Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

8018153 .. 8020837

Gene Structure 2685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGATGGGGTGATGTTGGGTCTAAGCAGAAGTCTACTGCAGGCTGGTTGGATAGAGTGGGATGGTGAAAGATTTGAGTTTGAAAATGCCCCTTCTTATTCTGAAAAGAATTGGGGTGGAGCATTCCCAAGAAAATGGTTCTGGGTTCAGTGTAATGTTTTTGAAGGCGCTACTGGAGAAGTTGCTCTGACATCAGGCGGTGGTTTGCGGCAACTACCTGGATTAACAGAATCTTTTGAAAACGCTGCTTTGATTGGAGTTCACTATGGTGGAAAGTTTTATGAATTTGTACCATGGAATGGTGTTGTTAGTTGGGAAATTGCTCCTTGGGGTTACTGGTCCATTGCTGCAGAGAATGAAACACACATGGTTGAATTAGAGGCAACAACAGAGGATCCTGGTACAACTTTGTGTGCTCCAACATCAGAAGCTGGACTTGCTCCAGCTTGTAAAGATACTTGCTTCGGTGATCTAAAATTAAAAATGTGGGAACGAAGATATGATGGTAACAAGGGGAAGATGATATTGGATGTTTCAAGTAACATGGCCGCAGTAGAAGTTGGAGGAGGACCATGGTTCAGTACTTGGAAGGGCAAAACTACAACACCCGAGCTCCTTAGCCGGGCTCTCAGAGTTCCCGTTGATGTGGAAGGGTTATACAATCTGGTTCCATTATTCAAACCCCCTGGTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006720 GO:0006721 GO:0006725 GO:0006766 GO:0006775 GO:0006778 GO:0006807 GO:0006810 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008643 GO:0009058 GO:0009110 GO:0009266 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009706 GO:0009915 GO:0009941 GO:0009975 GO:0009976 GO:0009987 GO:0010189 GO:0010232 GO:0010233 GO:0010287 GO:0015766 GO:0015770 GO:0015772 GO:0015994 GO:0016020 GO:0016108 GO:0016116 GO:0016122 GO:0018130 GO:0019752 GO:0019866 GO:0031090 GO:0031347 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032787 GO:0033013 GO:0042170 GO:0042360 GO:0042362 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051186 GO:0051234 GO:0065007 GO:0071702 GO:0071704 GO:0080134 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Tocopherol_cycl

Protein Analysis

232

Amino Acids

25.45

Weight (kDa)

4.77

Isoelectric Point (pI)

