 605, 823
FatI	CATG	5 cut(s)	105, 162, 516, 604, 670
FauI	CCCGC	1 cut(s)	258
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	3 cut(s)	172, 262, 351
FokI	GGATG	1 cut(s)	371
Fsp4HI	GCNGC	3 cut(s)	172, 262, 351
GluI	GCNGC	3 cut(s)	172, 262, 351
GsuI	CTGGAG	1 cut(s)	616
HaeIII	GGCC	6 cut(s)	89, 135, 261, 450, 676, 797
HapII	CCGG	6 cut(s)	155, 258, 330, 624, 641, 662
HgaI	GACGC	3 cut(s)	4, 447, 869
Hin1I	GRCGYC	2 cut(s)	458, 880
Hin1II	CATG	5 cut(s)	109, 166, 520, 608, 674
HincII	GTYRAC	2 cut(s)	439, 900
HindII	GTYRAC	2 cut(s)	439, 900
HinfI	GANTC	7 cut(s)	65, 339, 520, 627, 723, 770, 806
HpaI	GTTAAC	1 cut(s)	439
HpaII	CCGG	6 cut(s)	155, 258, 330, 624, 641, 662
HphI	GGTGA	3 cut(s)	490, 545, 859
Hpy166II	GTNNAC	5 cut(s)	313, 439, 493, 875, 900
Hpy188I	TCNGA	5 cut(s)	61, 373, 743, 769, 805
Hpy188III	TCNNGA	7 cut(s)	127, 155, 268, 356, 425, 662, 734
Hpy8I	GTNNAC	5 cut(s)	313, 439, 493, 875, 900
Hpy99I	CGWCG	2 cut(s)	274, 449
HpyAV	CCTTC	1 cut(s)	860
HpyCH4III	ACNGT	2 cut(s)	472, 668
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	4 cut(s)	350, 604, 875, 909
HpyF3I	CTNAG	4 cut(s)	58, 740, 766, 802
HpySE526I	ACGT	1 cut(s)	393
Hsp92I	GRCGYC	2 cut(s)	458, 880
Hsp92II	CATG	5 cut(s)	109, 166, 520, 608, 674
Kpn2I	TCCGGA	2 cut(s)	154, 661
KroI	GCCGGC	1 cut(s)	257
KroNI	GCCGGC	1 cut(s)	259
KspAI	GTTAAC	1 cut(s)	439
Kzo9I	GATC	1 cut(s)	421
LmnI	GCTCC	3 cut(s)	332, 484, 736
Lsp1109I	GCAGC	1 cut(s)	362
LweI	GCATC	1 cut(s)	896
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	1 cut(s)	423
MboI	GATC	1 cut(s)	421
MboII	GAAGA	4 cut(s)	286, 293, 550, 875
MhlI	GDGCHC	2 cut(s)	399, 877
MluCI	AATT	3 cut(s)	193, 942, 949
MlyI	GAGTC	1 cut(s)	815
MmeI	TCCRAC	1 cut(s)	834
MroI	TCCGGA	2 cut(s)	154, 661
MroNI	GCCGGC	1 cut(s)	257
MseI	TTAA	1 cut(s)	438
MspI	CCGG	6 cut(s)	155, 258, 330, 624, 641, 662
MspR9I	CCNGG	2 cut(s)	330, 624
MvnI	CGCG	1 cut(s)	269
NaeI	GCCGGC	1 cut(s)	259
NciI	CCSGG	2 cut(s)	330, 624
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	1 cut(s)	421
NgoMIV	GCCGGC	1 cut(s)	257
NlaIII	CATG	5 cut(s)	109, 166, 520, 608, 674
NlaIV	GGNNCC	2 cut(s)	90, 334
NmuCI	GTSAC	1 cut(s)	478
NruI	TCGCGA	1 cut(s)	269
NspV	TTCGAA	2 cut(s)	726, 928
PceI	AGGCCT	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	2 cut(s)	723, 732
PdiI	GCCGGC	1 cut(s)	259
PfeI	GAWTC	6 cut(s)	65, 339, 520, 627, 723, 770
PkrI	GCNGC	3 cut(s)	173, 263, 352
PleI	GAGTC	1 cut(s)	814
PpsI	GAGTC	1 cut(s)	814
PspN4I	GGNNCC	2 cut(s)	90, 334
PspPI	GGNCC	5 cut(s)	88, 570, 643, 674, 861
RruI	TCGCGA	1 cut(s)	269
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	3 cut(s)	172, 262, 351
Sau3AI	GATC	1 cut(s)	421
Sau96I	GGNCC	5 cut(s)	88, 570, 643, 674, 861
SchI	GAGTC	1 cut(s)	815
ScrFI	CCNGG	2 cut(s)	330, 624
SduI	GDGCHC	2 cut(s)	399, 877
SfaNI	GCATC	1 cut(s)	896
SfuI	TTCGAA	2 cut(s)	726, 928
SinI	GGWCC	3 cut(s)	570, 643, 861
SmlI	CTYRAG	2 cut(s)	212, 647
SmoI	CTYRAG	2 cut(s)	212, 647
Sse9I	AATT	3 cut(s)	193, 942, 949
SseBI	AGGCCT	1 cut(s)	135
SsiI	CCGC	8 cut(s)	172, 182, 251, 262, 638, 652, 846, 859
StuI	AGGCCT	1 cut(s)	135
StyD4I	CCNGG	2 cut(s)	328, 622
StyI	CCWWGG	3 cut(s)	162, 399, 529
TaaI	ACNGT	2 cut(s)	472, 668
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	4 cut(s)	420, 726, 928, 939
TasI	AATT	3 cut(s)	193, 942, 949
TatI	WGTACW	1 cut(s)	81
TauI	GCSGC	2 cut(s)	174, 264
TfiI	GAWTC	6 cut(s)	65, 339, 520, 627, 723, 770
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	2 cut(s)	530, 877
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	6 cut(s)	17, 230, 331, 493, 533, 703
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	2 cut(s)	530, 877
VneI	GTGCAC	1 cut(s)	873
VpaK11BI	GGWCC	3 cut(s)	570, 643, 861
XapI	RAATTY	1 cut(s)	942
XmiI	GTMKAC	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.