Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

6817296 .. 6817559

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGTACTGGTCCAGCCGGTGCAGCAAGAGAAGCTTCTCAGTGATGCCGGATTTGAAAAGCCATCGTGTTGGTCCTGTGCTTGGTACGGACTGGTCAAGCCATCTGGGTCACCTTACCTTGCTCCGGCAGAAGTGCGTCTCGGAGGAAATCCAGAACAACATCGTCGTTTTGGCCGATTACGTCGTCATCCCCGACGATCACTCCCACTCCCCCACCATCTCCGCCAAGGTCTGCTCCAATTCCCCTCTTTCCTTTAATTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031984 GO:0033036 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0098588 GO:0098791 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

88

Amino Acids

9.7

Weight (kDa)

7.8

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	222
AcoI	YGGCCR	1 cut(s)	171
AfaI	GTAC	2 cut(s)	5, 85
AfiI	CCNNNNNNNGG	2 cut(s)	80, 123
AgsI	TTSAA	1 cut(s)	55
AluBI	AGCT	1 cut(s)	33
AluI	AGCT	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	142
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	21
AspS9I	GGNCC	2 cut(s)	9, 71
AsuHPI	GGTGA	1 cut(s)	101
AvaII	GGWCC	2 cut(s)	9, 71
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	3 cut(s)	69, 108, 224
BcoDI	GTCTC	1 cut(s)	142
BisI	GCNGC	1 cut(s)	22
BlsI	GCNGC	1 cut(s)	23
Bme18I	GGWCC	2 cut(s)	9, 71
BmgT120I	GGNCC	2 cut(s)	9, 71
BmsI	GCATC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	225
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 191, 215, 221
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 123
Bse118I	RCCGGY	1 cut(s)	15
Bse1I	ACTGG	2 cut(s)	11, 95
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	2 cut(s)	80, 123
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	2 cut(s)	11, 95
BseXI	GCAGC	1 cut(s)	33
BsgI	GTGCAG	1 cut(s)	40
BshFI	GGCC	1 cut(s)	173
BsiSI	CCGG	3 cut(s)	16, 47, 124
BslI	CCNNNNNNNGG	2 cut(s)	80, 123
BsmAI	GTCTC	1 cut(s)	142
BsmBI	CGTCTC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	173
Bsp143I	GATC	1 cut(s)	196
BspACI	CCGC	1 cut(s)	222
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	15
BsrI	ACTGG	2 cut(s)	11, 95
BssAI	RCCGGY	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	1 cut(s)	196
BssT1I	CCWWGG	1 cut(s)	225
BstDEI	CTNAG	1 cut(s)	37
BstEII	GGTNACC	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	186
BstKTI	GATC	1 cut(s)	199
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 30
BstPI	GGTNACC	1 cut(s)	107
BstV1I	GCAGC	1 cut(s)	33
BstXI	CCANNNNNNTGG	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	173
BtsCI	GGATG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	45
Cfr10I	RCCGGY	1 cut(s)	15
Cfr13I	GGNCC	2 cut(s)	9, 71
CseI	GACGC	1 cut(s)	124
Csp6I	GTAC	2 cut(s)	4, 84
CviJI	RGCY	5 cut(s)	15, 33, 60, 99, 173
CviKI_1	RGCY	5 cut(s)	15, 33, 60, 99, 173
CviQI	GTAC	2 cut(s)	4, 84
DdeI	CTNAG	1 cut(s)	37
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
EaeI	YGGCCR	1 cut(s)	171
EciI	GGCGGA	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	225
Eco47I	GGWCC	2 cut(s)	9, 71
Eco91I	GGTNACC	1 cut(s)	107
EcoO65I	GGTNACC	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
Esp3I	CGTCTC	1 cut(s)	142
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
Fnu4HI	GCNGC	1 cut(s)	22
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	1 cut(s)	22
GluI	GCNGC	1 cut(s)	22
HaeIII	GGCC	1 cut(s)	173
HapII	CCGG	3 cut(s)	16, 47, 124
HgaI	GACGC	1 cut(s)	124
HindIII	AAGCTT	1 cut(s)	31
HpaII	CCGG	3 cut(s)	16, 47, 124
HphI	GGTGA	1 cut(s)	101
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	1 cut(s)	151
Hpy99I	CGWCG	3 cut(s)	167, 185, 197
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	1 cut(s)	21
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 30
HpyF3I	CTNAG	1 cut(s)	37
HpySE526I	ACGT	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	196
LmnI	GCTCC	2 cut(s)	126, 239
LpnPI	CCDG	8 cut(s)	25, 29, 60, 76, 87, 89, 137, 164
Lsp1109I	GCAGC	1 cut(s)	33
LweI	GCATC	1 cut(s)	33
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MluCI	AATT	2 cut(s)	238, 256
MnlI	CCTC	2 cut(s)	136, 255
MseI	TTAA	1 cut(s)	255
MspI	CCGG	3 cut(s)	16, 47, 124
MwoI	GCNNNNNNNGC	2 cut(s)	21, 30
NdeII	GATC	1 cut(s)	196
NmuCI	GTSAC	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	2 cut(s)	171, 189
PkrI	GCNGC	1 cut(s)	23
PspEI	GGTNACC	1 cut(s)	107
PspPI	GGNCC	2 cut(s)	9, 71
RsaI	GTAC	2 cut(s)	5, 85
RsaNI	GTAC	2 cut(s)	4, 84
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	1 cut(s)	22
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	2 cut(s)	9, 71
SetI	ASST	5 cut(s)	35, 114, 119, 183, 231
SfaNI	GCATC	1 cut(s)	33
SinI	GGWCC	2 cut(s)	9, 71
Sse9I	AATT	2 cut(s)	238, 256
SsiI	CCGC	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	225
TaiI	ACGT	1 cut(s)	183
TasI	AATT	2 cut(s)	238, 256
TatI	WGTACW	1 cut(s)	3
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	1 cut(s)	21
Tsp45I	GTSAC	1 cut(s)	107
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	45
VpaK11BI	GGWCC	2 cut(s)	9, 71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.