41.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tocopherol_cycl	PF14249	14 - 189	9.9e-75	Tocopherol cyclase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	299
AccI	GTMKAC	1 cut(s)	34
AciI	CCGC	3 cut(s)	198, 208, 549
AclWI	GGATC	2 cut(s)	389, 402
AcoI	YGGCCR	1 cut(s)	546
AcsI	RAATTY	1 cut(s)	284
AfaI	GTAC	3 cut(s)	291, 403, 583
AfiI	CCNNNNNNNGG	2 cut(s)	299, 622
AgsI	TTSAA	6 cut(s)	83, 164, 239, 374, 537, 679
AjnI	CCWGG	3 cut(s)	217, 397, 685
AjuI	GAANNNNNNNTTGG	2 cut(s)	509, 541
AleI	CACNNNNGTG	1 cut(s)	267
AluBI	AGCT	3 cut(s)	431, 446, 613
AluI	AGCT	3 cut(s)	431, 446, 613
Alw21I	GWGCWC	2 cut(s)	418, 615
AlwI	GGATC	2 cut(s)	389, 402
AlwNI	CAGNNNCTG	1 cut(s)	431
Ama87I	CYCGRG	1 cut(s)	608
AoxI	GGCC	1 cut(s)	546
ApeKI	GCWGC	2 cut(s)	245, 347
ApoI	RAATTY	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	2 cut(s)	339, 569
AsuC2I	CCSGG	1 cut(s)	623
AsuHPI	GGTGA	3 cut(s)	22, 77, 479
AvaI	CYCGRG	1 cut(s)	608
AvaII	GGWCC	2 cut(s)	339, 569
BamHI	GGATCC	1 cut(s)	394
BanII	GRGCYC	2 cut(s)	615, 628
Bbv12I	GWGCWC	2 cut(s)	418, 615
BbvI	GCAGC	2 cut(s)	232, 334
BccI	CCATC	2 cut(s)	56, 497
BciT130I	CCWGG	3 cut(s)	219, 399, 687
BcnI	CCSGG	1 cut(s)	623
BfmI	CTRYAG	3 cut(s)	38, 348, 692
BfoI	RGCGCY	1 cut(s)	171
BisI	GCNGC	4 cut(s)	209, 246, 348, 549
BlsI	GCNGC	4 cut(s)	210, 247, 349, 550
BmcAI	AGTACT	1 cut(s)	583
Bme1390I	CCNGG	4 cut(s)	219, 399, 623, 687
Bme18I	GGWCC	2 cut(s)	339, 569
BmeT110I	CYCGRG	1 cut(s)	608
BmgT120I	GGNCC	2 cut(s)	339, 569
BmiI	GGNNCC	2 cut(s)	396, 669
BmrFI	CCNGG	4 cut(s)	219, 399, 623, 687
BpmI	CTGGAG	2 cut(s)	195, 426
Bpu10I	CCTNAGC	1 cut(s)	617
BpuMI	CCSGG	1 cut(s)	623
BsaJI	CCNNGG	4 cut(s)	293, 326, 572, 685
BsaXI	ACNNNNNCTCC	2 cut(s)	597, 627
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 622
Bse1I	ACTGG	2 cut(s)	178, 341
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	3 cut(s)	219, 399, 687
BseDI	CCNNGG	4 cut(s)	293, 326, 572, 685
BseGI	GGATG	3 cut(s)	10, 67, 535
BseLI	CCNNNNNNNGG	2 cut(s)	299, 622
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	643
BseNI	ACTGG	2 cut(s)	178, 341
BseRI	GAGGAG	1 cut(s)	579
BseXI	GCAGC	2 cut(s)	232, 334
BshFI	GGCC	1 cut(s)	548
BsiHKAI	GWGCWC	2 cut(s)	418, 615
BsiHKCI	CYCGRG	1 cut(s)	608
BsiSI	CCGG	1 cut(s)	622
BslI	CCNNNNNNNGG	2 cut(s)	299, 622
BsmI	GAATGC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	548
BsoBI	CYCGRG	1 cut(s)	608
Bsp1286I	GDGCHC	3 cut(s)	418, 615, 628
Bsp143I	GATC	2 cut(s)	394, 469
Bsp19I	CCATGG	2 cut(s)	293, 572
BspACI	CCGC	3 cut(s)	198, 208, 549
BspANI	GGCC	1 cut(s)	548
BspCNI	CTCAG	1 cut(s)	642
BspLI	GGNNCC	2 cut(s)	396, 669
