pycom08g10230

Calmodulin-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Forward (+)
8575787 .. 8576216
430 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 306 bp
ATGGATCAGGTTGAGAAGATGGTGAAGGTTGTGGATTTGAATTTGGATGGTAAGGTTGATTTTGGAGAGTTTGATAAGATCAAGAAGCTTAATTATTATTCCTTTATTTTCTTCAAACAAATGTTCAATGTCCAATTTGTGCTGTTTCTTCTTTTCCTTTATTTTAAACTCAATCATTCAACCTCAAATGAAGAAATCATTTTTTTTTCTTTTCACGAACAGTCACCCTTAAATAGAATCTGGAACACCAGAAGCTTGAGAGAATTAATCTCAATTTTTATTCAATGGAAAATCAAAAGCCCCTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

102

Amino Acids

12.31

Weight (kDa)

8.93

Isoelectric Point (pI)

27.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 40
AgsI TTSAA 5 cut(s) 40, 115, 127, 180, 284
AluBI AGCT 2 cut(s) 88, 255
AluI AGCT 2 cut(s) 88, 255
AlwI GGATC 1 cut(s) 12
ApoI RAATTY 1 cut(s) 40
AseI ATTAAT 1 cut(s) 266
AsuHPI GGTGA 2 cut(s) 34, 216
BccI CCATC 2 cut(s) 13, 41
BpuEI CTTGAG 1 cut(s) 277
BseGI GGATG 1 cut(s) 52
Bsp143I GATC 2 cut(s) 4, 78
BspPI GGATC 1 cut(s) 12
BssMI GATC 2 cut(s) 4, 78
Bst4CI ACNGT 1 cut(s) 222
BstF5I GGATG 1 cut(s) 52
BstKTI GATC 2 cut(s) 7, 81
BstMBI GATC 2 cut(s) 4, 78
BtsCI GGATG 1 cut(s) 52
CviJI RGCY 3 cut(s) 88, 255, 300
CviKI_1 RGCY 3 cut(s) 88, 255, 300
DpnI GATC 2 cut(s) 6, 80
DpnII GATC 2 cut(s) 4, 78
DraI TTTAAA 1 cut(s) 166
FokI GGATG 1 cut(s) 59
HindIII AAGCTT 2 cut(s) 86, 253
HinfI GANTC 1 cut(s) 237
HphI GGTGA 2 cut(s) 34, 216
Hpy188III TCNNGA 3 cut(s) 82, 215, 241
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 1 cut(s) 222
Kzo9I GATC 2 cut(s) 4, 78
LpnPI CCDG 2 cut(s) 226, 262
MaeIII GTNAC 1 cut(s) 222
MalI GATC 2 cut(s) 6, 80
MboI GATC 2 cut(s) 4, 78
MboII GAAGA 4 cut(s) 28, 103, 140, 203
MluCI AATT 5 cut(s) 40, 91, 134, 263, 273
MnlI CCTC 1 cut(s) 193
MseI TTAA 4 cut(s) 90, 165, 230, 266
NdeII GATC 2 cut(s) 4, 78
NmuCI GTSAC 1 cut(s) 222
PfeI GAWTC 1 cut(s) 237
PshBI ATTAAT 1 cut(s) 266
SaqAI TTAA 4 cut(s) 90, 165, 230, 266
Sau3AI GATC 2 cut(s) 4, 78
SetI ASST 6 cut(s) 12, 30, 57, 90, 185, 257
SgeI CNNG 6 cut(s) 20, 94, 227, 253, 261, 268
SmlI CTYRAG 1 cut(s) 256
SmoI CTYRAG 1 cut(s) 256
Sse9I AATT 5 cut(s) 40, 91, 134, 263, 273
TaaI ACNGT 1 cut(s) 222
TasI AATT 5 cut(s) 40, 91, 134, 263, 273
TfiI GAWTC 1 cut(s) 237
Tru1I TTAA 4 cut(s) 90, 165, 230, 266
Tru9I TTAA 4 cut(s) 90, 165, 230, 266
TseFI GTSAC 1 cut(s) 222
Tsp45I GTSAC 1 cut(s) 222
TspDTI ATGAA 1 cut(s) 204
VspI ATTAAT 1 cut(s) 266
XapI RAATTY 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.