Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

7538591 .. 7539523

Gene Structure 933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGCTTATGGGAATGCTTTTGCGTGTTAGCATAGCACGTCAGGTGACCTTGAGAGTAGTTCTTGCTGCTAAAGTTTTCAAGGAAGAATATGAAAACCAGCGAAAGTGGATGCTTTCGGGAAAAACTGTAAGGCCCGGAGATCAGATTTTTCCATTAAAGCTTGTGCTGACGAGTGCTATGTCGCGAGTGGAAGACTTTGTCAGAAAGCTGTTTGGCAACCCTCCGATCCTAGAAGTTCAAACCAGACAATTTAAGGTATGTTACTTCGAAAAGAGAATGGACACAGAAAAGCCTTATGTTAAACAAGCATATCAAAAGGTCTTGAAAATTCACAAGAGGCTATACGTAGAGTCCTTGTGTCGCAAGCTAACCCGAGCTTCGGAACTGATTATGAAAAGATTACTTTCTGTTGAGGGAACAAATATTGAACAGATATTTGTGAAGCATTTGAAAAAGATCAGTCAATCTCGTGTATTTAACAACACCGCGAAGGAAGGCGAAAGACTTCTTGTTGTGGCCACTAATGTTGCTGAAACCTCCCTAACTATAGATGGGATAAAGTATGTTGTCGATGCAGAAAAAGAGAAAGATAAGGACTACAATTCGTCAAATGGCATGGAAACATATAAAATACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

213

Amino Acids

24.66

Weight (kDa)

9.79

Isoelectric Point (pI)

