pycom08g11420

fibronectin type III

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Forward (+)
9657092 .. 9657465
374 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 276 bp
ATGTCCAAGAATTTAAATGAATTGGTGCTCACTAACAATGGGTTCCACTCGTGTTTGCCAAGGGAGATAGGGATGCTAAAGAAAGTGACAGTGTTTGATGTGAGCCATAATCGGTTTGTGGGAGAGTTGCCGAAGGAAATAGTTGAAATGGAAAGCTTGGAGCAGCTGAATGTGGCTCATAACATGCTCAGAGGGACTATACCAGAAGGTCAAGAATTGCTTGCGGAAAAGGCCAAAGCAGAGAACCTTGTTGCAATGCAAATTGGCTTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.19

Weight (kDa)

5.55

Isoelectric Point (pI)

32.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 4 - 63 1.8e-06 Leucine rich repeat
LRR_14 PF23598 9 - 69 5e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 224
AcsI RAATTY 1 cut(s) 10
AgsI TTSAA 1 cut(s) 146
AluBI AGCT 2 cut(s) 156, 166
AluI AGCT 2 cut(s) 156, 166
Alw21I GWGCWC 1 cut(s) 30
AoxI GGCC 1 cut(s) 231
ApeKI GCWGC 1 cut(s) 163
ApoI RAATTY 1 cut(s) 10
BauI CACGAG 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 175
BisI GCNGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 165
BmiI GGNNCC 1 cut(s) 44
BmsI GCATC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 59
Bse3DI GCAATG 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 1 cut(s) 78
BseMI GCAATG 1 cut(s) 261
BseMII CTCAG 1 cut(s) 202
BseXI GCAGC 1 cut(s) 175
BshFI GGCC 1 cut(s) 233
BsiHKAI GWGCWC 1 cut(s) 30
BslFI GGGAC 1 cut(s) 208
BsmFI GGGAC 1 cut(s) 208
BsnI GGCC 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 30
BspACI CCGC 1 cut(s) 224
BspANI GGCC 1 cut(s) 233
BspCNI CTCAG 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 261
BssECI CCNNGG 1 cut(s) 59
BssSI CACGAG 1 cut(s) 49
BssT1I CCWWGG 1 cut(s) 59
Bst2BI CACGAG 1 cut(s) 49
Bst4CI ACNGT 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 78
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstNSI RCATGY 1 cut(s) 187
BstV1I GCAGC 1 cut(s) 175
BsuRI GGCC 1 cut(s) 233
BtsCI GGATG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 96
Cac8I GCNNGC 1 cut(s) 222
CviAII CATG 1 cut(s) 184
CviJI RGCY 6 cut(s) 105, 156, 166, 176, 233, 267
CviKI_1 RGCY 6 cut(s) 105, 156, 166, 176, 233, 267
DdeI CTNAG 1 cut(s) 188
DraI TTTAAA 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 59
EcoT14I CCWWGG 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 59
FaeI CATG 1 cut(s) 187
FaiI YATR 4 cut(s) 108, 180, 185, 200
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FaqI GGGAC 1 cut(s) 208
FatI CATG 1 cut(s) 183
Fnu4HI GCNGC 1 cut(s) 164
FokI GGATG 1 cut(s) 85
Fsp4HI GCNGC 1 cut(s) 164
GluI GCNGC 1 cut(s) 164
HaeIII GGCC 1 cut(s) 233
Hin1II CATG 1 cut(s) 187
HindIII AAGCTT 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 191
Hpy188III TCNNGA 1 cut(s) 212
HpyAV CCTTC 2 cut(s) 127, 200
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4V TGCA 2 cut(s) 254, 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 1 cut(s) 188
Hsp92II CATG 1 cut(s) 187
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 1 cut(s) 216
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 85
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 4 cut(s) 10, 20, 215, 261
MnlI CCTC 1 cut(s) 185
MseI TTAA 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 166
MwoI GCNNNNNNNGC 1 cut(s) 230
NlaIII CATG 1 cut(s) 187
NlaIV GGNNCC 1 cut(s) 44
NmuCI GTSAC 1 cut(s) 85
NspI RCATGY 1 cut(s) 187
PkrI GCNGC 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 44
PvuII CAGCTG 1 cut(s) 166
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 1 cut(s) 164
SduI GDGCHC 1 cut(s) 30
SetI ASST 4 cut(s) 158, 168, 211, 249
SfaNI GCATC 1 cut(s) 63
SmiI ATTTAAAT 1 cut(s) 15
Sse9I AATT 4 cut(s) 10, 20, 215, 261
SsiI CCGC 1 cut(s) 224
StyI CCWWGG 1 cut(s) 59
SwaI ATTTAAAT 1 cut(s) 15
TaaI ACNGT 1 cut(s) 91
TasI AATT 4 cut(s) 10, 20, 215, 261
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TscAI CASTG 1 cut(s) 96
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 1 cut(s) 33
TspRI CASTG 1 cut(s) 96
XapI RAATTY 1 cut(s) 10
XceI RCATGY 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.