Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

10448498 .. 10449410

Gene Structure 913 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTTGCAGACATTGATGTTCACTCTTTGTGGGAGGCTCAATATTCGCAATCATCGTAATAAAAAAATTCCTACCTCAGTTCTTTGGGGATATTTTGCCTACATGGCGATTGATAATCTCCCAGGTAATCAGTTCTGGAAGAGGCTCTTGCTACTCTCCATCAGCCCTAACCGACGTACAAGTAAGGTTTTGGAAAGTTTTCATGCTTCATTCGTCGAGTTAGTACCGTTCAAGTACATAGTTGCATTTACGCTCTTCCAACTCGTGTACTTCCTGATATATTTCAGAGTGACATGGATACCTATAGCTGGAATATTGTTCCCCCTGCCATTCTTCCTTCTCATAAGCATAAGGGAACATTTGCTGCCCGGGTTCTTTCATCCTGCCCATCTTCAAGAACTCGATTCTTGTGAGTGGGAAGAAGAAAAAGTACCACCCGGCCCTGGAAATGACGACGGTACAGATGATTTCTATGATGCTGAGATATTGGATGAGATGACAAGAAGCAGAGGAGAGTTGAAGCTCAGAACCAGCTTCAGTAGTGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006855 GO:0006873 GO:0006885 GO:0007154 GO:0008150 GO:0008509 GO:0009605 GO:0009987 GO:0009991 GO:0010036 GO:0015075 GO:0015103 GO:0015238 GO:0015318 GO:0015562 GO:0015698 GO:0015893 GO:0016020 GO:0016021 GO:0019725 GO:0022857 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0031226 GO:0031667 GO:0031668 GO:0031669 GO:0034220 GO:0035445 GO:0042221 GO:0042493 GO:0042592 GO:0044425 GO:0044459 GO:0044464 GO:0046713 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0051716 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071496 GO:0071944 GO:0080029 GO:0080139 GO:0098656 GO:0098660 GO:0098661 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HCO3_cotransp

Protein Analysis

184

Amino Acids

21.4

Weight (kDa)

