pycom08g08440

B3 domain-containing protein At3g19184-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Reverse (-)
6765101 .. 6765562
462 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 285 bp
ATGGTGGCGCCCAAGTTATCGTACGAGGAGTCTCGCCAGCAGCGAATGGAGGAAAACAAGAAGAGAATGGAAGCTCTCAATCTGCCTATGCTTGCTCAAGCTCTTAAGAAAACCCCAAATTCCCCAAAACCCTCCCCTATGAAGCGCGCGAAAGCCCGCACGATGGAGAAGCAGCTCGTGGAGGTGAGGAGGTCCTCCCGGGTCGCAAATCTTCCGACCCCGGTTTACAAAGAAGTGGTAGGCTGTGGTGGAACGGGAGATGAGGACCAGAAGGTATTCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

95

Amino Acids

10.71

Weight (kDa)

9.88

Isoelectric Point (pI)

68.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 7
AccII CGCG 2 cut(s) 147, 149
AciI CCGC 1 cut(s) 157
AcsI RAATTY 1 cut(s) 118
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 163
AflII CTTAAG 1 cut(s) 104
AluBI AGCT 3 cut(s) 74, 101, 175
AluI AGCT 3 cut(s) 74, 101, 175
Alw26I GTCTC 1 cut(s) 36
Ama87I CYCGRG 1 cut(s) 198
ApeKI GCWGC 2 cut(s) 40, 172
ApoI RAATTY 1 cut(s) 118
Asp700I GAANNNNTTC 1 cut(s) 275
AspLEI GCGC 3 cut(s) 10, 147, 149
AspS9I GGNCC 2 cut(s) 192, 265
AsuC2I CCSGG 3 cut(s) 199, 200, 221
AsuHPI GGTGA 1 cut(s) 196
AvaI CYCGRG 1 cut(s) 198
AvaII GGWCC 2 cut(s) 192, 265
BanI GGYRCC 1 cut(s) 7
BarI GAAGNNNNNNTAC 1 cut(s) 263
BauI CACGAG 1 cut(s) 176
BbvI GCAGC 2 cut(s) 52, 184
BccI CCATC 1 cut(s) 157
BcnI CCSGG 3 cut(s) 199, 200, 221
BcoDI GTCTC 1 cut(s) 36
BfoI RGCGCY 1 cut(s) 11
BfrI CTTAAG 1 cut(s) 104
BisI GCNGC 2 cut(s) 41, 173
BlsI GCNGC 2 cut(s) 42, 174
Bme1390I CCNGG 3 cut(s) 199, 200, 221
Bme18I GGWCC 2 cut(s) 192, 265
BmeT110I CYCGRG 1 cut(s) 198
BmgT120I GGNCC 2 cut(s) 192, 265
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 3 cut(s) 199, 200, 221
BpuEI CTTGAG 1 cut(s) 81
BpuMI CCSGG 3 cut(s) 199, 200, 221
BsaHI GRCGYC 1 cut(s) 8
BsaJI CCNNGG 2 cut(s) 198, 219
Bsc4I CCNNNNNNNGG 1 cut(s) 163
BseDI CCNNGG 2 cut(s) 198, 219
BseLI CCNNNNNNNGG 1 cut(s) 163
BsePI GCGCGC 1 cut(s) 145
BseRI GAGGAG 2 cut(s) 41, 202
BseXI GCAGC 2 cut(s) 52, 184
Bsh1236I CGCG 2 cut(s) 147, 149
BshNI GGYRCC 1 cut(s) 7
BsiHKCI CYCGRG 1 cut(s) 198
BsiSI CCGG 2 cut(s) 199, 221
BsiWI CGTACG 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 1 cut(s) 36
BsoBI CYCGRG 1 cut(s) 198
BspACI CCGC 1 cut(s) 157
BspFNI CGCG 2 cut(s) 147, 149
BspLI GGNNCC 1 cut(s) 9
BspT107I GGYRCC 1 cut(s) 7
BspTI CTTAAG 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 198, 219
BssHII GCGCGC 1 cut(s) 145
BssNI GRCGYC 1 cut(s) 8
BssSI CACGAG 1 cut(s) 176
Bst2BI CACGAG 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 56
BstACI GRCGYC 1 cut(s) 8
BstAFI CTTAAG 1 cut(s) 104
BstC8I GCNNGC 4 cut(s) 38, 93, 147, 157
BstFNI CGCG 2 cut(s) 147, 149
BstH2I RGCGCY 1 cut(s) 11
BstHHI GCGC 3 cut(s) 10, 147, 149
BstMAI GTCTC 1 cut(s) 36
BstSCI CCNGG 3 cut(s) 197, 198, 219
BstUI CGCG 2 cut(s) 147, 149
