pycom08g10770

Cenp-O kinetochore centromere component

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Reverse (-)
9026645 .. 9027187
543 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 210 bp
ATGGGATTTTTCAATCAGTTTTGTCTTGATCCTAAAATATTAAAGTGGAAAAATGCAACGCGGTTTATGGGGTCGGCCATTTGGGAAAATGCAACTTTTACTCTGCTTTTACTACTAAAAGATGAGCTCATAGTGTTTTTTCGTTTGTCATTTTCTCAGGGGCATTGCTTTCCAGCTAAAAAGTATAATTTAATTTTTCCTTTGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

70

Amino Acids

8.11

Weight (kDa)

9.45

Isoelectric Point (pI)

21.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 61
AciI CCGC 1 cut(s) 61
AclWI GGATC 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 75
AgsI TTSAA 1 cut(s) 13
AluBI AGCT 3 cut(s) 127, 176, 207
AluI AGCT 3 cut(s) 127, 176, 207
Alw21I GWGCWC 1 cut(s) 129
AlwI GGATC 1 cut(s) 23
AoxI GGCC 1 cut(s) 75
BanII GRGCYC 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 129
Bse3DI GCAATG 1 cut(s) 163
BseMI GCAATG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 61
BshFI GGCC 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 129
BsnI GGCC 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 1 cut(s) 61
BspANI GGCC 1 cut(s) 77
BspCNI CTCAG 1 cut(s) 169
BspFNI CGCG 1 cut(s) 61
BspPI GGATC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 163
BssMI GATC 1 cut(s) 28
BstDEI CTNAG 1 cut(s) 156
BstFNI CGCG 1 cut(s) 61
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstUI CGCG 1 cut(s) 61
BsuRI GGCC 1 cut(s) 77
CviJI RGCY 4 cut(s) 77, 127, 176, 207
CviKI_1 RGCY 4 cut(s) 77, 127, 176, 207
DdeI CTNAG 1 cut(s) 156
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
EaeI YGGCCR 1 cut(s) 75
Ecl136II GAGCTC 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 129
Eco53kI GAGCTC 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 127
EcoT38I GRGCYC 1 cut(s) 129
FaiI YATR 3 cut(s) 68, 131, 186
FriOI GRGCYC 1 cut(s) 129
HaeIII GGCC 1 cut(s) 77
Hpy188III TCNNGA 1 cut(s) 26
HpyCH4V TGCA 2 cut(s) 56, 92
HpyF3I CTNAG 1 cut(s) 156
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 2 cut(s) 143, 186
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 2 cut(s) 187, 192
MseI TTAA 2 cut(s) 41, 191
MvnI CGCG 1 cut(s) 61
NdeII GATC 1 cut(s) 28
Psp124BI GAGCTC 1 cut(s) 129
SacI GAGCTC 1 cut(s) 129
SaqAI TTAA 2 cut(s) 41, 191
Sau3AI GATC 1 cut(s) 28
SduI GDGCHC 1 cut(s) 129
SetI ASST 3 cut(s) 129, 178, 209
SgeI CNNG 4 cut(s) 38, 72, 170, 185
Sse9I AATT 2 cut(s) 187, 192
SsiI CCGC 1 cut(s) 61
SspI AATATT 1 cut(s) 39
SstI GAGCTC 1 cut(s) 129
TasI AATT 2 cut(s) 187, 192
Tru1I TTAA 2 cut(s) 41, 191
Tru9I TTAA 2 cut(s) 41, 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.