pycom08g08600

Vesicle transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Reverse (-)
6873678 .. 6874675
998 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 249 bp
ATGGTTGGATTGGCTAGACAGCTCAAAGAGAGTAGTCTCATGATGAGTCACTCCTTGGAAAACACTGAAAAAATACTTGATTCTACAGAGAAGGCTGTTGAAAGTAGCTTGGCAAGCACTGGTCACGCCACTACACGGGCAGCAGGTATATACTCGAGGACGTCCAAGACTACTTGTTTCACATGGCTTCTGATGTTTGTCATGACATGTGTATTTATCATGGTGGTTCTTTTAATTCGCGTAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
Use1

Protein Analysis

83

Amino Acids

9.08

Weight (kDa)

8.77

Isoelectric Point (pI)

29.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Use1 PF09753 1 - 82 5.7e-30 Membrane fusion protein Use1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 164
Acc36I ACCTGC 1 cut(s) 134
AccII CGCG 1 cut(s) 240
AcyI GRCGYC 1 cut(s) 161
AfiI CCNNNNNNNGG 1 cut(s) 135
AflIII ACRYGT 1 cut(s) 206
AgsI TTSAA 1 cut(s) 101
AluBI AGCT 2 cut(s) 22, 108
AluI AGCT 2 cut(s) 22, 108
Alw26I GTCTC 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 154
ApeKI GCWGC 1 cut(s) 140
AvaI CYCGRG 1 cut(s) 154
BbvI GCAGC 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 1 cut(s) 15
BfmI CTRYAG 1 cut(s) 84
BfuAI ACCTGC 1 cut(s) 134
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
BmeT110I CYCGRG 1 cut(s) 154
BsaHI GRCGYC 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 54
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 54
BseLI CCNNNNNNNGG 1 cut(s) 135
BseNI ACTGG 1 cut(s) 124
BseXI GCAGC 1 cut(s) 152
Bsh1236I CGCG 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 135
BsmAI GTCTC 1 cut(s) 41
BsoBI CYCGRG 1 cut(s) 154
BspFNI CGCG 1 cut(s) 240
BspHI TCATGA 2 cut(s) 39, 201
BspMI ACCTGC 1 cut(s) 134
BsrI ACTGG 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 54
BssNI GRCGYC 1 cut(s) 161
BssT1I CCWWGG 1 cut(s) 54
BstACI GRCGYC 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 115
BstFNI CGCG 1 cut(s) 240
BstMAI GTCTC 1 cut(s) 41
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstNSI RCATGY 1 cut(s) 210
BstSFI CTRYAG 1 cut(s) 84
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 152
BtsIMutI CAGTG 2 cut(s) 63, 117
BveI ACCTGC 1 cut(s) 134
Cac8I GCNNGC 1 cut(s) 115
CciI TCATGA 2 cut(s) 39, 201
CviAII CATG 5 cut(s) 40, 183, 202, 207, 220
CviJI RGCY 5 cut(s) 14, 22, 95, 108, 187
CviKI_1 RGCY 5 cut(s) 14, 22, 95, 108, 187
Eco130I CCWWGG 1 cut(s) 54
Eco88I CYCGRG 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 5 cut(s) 43, 186, 205, 210, 223
FaiI YATR 7 cut(s) 41, 149, 151, 184, 203, 208, 221
FatI CATG 5 cut(s) 39, 182, 201, 206, 219
Fnu4HI GCNGC 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 1 cut(s) 15
GluI GCNGC 1 cut(s) 141
Hin1I GRCGYC 1 cut(s) 161
Hin1II CATG 5 cut(s) 43, 186, 205, 210, 223
HinfI GANTC 2 cut(s) 46, 80
Hpy188I TCNGA 1 cut(s) 192
Hpy188III TCNNGA 2 cut(s) 40, 202
HpyAV CCTTC 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
HpySE526I ACGT 1 cut(s) 161
Hsp92I GRCGYC 1 cut(s) 161
Hsp92II CATG 5 cut(s) 43, 186, 205, 210, 223
LpnPI CCDG 2 cut(s) 105, 129
Lsp1109I GCAGC 1 cut(s) 152
MaeI CTAG 1 cut(s) 15
MaeII ACGT 1 cut(s) 161
MaeIII GTNAC 3 cut(s) 47, 122, 241
MluCI AATT 1 cut(s) 234
MlyI GAGTC 1 cut(s) 55
MnlI CCTC 1 cut(s) 150
MseI TTAA 2 cut(s) 233, 247
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 1 cut(s) 114
NlaIII CATG 5 cut(s) 43, 186, 205, 210, 223
NmuCI GTSAC 2 cut(s) 47, 122
NspI RCATGY 1 cut(s) 210
PaeR7I CTCGAG 1 cut(s) 154
PagI TCATGA 2 cut(s) 39, 201
PciI ACATGT 1 cut(s) 206
PfeI GAWTC 1 cut(s) 80
PkrI GCNGC 1 cut(s) 142
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
PscI ACATGT 1 cut(s) 206
PspXI VCTCGAGB 1 cut(s) 154
SaqAI TTAA 2 cut(s) 233, 247
SatI GCNGC 1 cut(s) 141
SchI GAGTC 1 cut(s) 55
SetI ASST 4 cut(s) 24, 110, 148, 164
SfcI CTRYAG 1 cut(s) 84
Sfr274I CTCGAG 1 cut(s) 154
SlaI CTCGAG 1 cut(s) 154
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
Sse9I AATT 1 cut(s) 234
SspMI CTAG 1 cut(s) 15
StyI CCWWGG 1 cut(s) 54
TaiI ACGT 1 cut(s) 164
TaqI TCGA 1 cut(s) 155
TasI AATT 1 cut(s) 234
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 2 cut(s) 233, 247
Tru9I TTAA 2 cut(s) 233, 247
TscAI CASTG 2 cut(s) 70, 124
TseFI GTSAC 2 cut(s) 47, 122
TseI GCWGC 1 cut(s) 140
Tsp45I GTSAC 2 cut(s) 47, 122
TspRI CASTG 2 cut(s) 70, 124
XceI RCATGY 1 cut(s) 210
XhoI CTCGAG 1 cut(s) 154
XspI CTAG 1 cut(s) 15
ZraI GACGTC 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.