BspMAI	CTGCAG	2 cut(s)	42, 352
BspPI	GGATC	2 cut(s)	389, 402
BsrDI	GCAATG	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	178, 341
BssECI	CCNNGG	4 cut(s)	293, 326, 572, 685
BssMI	GATC	2 cut(s)	394, 469
BssT1I	CCWWGG	3 cut(s)	293, 326, 572
Bst2UI	CCWGG	3 cut(s)	219, 399, 687
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	3 cut(s)	23, 617, 629
BstDSI	CCRYGG	2 cut(s)	293, 572
BstF5I	GGATG	3 cut(s)	10, 67, 535
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	2 cut(s)	397, 472
BstMBI	GATC	2 cut(s)	394, 469
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNI	CCWGG	3 cut(s)	219, 399, 687
BstSCI	CCNGG	4 cut(s)	217, 397, 621, 685
BstSFI	CTRYAG	3 cut(s)	38, 348, 692
BstV1I	GCAGC	2 cut(s)	232, 334
BstX2I	RGATCY	1 cut(s)	394
BstXI	CCANNNNNNTGG	1 cut(s)	135
BstYI	RGATCY	1 cut(s)	394
BsuRI	GGCC	1 cut(s)	548
BtgI	CCRYGG	2 cut(s)	293, 572
BtsCI	GGATG	3 cut(s)	10, 67, 535
BtsIMutI	CAGTG	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	42
CaiI	CAGNNNCTG	1 cut(s)	431
CfoI	GCGC	1 cut(s)	170
Cfr13I	GGNCC	2 cut(s)	339, 569
Csp6I	GTAC	3 cut(s)	290, 402, 582
CviAII	CATG	4 cut(s)	294, 367, 544, 573
CviJI	RGCY	7 cut(s)	44, 431, 446, 548, 613, 621, 626
CviKI_1	RGCY	7 cut(s)	44, 431, 446, 548, 613, 621, 626
CviQI	GTAC	3 cut(s)	290, 402, 582
DdeI	CTNAG	3 cut(s)	23, 617, 629
DpnI	GATC	2 cut(s)	396, 471
DpnII	GATC	2 cut(s)	394, 469
EaeI	YGGCCR	1 cut(s)	546
Ecl136II	GAGCTC	1 cut(s)	613
Eco130I	CCWWGG	3 cut(s)	293, 326, 572
Eco24I	GRGCYC	2 cut(s)	615, 628
Eco47I	GGWCC	2 cut(s)	339, 569
Eco53kI	GAGCTC	1 cut(s)	613
Eco88I	CYCGRG	1 cut(s)	608
EcoICRI	GAGCTC	1 cut(s)	613
EcoRII	CCWGG	3 cut(s)	217, 397, 685
EcoT14I	CCWWGG	3 cut(s)	293, 326, 572
EcoT38I	GRGCYC	2 cut(s)	615, 628
ErhI	CCWWGG	3 cut(s)	293, 326, 572
FaeI	CATG	4 cut(s)	297, 370, 547, 576
FaiI	YATR	8 cut(s)	267, 282, 295, 368, 501, 545, 574, 658
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FatI	CATG	4 cut(s)	293, 366, 543, 572
FblI	GTMKAC	1 cut(s)	34
Fnu4HI	GCNGC	4 cut(s)	209, 246, 348, 549
FokI	GGATG	3 cut(s)	17, 74, 542
FriOI	GRGCYC	2 cut(s)	615, 628
Fsp4HI	GCNGC	4 cut(s)	209, 246, 348, 549
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	4 cut(s)	209, 246, 348, 549
GsuI	CTGGAG	2 cut(s)	195, 426
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	548
HapII	CCGG	1 cut(s)	622
HhaI	GCGC	1 cut(s)	170
Hin1II	CATG	4 cut(s)	297, 370, 547, 576
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HinfI	GANTC	1 cut(s)	230
HpaII	CCGG	1 cut(s)	622
HphI	GGTGA	3 cut(s)	22, 77, 479
Hpy166II	GTNNAC	2 cut(s)	35, 262
Hpy188I	TCNGA	4 cut(s)	103, 189, 427, 632
Hpy8I	GTNNAC	2 cut(s)	35, 262