27.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	184, 488
AciI	CCGC	1 cut(s)	486
AclWI	GGATC	1 cut(s)	220
AcoI	YGGCCR	1 cut(s)	516
AcsI	RAATTY	1 cut(s)	327
AfiI	CCNNNNNNNGG	1 cut(s)	379
AgsI	TTSAA	5 cut(s)	79, 239, 325, 428, 451
AjiI	CACGTC	1 cut(s)	38
AluBI	AGCT	4 cut(s)	160, 208, 367, 377
AluI	AGCT	4 cut(s)	160, 208, 367, 377
AlwI	GGATC	1 cut(s)	220
Ama87I	CYCGRG	1 cut(s)	372
AoxI	GGCC	2 cut(s)	131, 516
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	327
Asp700I	GAANNNNTTC	1 cut(s)	504
AspS9I	GGNCC	1 cut(s)	132
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	55
AsuII	TTCGAA	1 cut(s)	267
AvaI	CYCGRG	1 cut(s)	372
BalI	TGGCCA	1 cut(s)	518
BauI	CACGAG	1 cut(s)	468
BbsI	GAAGAC	1 cut(s)	198
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	1 cut(s)	545
BcnI	CCSGG	1 cut(s)	135
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	546
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme1390I	CCNGG	1 cut(s)	135
BmeT110I	CYCGRG	1 cut(s)	372
BmgBI	CACGTC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	132
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	2 cut(s)	99, 562
BpiI	GAAGAC	1 cut(s)	198
Bpu14I	TTCGAA	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseXI	GCAGC	1 cut(s)	52
Bsh1236I	CGCG	2 cut(s)	184, 488
BshFI	GGCC	2 cut(s)	133, 518
BsiHKCI	CYCGRG	1 cut(s)	372
BsiSI	CCGG	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmI	GAATGC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	133, 518
BsoBI	CYCGRG	1 cut(s)	372
Bsp119I	TTCGAA	1 cut(s)	267
Bsp143I	GATC	3 cut(s)	139, 225, 456
Bsp68I	TCGCGA	1 cut(s)	184
BspACI	CCGC	1 cut(s)	486
BspANI	GGCC	2 cut(s)	133, 518
BspFNI	CGCG	2 cut(s)	184, 488
BspPI	GGATC	1 cut(s)	220
BspT104I	TTCGAA	1 cut(s)	267
BssMI	GATC	3 cut(s)	139, 225, 456
BssSI	CACGAG	1 cut(s)	468
Bst2BI	CACGAG	1 cut(s)	468
Bst4CI	ACNGT	2 cut(s)	127, 636
BstBAI	YACGTR	1 cut(s)	346
BstBI	TTCGAA	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	365
BstEII	GGTNACC	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	114
BstFNI	CGCG	2 cut(s)	184, 488
BstKTI	GATC	3 cut(s)	142, 228, 459
BstMBI	GATC	3 cut(s)	139, 225, 456
BstPI	GGTNACC	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	133
BstSFI	CTRYAG	1 cut(s)	546
BstSNI	TACGTA	1 cut(s)	346
BstUI	CGCG	2 cut(s)	184, 488
BstV1I	GCAGC	1 cut(s)	52
BstV2I	GAAGAC	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	133, 518
BtrI	CACGTC	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	114
BtuMI	TCGCGA	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	365
Cfr13I	GGNCC	1 cut(s)	132
CspCI	CAANNNNNGTGG	2 cut(s)	508, 543
CviAII	CATG	1 cut(s)	616
CviJI	RGCY	8 cut(s)	133, 160, 208, 292, 340, 367, 377, 518
CviKI_1	RGCY	8 cut(s)	133, 160, 208, 292, 340, 367, 377, 518
DpnI	GATC	3 cut(s)	141, 227, 458
DpnII	GATC	3 cut(s)	139, 225, 456
EaeI	YGGCCR	1 cut(s)	516
Eco105I	TACGTA	1 cut(s)	346
Eco88I	CYCGRG	1 cut(s)	372
Eco91I	GGTNACC	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	43
FaeI	CATG	1 cut(s)	619
FatI	CATG	1 cut(s)	615
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	1 cut(s)	121
Fsp4HI	GCNGC	1 cut(s)	66
FspBI	CTAG	1 cut(s)	230
GluI	GCNGC	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	133, 518
HapII	CCGG	1 cut(s)	135
Hin1II	CATG	1 cut(s)	619
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	1 cut(s)	350
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	1 cut(s)	55
Hpy188I	TCNGA	4 cut(s)	144, 203, 225, 382
Hpy188III	TCNNGA	3 cut(s)	117, 183, 322
HpyAV	CCTTC	2 cut(s)	484, 488
HpyCH4III	ACNGT	2 cut(s)	127, 636
HpyCH4IV	ACGT	2 cut(s)	37, 345
HpyCH4V	TGCA	1 cut(s)	575
HpySE526I	ACGT	2 cut(s)	37, 345
Hsp92II	CATG	1 cut(s)	619
Kzo9I	GATC	3 cut(s)	139, 225, 456
LpnPI	CCDG	4 cut(s)	26, 110, 148, 256
Lsp1109I	GCAGC	1 cut(s)	52
LweI	GCATC	2 cut(s)	99, 562
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	2 cut(s)	37, 345
MaeIII	GTNAC	2 cut(s)	43, 260
MalI	GATC	3 cut(s)	141, 227, 458
MboI	GATC	3 cut(s)	139, 225, 456
MboII	GAAGA	2 cut(s)	95, 203
MlsI	TGGCCA	1 cut(s)	518
MluCI	AATT	3 cut(s)	248, 327, 601
MluNI	TGGCCA	1 cut(s)	518
MlyI	GAGTC	1 cut(s)	359
MnlI	CCTC	4 cut(s)	231, 330, 406, 547
Mox20I	TGGCCA	1 cut(s)	518
MroXI	GAANNNNTTC	1 cut(s)	504
MscI	TGGCCA	1 cut(s)	518
MseI	TTAA	4 cut(s)	155, 252, 300, 477
Msp20I	TGGCCA	1 cut(s)	518
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	135
Mva1269I	GAATGC	1 cut(s)	18
MvnI	CGCG	2 cut(s)	184, 488
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	3 cut(s)	139, 225, 456
NlaIII	CATG	1 cut(s)	619
NmuCI	GTSAC	1 cut(s)	43
NruI	TCGCGA	1 cut(s)	184
NspV	TTCGAA	1 cut(s)	267
PctI	GAATGC	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	504
PflFI	GACNNNGTC	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	67
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
Ppu21I	YACGTR	1 cut(s)	346
PspEI	GGTNACC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	132
PsyI	GACNNNGTC	1 cut(s)	197
RruI	TCGCGA	1 cut(s)	184
SaqAI	TTAA	4 cut(s)	155, 252, 300, 477
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	3 cut(s)	139, 225, 456
Sau96I	GGNCC	1 cut(s)	132
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	135
SfaNI	GCATC	2 cut(s)	99, 562
SfcI	CTRYAG	1 cut(s)	546
SfuI	TTCGAA	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
SnaBI	TACGTA	1 cut(s)	346
Sse9I	AATT	3 cut(s)	248, 327, 601
SsiI	CCGC	1 cut(s)	486
SspI	AATATT	1 cut(s)	424
SspMI	CTAG	1 cut(s)	230
StyD4I	CCNGG	1 cut(s)	133
TaaI	ACNGT	2 cut(s)	127, 636
TaiI	ACGT	2 cut(s)	40, 348
TaqI	TCGA	2 cut(s)	267, 570
TasI	AATT	3 cut(s)	248, 327, 601
Tru1I	TTAA	4 cut(s)	155, 252, 300, 477
Tru9I	TTAA	4 cut(s)	155, 252, 300, 477
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	2 cut(s)	105, 407
Tth111I	GACNNNGTC	1 cut(s)	197
XapI	RAATTY	1 cut(s)	327
XmnI	GAANNNNTTC	1 cut(s)	504
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.