pycom08g08830

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Forward (+)
7144351 .. 7145475
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 297 bp
ATGAACACCAGAGTGAGGGCAAGGCTGCAGTCTATGAAGCCACTCGAGAAGAATAAAAAAGAAAAGGTAGAAATGCAAGGGAGTGAGATTAAGGAAACCAGAAAAGCAATCAGCAATGGAAGAGCTTCGAGCAGAGAGAGGAAATTGGCTTTGCAACAAGATGTTGATAAGTTGAAGAAGAAGCTTAGACATGAAGAGAATGTACACAGAGCTTTGCAGAGGGCATTTACAAGACCCTTGGGAGCTCTGCCTCGTCTGCCTCCTTATCTGCCTCCTTATAGACGTTGGAGCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF547 Lzipper-MIP1

Protein Analysis

99

Amino Acids

11.62

Weight (kDa)

11.18

Isoelectric Point (pI)

54.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lzipper-MIP1 PF14389 44 - 92 4.2e-11 Leucine-zipper of ternary complex factor MIP1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 15
AgsI TTSAA 1 cut(s) 175
AleI CACNNNNGTG 1 cut(s) 11
AluBI AGCT 5 cut(s) 125, 184, 212, 245, 291
AluI AGCT 5 cut(s) 125, 184, 212, 245, 291
Alw21I GWGCWC 1 cut(s) 247
Ama87I CYCGRG 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 25
Asp700I GAANNNNTTC 1 cut(s) 124
AvaI CYCGRG 1 cut(s) 44
BanII GRGCYC 1 cut(s) 247
BarI GAAGNNNNNNTAC 2 cut(s) 186, 218
Bbv12I GWGCWC 1 cut(s) 247
BbvI GCAGC 1 cut(s) 12
BfaI CTAG 1 cut(s) 295
BfmI CTRYAG 1 cut(s) 26
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
BmeT110I CYCGRG 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 237
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse3DI GCAATG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMI GCAATG 1 cut(s) 121
BseXI GCAGC 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 247
BsiHKCI CYCGRG 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 15
BsoBI CYCGRG 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 247
Bsp1407I TGTACA 1 cut(s) 202
BspMAI CTGCAG 1 cut(s) 30
BspQI GCTCTTC 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 121
BsrGI TGTACA 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 237
BssT1I CCWWGG 1 cut(s) 237
Bst6I CTCTTC 2 cut(s) 115, 189
BstAUI TGTACA 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 185
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstSFI CTRYAG 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 12
Csp6I GTAC 1 cut(s) 203
CviAII CATG 1 cut(s) 191
CviJI RGCY 8 cut(s) 25, 40, 125, 149, 184, 212, 245, 291
CviKI_1 RGCY 8 cut(s) 25, 40, 125, 149, 184, 212, 245, 291
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 1 cut(s) 185
Eam1104I CTCTTC 2 cut(s) 115, 189
EarI CTCTTC 2 cut(s) 115, 189
Ecl136II GAGCTC 1 cut(s) 245
Eco130I CCWWGG 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 247
Eco53kI GAGCTC 1 cut(s) 245
Eco88I CYCGRG 1 cut(s) 44
EcoICRI GAGCTC 1 cut(s) 245
EcoT14I CCWWGG 1 cut(s) 237
EcoT38I GRGCYC 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 1 cut(s) 194
FaiI YATR 3 cut(s) 35, 192, 279
FatI CATG 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 26
FriOI GRGCYC 1 cut(s) 247
Fsp4HI GCNGC 1 cut(s) 26
FspBI CTAG 1 cut(s) 295
GluI GCNGC 1 cut(s) 26
Hin1II CATG 1 cut(s) 194
HindIII AAGCTT 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 205
Hpy188III TCNNGA 1 cut(s) 46
Hpy8I GTNNAC 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 4 cut(s) 28, 76, 154, 217
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
HpyF3I CTNAG 1 cut(s) 185
HpySE526I ACGT 1 cut(s) 283
Hsp92II CATG 1 cut(s) 194
LguI GCTCTTC 1 cut(s) 115
LmnI GCTCC 2 cut(s) 242, 288
LpnPI CCDG 2 cut(s) 22, 112
Lsp1109I GCAGC 1 cut(s) 12
MaeI CTAG 1 cut(s) 295
MaeII ACGT 1 cut(s) 283
MboII GAAGA 5 cut(s) 61, 132, 187, 190, 206
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 266
MnlI CCTC 6 cut(s) 9, 132, 213, 261, 270, 282
MroXI GAANNNNTTC 1 cut(s) 124
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 256
NlaIII CATG 1 cut(s) 194
OliI CACNNNNGTG 1 cut(s) 11
PaeR7I CTCGAG 1 cut(s) 44
PciSI GCTCTTC 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 124
PkrI GCNGC 1 cut(s) 27
Psp124BI GAGCTC 1 cut(s) 247
PstI CTGCAG 1 cut(s) 30
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 11
SacI GAGCTC 1 cut(s) 247
SapI GCTCTTC 1 cut(s) 115
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 1 cut(s) 26
SduI GDGCHC 1 cut(s) 247
SetI ASST 7 cut(s) 69, 127, 186, 214, 247, 286, 293
SfcI CTRYAG 1 cut(s) 26
Sfr274I CTCGAG 1 cut(s) 44
SlaI CTCGAG 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 11
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 1 cut(s) 143
SspMI CTAG 1 cut(s) 295
SstI GAGCTC 1 cut(s) 247
StyI CCWWGG 1 cut(s) 237
TaiI ACGT 1 cut(s) 286
TaqI TCGA 2 cut(s) 45, 128
TasI AATT 1 cut(s) 143
TatI WGTACW 1 cut(s) 202
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TseI GCWGC 1 cut(s) 25
TspDTI ATGAA 3 cut(s) 17, 50, 207
XhoI CTCGAG 1 cut(s) 44
XmnI GAANNNNTTC 1 cut(s) 124
XspI CTAG 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.