pycom08g10580

Sarcosine oxidase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Forward (+)
8797797 .. 8798033
237 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 237 bp
ATGTACTCAATGACCCCGGATGAGGATTTTGTGATCGATTTCTTGGGTGGGGAGTTTGGGAAGGATGTGGTGGTGGGCGGTGGGTTTTCGGGTCACGGGTTCAAGATGTCGCCGGTGGTGGGGAGGATTTTGGCTGACCTTGCGCTTACTGGGGAGGCTGAAGGAGTGGAGCTGAAGCACTTTAGGATGGCAAGGTTTCAACAGAATCCCAAAGGCAATGCCAAAGACTTTCTGTAA
Functional Annotation

Protein Analysis

79

Amino Acids

8.48

Weight (kDa)

5.16

Isoelectric Point (pI)

24.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAO PF01266 3 - 47 5.8e-07 FAD dependent oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 78
AcuI CTGAAG 2 cut(s) 180, 194
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 22, 119
AgsI TTSAA 2 cut(s) 103, 200
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
AspLEI GCGC 1 cut(s) 145
AsuC2I CCSGG 1 cut(s) 17
BccI CCATC 1 cut(s) 181
BcnI CCSGG 1 cut(s) 17
Bme1390I CCNGG 1 cut(s) 17
BmrFI CCNGG 1 cut(s) 17
BmrI ACTGGG 1 cut(s) 159
BmuI ACTGGG 1 cut(s) 159
BpuMI CCSGG 1 cut(s) 17
Bsa29I ATCGAT 1 cut(s) 36
BsaJI CCNNGG 1 cut(s) 15
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 119
Bse118I RCCGGY 1 cut(s) 112
Bse1I ACTGG 1 cut(s) 154
Bse3DI GCAATG 1 cut(s) 223
BseCI ATCGAT 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 3 cut(s) 25, 70, 192
BseLI CCNNNNNNNGG 2 cut(s) 22, 119
BseMI GCAATG 1 cut(s) 223
BseNI ACTGG 1 cut(s) 154
BshVI ATCGAT 1 cut(s) 36
BsiSI CCGG 2 cut(s) 17, 113
BslI CCNNNNNNNGG 2 cut(s) 22, 119
Bsp143I GATC 1 cut(s) 33
BspACI CCGC 1 cut(s) 78
BspDI ATCGAT 1 cut(s) 36
BsrDI GCAATG 1 cut(s) 223
BsrFI RCCGGY 1 cut(s) 112
BsrI ACTGG 1 cut(s) 154
BssAI RCCGGY 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 1 cut(s) 33
BstF5I GGATG 3 cut(s) 25, 70, 192
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 1 cut(s) 36
BstMBI GATC 1 cut(s) 33
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 15
Bsu15I ATCGAT 1 cut(s) 36
BsuTUI ATCGAT 1 cut(s) 36
BtsCI GGATG 3 cut(s) 25, 70, 192
CfoI GCGC 1 cut(s) 145
Cfr10I RCCGGY 1 cut(s) 112
ClaI ATCGAT 1 cut(s) 36
Csp6I GTAC 1 cut(s) 4
CviJI RGCY 3 cut(s) 134, 158, 172
CviKI_1 RGCY 3 cut(s) 134, 158, 172
CviQI GTAC 1 cut(s) 4
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
Eco57I CTGAAG 2 cut(s) 180, 194
FokI GGATG 3 cut(s) 32, 77, 199
GlaI GCGC 1 cut(s) 144
HapII CCGG 2 cut(s) 17, 113
HhaI GCGC 1 cut(s) 145
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HinfI GANTC 1 cut(s) 205
HpaII CCGG 2 cut(s) 17, 113
Hpy188III TCNNGA 1 cut(s) 103
HpyAV CCTTC 2 cut(s) 55, 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HspAI GCGC 1 cut(s) 143
Kzo9I GATC 1 cut(s) 33
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 3 cut(s) 30, 126, 135
MaeIII GTNAC 1 cut(s) 92
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MnlI CCTC 3 cut(s) 16, 117, 148
MspI CCGG 2 cut(s) 17, 113
MspR9I CCNGG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 140
NciI CCSGG 1 cut(s) 17
NdeII GATC 1 cut(s) 33
NmuCI GTSAC 1 cut(s) 92
PfeI GAWTC 1 cut(s) 205
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
Sau3AI GATC 1 cut(s) 33
ScrFI CCNGG 1 cut(s) 17
SetI ASST 3 cut(s) 141, 174, 197
SgrAI CRCCGGYG 1 cut(s) 112
SsiI CCGC 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 15
TaqI TCGA 1 cut(s) 36
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 205
TseFI GTSAC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.