HpyAV	CCTTC	4 cut(s)	102, 158, 583, 644
HpyCH4V	TGCA	2 cut(s)	40, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	3 cut(s)	23, 617, 629
Hsp92II	CATG	4 cut(s)	297, 370, 547, 576
HspAI	GCGC	1 cut(s)	168
Kzo9I	GATC	2 cut(s)	394, 469
LmnI	GCTCC	5 cut(s)	119, 328, 421, 445, 618
Lsp1109I	GCAGC	2 cut(s)	232, 334
MaeIII	GTNAC	3 cut(s)	332, 506, 539
MalI	GATC	2 cut(s)	396, 471
MboI	GATC	2 cut(s)	394, 469
MboII	GAAGA	2 cut(s)	507, 529
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	3 cut(s)	418, 615, 628
MluCI	AATT	5 cut(s)	109, 284, 318, 374, 476
MmeI	TCCRAC	3 cut(s)	29, 443, 541
MnlI	CCTC	4 cut(s)	373, 385, 557, 560
MseI	TTAA	2 cut(s)	224, 479
MslI	CAYNNNNRTG	1 cut(s)	267
MspI	CCGG	1 cut(s)	622
MspR9I	CCNGG	4 cut(s)	219, 399, 623, 687
Mva1269I	GAATGC	1 cut(s)	122
MvaI	CCWGG	3 cut(s)	219, 399, 687
MwoI	GCNNNNNNNGC	1 cut(s)	437
NciI	CCSGG	1 cut(s)	623
NcoI	CCATGG	2 cut(s)	293, 572
NdeII	GATC	2 cut(s)	394, 469
NlaIII	CATG	4 cut(s)	297, 370, 547, 576
NlaIV	GGNNCC	2 cut(s)	396, 669
OliI	CACNNNNGTG	1 cut(s)	267
PctI	GAATGC	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	230
PflMI	CCANNNNNTGG	1 cut(s)	299
PkrI	GCNGC	4 cut(s)	210, 247, 349, 550
Psp124BI	GAGCTC	1 cut(s)	615
Psp6I	CCWGG	3 cut(s)	217, 397, 685
PspGI	CCWGG	3 cut(s)	217, 397, 685
PspN4I	GGNNCC	2 cut(s)	396, 669
PspPI	GGNCC	2 cut(s)	339, 569
PstI	CTGCAG	2 cut(s)	42, 352
PstNI	CAGNNNCTG	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	394
RsaI	GTAC	3 cut(s)	291, 403, 583
RsaNI	GTAC	3 cut(s)	290, 402, 582
RseI	CAYNNNNRTG	1 cut(s)	267
SacI	GAGCTC	1 cut(s)	615
SaqAI	TTAA	2 cut(s)	224, 479
SatI	GCNGC	4 cut(s)	209, 246, 348, 549
Sau3AI	GATC	2 cut(s)	394, 469
Sau96I	GGNCC	2 cut(s)	339, 569
ScaI	AGTACT	1 cut(s)	583
ScrFI	CCNGG	4 cut(s)	219, 399, 623, 687
SduI	GDGCHC	3 cut(s)	418, 615, 628
SetI	ASST	4 cut(s)	220, 433, 448, 615
SfcI	CTRYAG	3 cut(s)	38, 348, 692
SinI	GGWCC	2 cut(s)	339, 569
SmiMI	CAYNNNNRTG	1 cut(s)	267
Sse9I	AATT	5 cut(s)	109, 284, 318, 374, 476
SsiI	CCGC	3 cut(s)	198, 208, 549
SstI	GAGCTC	1 cut(s)	615
StyD4I	CCNGG	4 cut(s)	217, 397, 621, 685
StyI	CCWWGG	3 cut(s)	293, 326, 572
TasI	AATT	5 cut(s)	109, 284, 318, 374, 476
TatI	WGTACW	1 cut(s)	581
TauI	GCSGC	2 cut(s)	211, 551
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	2 cut(s)	224, 479
Tru9I	TTAA	2 cut(s)	224, 479
TscAI	CASTG	1 cut(s)	155
TseI	GCWGC	2 cut(s)	245, 347
TspDTI	ATGAA	2 cut(s)	297, 372
TspRI	CASTG	1 cut(s)	155
Van91I	CCANNNNNTGG	1 cut(s)	299
VpaK11BI	GGWCC	2 cut(s)	339, 569
XapI	RAATTY	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	34
ZrmI	AGTACT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.