BstV1I GCAGC 2 cut(s) 52, 184
Cac8I GCNNGC 4 cut(s) 38, 93, 147, 157
CfoI GCGC 3 cut(s) 10, 147, 149
Cfr13I GGNCC 2 cut(s) 192, 265
Cfr9I CCCGGG 1 cut(s) 198
Csp6I GTAC 1 cut(s) 22
CviJI RGCY 5 cut(s) 74, 101, 155, 175, 243
CviKI_1 RGCY 5 cut(s) 74, 101, 155, 175, 243
CviQI GTAC 1 cut(s) 22
DinI GGCGCC 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco47I GGWCC 2 cut(s) 192, 265
Eco88I CYCGRG 1 cut(s) 198
EcoO109I RGGNCCY 1 cut(s) 192
EgeI GGCGCC 1 cut(s) 9
EheI GGCGCC 1 cut(s) 9
FaiI YATR 2 cut(s) 89, 140
FauI CCCGC 1 cut(s) 164
Fnu4HI GCNGC 2 cut(s) 41, 173
Fsp4HI GCNGC 2 cut(s) 41, 173
GlaI GCGC 3 cut(s) 9, 146, 148
GluI GCNGC 2 cut(s) 41, 173
HaeII RGCGCY 1 cut(s) 11
HapII CCGG 2 cut(s) 199, 221
HhaI GCGC 3 cut(s) 10, 147, 149
Hin1I GRCGYC 1 cut(s) 8
Hin6I GCGC 3 cut(s) 8, 145, 147
HinP1I GCGC 3 cut(s) 8, 145, 147
HinfI GANTC 1 cut(s) 29
HpaII CCGG 2 cut(s) 199, 221
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 1 cut(s) 216
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 1 cut(s) 265
Hsp92I GRCGYC 1 cut(s) 8
HspAI GCGC 3 cut(s) 8, 145, 147
KasI GGCGCC 1 cut(s) 7
LpnPI CCDG 4 cut(s) 50, 212, 234, 281
Lsp1109I GCAGC 2 cut(s) 52, 184
MboII GAAGA 2 cut(s) 73, 203
MluCI AATT 1 cut(s) 118
Mly113I GGCGCC 1 cut(s) 8
MlyI GAGTC 1 cut(s) 38
MmeI TCCRAC 1 cut(s) 239
MnlI CCTC 8 cut(s) 19, 43, 142, 175, 180, 183, 205, 256
MroXI GAANNNNTTC 1 cut(s) 275
MseI TTAA 1 cut(s) 105
MspCI CTTAAG 1 cut(s) 104
MspI CCGG 2 cut(s) 199, 221
MspR9I CCNGG 3 cut(s) 199, 200, 221
MvnI CGCG 2 cut(s) 147, 149
NarI GGCGCC 1 cut(s) 8
NciI CCSGG 3 cut(s) 199, 200, 221
NlaIV GGNNCC 1 cut(s) 9
PauI GCGCGC 1 cut(s) 145
PcsI WCGNNNNNNNCGW 1 cut(s) 40
PdmI GAANNNNTTC 1 cut(s) 275
Pfl23II CGTACG 1 cut(s) 21
PkrI GCNGC 2 cut(s) 42, 174
PleI GAGTC 1 cut(s) 37
PluTI GGCGCC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 37
PpuMI RGGWCCY 1 cut(s) 192
Psp5II RGGWCCY 1 cut(s) 192
PspLI CGTACG 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 2 cut(s) 192, 265
PspPPI RGGWCCY 1 cut(s) 192
PteI GCGCGC 1 cut(s) 145
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 2 cut(s) 41, 173
Sau96I GGNCC 2 cut(s) 192, 265
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 3 cut(s) 199, 200, 221
SetI ASST 6 cut(s) 76, 103, 177, 186, 194, 276
SfoI GGCGCC 1 cut(s) 9
SinI GGWCC 2 cut(s) 192, 265
SmaI CCCGGG 1 cut(s) 200
SmlI CTYRAG 2 cut(s) 96, 104
SmoI CTYRAG 2 cut(s) 96, 104
Sse9I AATT 1 cut(s) 118
SsiI CCGC 1 cut(s) 157
SspDI GGCGCC 1 cut(s) 7
StyD4I CCNGG 3 cut(s) 197, 198, 219
TasI AATT 1 cut(s) 118
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TseI GCWGC 2 cut(s) 40, 172
TspDTI ATGAA 1 cut(s) 155
TspMI CCCGGG 1 cut(s) 198
Vha464I CTTAAG 1 cut(s) 104
VpaK11BI GGWCC 2 cut(s) 192, 265
XapI RAATTY 1 cut(s) 118
XmaI CCCGGG 1 cut(s) 198
XmnI GAANNNNTTC 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.