Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

10108947 .. 10109515

Gene Structure 569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCTAATTAAGCACAATATCTGTACCAAGAAAGACACGAGGGAAGCTCGCTTCTCTGTCTCAGATGCTTCTCTTCTTCTCCCCATTCCTCCAAAAGCCCCCCTTTATATTCATTTCTCTGGTTCTTCTCCCCCAACTCCAATGGCAACAAAGTCCGAGTCAGCAAGCTTCAGCACATCATTCACGACCTCTGAAAGTGGAAACGCTTCTCCCAAGCCCTCCAGGTTGCAGATTTCAAAGTGTTCGAATCAGAAGGGGATATGCATATTTTCGCCGGTTGAGCATGCCGTGCAGCTGGATTTGATTGGGAAGGAAGAATTTTGCACAAATTGCTGTGAAATAAAGCCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

118

Amino Acids

12.69

Weight (kDa)

8.57

Isoelectric Point (pI)

51.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	317
AcuI	CTGAAG	1 cut(s)	154
AfaI	GTAC	1 cut(s)	25
AgsI	TTSAA	1 cut(s)	237
AjnI	CCWGG	1 cut(s)	221
AluBI	AGCT	3 cut(s)	47, 168, 295
AluI	AGCT	3 cut(s)	47, 168, 295
Alw26I	GTCTC	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	292
ApoI	RAATTY	1 cut(s)	317
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
Asp700I	GAANNNNTTC	1 cut(s)	205
AsuII	TTCGAA	1 cut(s)	245
BauI	CACGAG	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	304
BceAI	ACGGC	1 cut(s)	272
BciT130I	CCWGG	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	64
BisI	GCNGC	1 cut(s)	293
BlsI	GCNGC	1 cut(s)	294
Bme1390I	CCNGG	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	223
BmsI	GCATC	1 cut(s)	55
BplI	GAGNNNNNCTC	2 cut(s)	31, 63
BpmI	CTGGAG	1 cut(s)	205
Bpu14I	TTCGAA	1 cut(s)	245
Bse118I	RCCGGY	1 cut(s)	274
Bse1I	ACTGG	1 cut(s)	347
BseBI	CCWGG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	347
BseXI	GCAGC	1 cut(s)	304
BsgI	GTGCAG	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	275
BsmAI	GTCTC	1 cut(s)	64
Bsp119I	TTCGAA	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	74
BspT104I	TTCGAA	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	347
BssAI	RCCGGY	1 cut(s)	274
BssSI	CACGAG	1 cut(s)	37
Bst2BI	CACGAG	1 cut(s)	37
Bst2UI	CCWGG	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	78
BstAPI	GCANNNNNTGC	2 cut(s)	289, 330
BstBI	TTCGAA	1 cut(s)	245
BstC8I	GCNNGC	3 cut(s)	49, 166, 285
BstDEI	CTNAG	1 cut(s)	61
BstMAI	GTCTC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 280, 289, 330
BstNI	CCWGG	1 cut(s)	223
BstNSI	RCATGY	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	304
Cac8I	GCNNGC	3 cut(s)	49, 166, 285
Cfr10I	RCCGGY	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	24
CviAII	CATG	1 cut(s)	284
CviJI	RGCY	6 cut(s)	47, 98, 168, 217, 295, 346
CviKI_1	RGCY	6 cut(s)	47, 98, 168, 217, 295, 346
CviQI	GTAC	1 cut(s)	24
DdeI	CTNAG	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	221
EcoT22I	ATGCAT	1 cut(s)	266
FaeI	CATG	1 cut(s)	287
FaiI	YATR	4 cut(s)	108, 262, 266, 285
FalI	AAGNNNNNCTT	2 cut(s)	87, 119
FatI	CATG	1 cut(s)	283
Fnu4HI	GCNGC	1 cut(s)	293
Fsp4HI	GCNGC	1 cut(s)	293
GluI	GCNGC	1 cut(s)	293
GsuI	CTGGAG	1 cut(s)	205
HapII	CCGG	1 cut(s)	275
Hin1II	CATG	1 cut(s)	287
HindIII	AAGCTT	1 cut(s)	166
HinfI	GANTC	2 cut(s)	158, 247
HpaII	CCGG	1 cut(s)	275
Hpy188I	TCNGA	4 cut(s)	64, 157, 193, 252
Hpy188III	TCNNGA	1 cut(s)	184
HpyAV	CCTTC	2 cut(s)	247, 304
HpyCH4V	TGCA	4 cut(s)	229, 264, 292, 324
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 280, 289, 330
HpyF3I	CTNAG	1 cut(s)	61
Hsp92II	CATG	1 cut(s)	287
LpnPI	CCDG	5 cut(s)	105, 208, 235, 281, 288
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	1 cut(s)	55
MboII	GAAGA	4 cut(s)	65, 68, 117, 326
MluCI	AATT	3 cut(s)	6, 317, 328
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	4 cut(s)	33, 99, 199, 229
Mph1103I	ATGCAT	1 cut(s)	266
MroXI	GAANNNNTTC	1 cut(s)	205
MseI	TTAA	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	295
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	223
MwoI	GCNNNNNNNGC	4 cut(s)	10, 280, 289, 330
NlaIII	CATG	1 cut(s)	287
NsiI	ATGCAT	1 cut(s)	266
NspI	RCATGY	1 cut(s)	287
NspV	TTCGAA	1 cut(s)	245
PaeI	GCATGC	1 cut(s)	287
PdmI	GAANNNNTTC	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	247
PkrI	GCNGC	1 cut(s)	294
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	295
RsaI	GTAC	1 cut(s)	25
RsaNI	GTAC	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	1 cut(s)	293
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	223
SetI	ASST	5 cut(s)	49, 170, 191, 227, 297
SfaNI	GCATC	1 cut(s)	55
SfuI	TTCGAA	1 cut(s)	245
SphI	GCATGC	1 cut(s)	287
Sse9I	AATT	3 cut(s)	6, 317, 328
StyD4I	CCNGG	1 cut(s)	221
TaqI	TCGA	1 cut(s)	245
TasI	AATT	3 cut(s)	6, 317, 328
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TseI	GCWGC	1 cut(s)	292
TspDTI	ATGAA	1 cut(s)	101
XapI	RAATTY	1 cut(s)	317
XceI	RCATGY	1 cut(s)	287
XmnI	GAANNNNTTC	1 cut(s)	205
Zsp2I	ATGCAT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.