pycom08g11510

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Forward (+)
9720641 .. 9722312
1672 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 309 bp
ATGGACCAATTCCTAAACCCTAGAAAAACGGGGTCTCAGACCGATTCGTTTCTAATTATAATCAACCACTCTTACCTCACTCACTCCCACCTCTCCACCATCCGTCACTCCCTCAACTCCCTCGACTCTAACGACATCCCAGAGAACCCAGCCCATCACCGCCGCTGTGACCAACACAACCCATCCAGCCATCCTCCGACCTCGACGACATCCCAATTCCTAGGACCCAAAGAACCCAGGTACAGTTTTGGATGGAGTCATGGAAAAGAGAAGCTAAAATCTGGAAAGCCTGATATGTTGAAAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

103

Amino Acids

11.56

Weight (kDa)

9.25

Isoelectric Point (pI)

27.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 59
AciI CCGC 2 cut(s) 160, 163
AfaI GTAC 1 cut(s) 242
AgsI TTSAA 1 cut(s) 301
AjnI CCWGG 1 cut(s) 236
AluBI AGCT 1 cut(s) 274
AluI AGCT 1 cut(s) 274
Alw26I GTCTC 1 cut(s) 39
AspA2I CCTAGG 1 cut(s) 220
AspS9I GGNCC 2 cut(s) 4, 224
AsuHPI GGTGA 1 cut(s) 149
AvaII GGWCC 2 cut(s) 4, 224
AvrII CCTAGG 1 cut(s) 220
BccI CCATC 5 cut(s) 107, 162, 190, 198, 246
BciT130I CCWGG 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 2 cut(s) 21, 221
BisI GCNGC 1 cut(s) 163
BlnI CCTAGG 1 cut(s) 220
BlsI GCNGC 1 cut(s) 164
Bme1390I CCNGG 1 cut(s) 238
Bme18I GGWCC 2 cut(s) 4, 224
BmgT120I GGNCC 2 cut(s) 4, 224
BmiI GGNNCC 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 238
BsaI GGTCTC 1 cut(s) 39
BsaJI CCNNGG 2 cut(s) 220, 236
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 2 cut(s) 220, 236
BseGI GGATG 6 cut(s) 99, 135, 182, 190, 209, 257
BseMII CTCAG 1 cut(s) 50
BseYI CCCAGC 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 39
Bso31I GGTCTC 1 cut(s) 39
BspACI CCGC 2 cut(s) 160, 163
BspCNI CTCAG 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 226
BspTNI GGTCTC 1 cut(s) 39
BssECI CCNNGG 2 cut(s) 220, 236
BssT1I CCWWGG 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 245
BstDEI CTNAG 1 cut(s) 36
BstF5I GGATG 6 cut(s) 99, 135, 182, 190, 209, 257
BstMAI GTCTC 1 cut(s) 39
BstNI CCWGG 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 236
BtsCI GGATG 6 cut(s) 99, 135, 182, 190, 209, 257
Cfr13I GGNCC 2 cut(s) 4, 224
Csp6I GTAC 1 cut(s) 241
CviAII CATG 1 cut(s) 260
CviJI RGCY 5 cut(s) 152, 189, 274, 289, 306
CviKI_1 RGCY 5 cut(s) 152, 189, 274, 289, 306
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 220
Eco31I GGTCTC 1 cut(s) 39
Eco47I GGWCC 2 cut(s) 4, 224
EcoO109I RGGNCCY 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 1 cut(s) 263
FaiI YATR 3 cut(s) 59, 261, 296
FatI CATG 1 cut(s) 259
Fnu4HI GCNGC 1 cut(s) 163
FokI GGATG 6 cut(s) 86, 122, 169, 177, 196, 264
Fsp4HI GCNGC 1 cut(s) 163
FspBI CTAG 2 cut(s) 21, 221
GluI GCNGC 1 cut(s) 163
GsaI CCCAGC 1 cut(s) 152
Hin1II CATG 1 cut(s) 263
HinfI GANTC 3 cut(s) 44, 125, 256
HphI GGTGA 1 cut(s) 149
Hpy188I TCNGA 2 cut(s) 39, 198
Hpy188III TCNNGA 1 cut(s) 282
Hpy99I CGWCG 1 cut(s) 208
HpyCH4III ACNGT 1 cut(s) 245
HpyF3I CTNAG 1 cut(s) 36
Hsp92II CATG 1 cut(s) 263
LpnPI CCDG 7 cut(s) 153, 162, 199, 223, 250, 267, 303
MaeI CTAG 2 cut(s) 21, 221
MaeIII GTNAC 2 cut(s) 104, 167
MluCI AATT 3 cut(s) 8, 54, 215
MlyI GAGTC 2 cut(s) 119, 265
MmeI TCCRAC 1 cut(s) 221
MnlI CCTC 6 cut(s) 86, 101, 122, 131, 204, 211
MspA1I CMGCKG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 238
MvaI CCWGG 1 cut(s) 238
NlaIII CATG 1 cut(s) 263
NlaIV GGNNCC 1 cut(s) 226
NmuCI GTSAC 2 cut(s) 104, 167
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 164
PleI GAGTC 2 cut(s) 119, 264
PpsI GAGTC 2 cut(s) 119, 264
PpuMI RGGWCCY 1 cut(s) 224
PsiI TTATAA 1 cut(s) 59
Psp5II RGGWCCY 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 236
PspFI CCCAGC 1 cut(s) 148
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 1 cut(s) 226
PspPI GGNCC 2 cut(s) 4, 224
PspPPI RGGWCCY 1 cut(s) 224
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SatI GCNGC 1 cut(s) 163
Sau96I GGNCC 2 cut(s) 4, 224
SchI GAGTC 2 cut(s) 119, 265
ScrFI CCNGG 1 cut(s) 238
SetI ASST 5 cut(s) 78, 93, 203, 242, 276
SinI GGWCC 2 cut(s) 4, 224
Sse9I AATT 3 cut(s) 8, 54, 215
SsiI CCGC 2 cut(s) 160, 163
SspMI CTAG 2 cut(s) 21, 221
StyD4I CCNGG 1 cut(s) 236
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 1 cut(s) 245
TaqI TCGA 2 cut(s) 123, 203
TaqII GACCGA 1 cut(s) 56
TasI AATT 3 cut(s) 8, 54, 215
TauI GCSGC 1 cut(s) 165
TfiI GAWTC 1 cut(s) 44
TseFI GTSAC 2 cut(s) 104, 167
Tsp45I GTSAC 2 cut(s) 104, 167
TspGWI ACGGA 1 cut(s) 92
VpaK11BI GGWCC 2 cut(s) 4, 224
XmaJI CCTAGG 1 cut(s) 220
XspI CTAG 2 cut(s) 21, 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.