5.95

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HCO3_cotransp	PF00955	7 - 136	8.7e-19	HCO3- transporter integral membrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	66
AcuI	CTGAAG	1 cut(s)	520
AfaI	GTAC	6 cut(s)	178, 225, 236, 269, 432, 460
AfiI	CCNNNNNNNGG	2 cut(s)	308, 443
AgsI	TTSAA	3 cut(s)	232, 395, 520
AjnI	CCWGG	2 cut(s)	121, 442
AluBI	AGCT	3 cut(s)	308, 523, 534
AluI	AGCT	3 cut(s)	308, 523, 534
Ama87I	CYCGRG	1 cut(s)	368
AoxI	GGCC	1 cut(s)	439
ApeKI	GCWGC	1 cut(s)	364
ApoI	RAATTY	1 cut(s)	66
Asp700I	GAANNNNTTC	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	440
AsuC2I	CCSGG	3 cut(s)	369, 370, 438
AvaI	CYCGRG	1 cut(s)	368
BarI	GAAGNNNNNNTAC	2 cut(s)	414, 446
BauI	CACGAG	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	351
BccI	CCATC	2 cut(s)	167, 396
BciT130I	CCWGG	2 cut(s)	123, 444
BciVI	GTATCC	1 cut(s)	291
BcnI	CCSGG	3 cut(s)	369, 370, 438
BfmI	CTRYAG	1 cut(s)	303
BfuI	GTATCC	1 cut(s)	291
BglI	GCCNNNNNGGC	1 cut(s)	104
BisI	GCNGC	1 cut(s)	365
BlsI	GCNGC	1 cut(s)	366
Bme1390I	CCNGG	5 cut(s)	123, 369, 370, 438, 444
BmeT110I	CYCGRG	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	440
BmrFI	CCNGG	5 cut(s)	123, 369, 370, 438, 444
BmsI	GCATC	1 cut(s)	466
BpuMI	CCSGG	3 cut(s)	369, 370, 438
BsaJI	CCNNGG	3 cut(s)	121, 368, 442
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 443
BseBI	CCWGG	2 cut(s)	123, 444
BseDI	CCNNGG	3 cut(s)	121, 368, 442
BseGI	GGATG	2 cut(s)	379, 496
BseLI	CCNNNNNNNGG	2 cut(s)	308, 443
BseMII	CTCAG	3 cut(s)	90, 471, 538
BseRI	GAGGAG	1 cut(s)	525
BseXI	GCAGC	1 cut(s)	351
BshFI	GGCC	1 cut(s)	441
BsiHKCI	CYCGRG	1 cut(s)	368
BsiSI	CCGG	2 cut(s)	369, 438
BslI	CCNNNNNNNGG	2 cut(s)	308, 443
BsnI	GGCC	1 cut(s)	441
BsoBI	CYCGRG	1 cut(s)	368
BspANI	GGCC	1 cut(s)	441
BspCNI	CTCAG	3 cut(s)	89, 472, 537
BspQI	GCTCTTC	1 cut(s)	260
BssECI	CCNNGG	3 cut(s)	121, 368, 442
BssSI	CACGAG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	263
Bst2UI	CCWGG	2 cut(s)	123, 444
Bst4CI	ACNGT	2 cut(s)	228, 458
Bst6I	CTCTTC	2 cut(s)	134, 260
BstDEI	CTNAG	3 cut(s)	76, 480, 524
BstF5I	GGATG	2 cut(s)	379, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNI	CCWGG	2 cut(s)	123, 444
BstSCI	CCNGG	5 cut(s)	121, 367, 368, 436, 442
BstSFI	CTRYAG	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	351
BsuI	GTATCC	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	441
BtsCI	GGATG	2 cut(s)	379, 496
Cfr13I	GGNCC	1 cut(s)	440
Cfr9I	CCCGGG	1 cut(s)	368
Csp6I	GTAC	6 cut(s)	177, 224, 235, 268, 431, 459
CviAII	CATG	3 cut(s)	103, 203, 294
CviJI	RGCY	7 cut(s)	37, 145, 165, 308, 441, 523, 534
CviKI_1	RGCY	7 cut(s)	37, 145, 165, 308, 441, 523, 534
CviQI	GTAC	6 cut(s)	177, 224, 235, 268, 431, 459
DdeI	CTNAG	3 cut(s)	76, 480, 524
Eam1104I	CTCTTC	2 cut(s)	134, 260
EarI	CTCTTC	2 cut(s)	134, 260
Eco57I	CTGAAG	1 cut(s)	520
Eco88I	CYCGRG	1 cut(s)	368
EcoRII	CCWGG	2 cut(s)	121, 442
FaeI	CATG	3 cut(s)	106, 206, 297
FaiI	YATR	9 cut(s)	104, 204, 239, 280, 295, 305, 344, 350, 474
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FatI	CATG	3 cut(s)	102, 202, 293
Fnu4HI	GCNGC	1 cut(s)	365
FokI	GGATG	2 cut(s)	366, 503
Fsp4HI	GCNGC	1 cut(s)	365
GluI	GCNGC	1 cut(s)	365
HaeIII	GGCC	1 cut(s)	441
HapII	CCGG	2 cut(s)	369, 438
Hin1II	CATG	3 cut(s)	106, 206, 297
HinfI	GANTC	1 cut(s)	404
HpaII	CCGG	2 cut(s)	369, 438
Hpy166II	GTNNAC	2 cut(s)	21, 268
Hpy188I	TCNGA	2 cut(s)	287, 527
Hpy188III	TCNNGA	3 cut(s)	136, 274, 395
Hpy8I	GTNNAC	2 cut(s)	21, 268
Hpy99I	CGWCG	3 cut(s)	177, 218, 458
HpyAV	CCTTC	1 cut(s)	347
HpyCH4III	ACNGT	2 cut(s)	228, 458
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	2 cut(s)	7, 245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	3 cut(s)	76, 480, 524
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	3 cut(s)	106, 206, 297
LguI	GCTCTTC	1 cut(s)	260
Lsp1109I	GCAGC	1 cut(s)	351
LweI	GCATC	1 cut(s)	466
MaeII	ACGT	1 cut(s)	175
MaeIII	GTNAC	1 cut(s)	289
MboII	GAAGA	6 cut(s)	151, 247, 325, 383, 431, 434
MluCI	AATT	1 cut(s)	66
MmeI	TCCRAC	1 cut(s)	283
MnlI	CCTC	4 cut(s)	27, 85, 135, 503
MroXI	GAANNNNTTC	1 cut(s)	198
MspI	CCGG	2 cut(s)	369, 438
MspR9I	CCNGG	5 cut(s)	123, 369, 370, 438, 444
MvaI	CCWGG	2 cut(s)	123, 444
MwoI	GCNNNNNNNGC	1 cut(s)	104
NciI	CCSGG	3 cut(s)	369, 370, 438
NlaIII	CATG	3 cut(s)	106, 206, 297
NmuCI	GTSAC	1 cut(s)	289
PciSI	GCTCTTC	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	404
PkrI	GCNGC	1 cut(s)	366
Psp6I	CCWGG	2 cut(s)	121, 442
PspGI	CCWGG	2 cut(s)	121, 442
PspPI	GGNCC	1 cut(s)	440
RsaI	GTAC	6 cut(s)	178, 225, 236, 269, 432, 460
RsaNI	GTAC	6 cut(s)	177, 224, 235, 268, 431, 459
SapI	GCTCTTC	1 cut(s)	260
SatI	GCNGC	1 cut(s)	365
Sau96I	GGNCC	1 cut(s)	440
ScrFI	CCNGG	5 cut(s)	123, 369, 370, 438, 444
SetI	ASST	8 cut(s)	77, 127, 178, 189, 304, 310, 525, 536
SfaNI	GCATC	1 cut(s)	466
SfcI	CTRYAG	1 cut(s)	303
SmaI	CCCGGG	1 cut(s)	370
Sse9I	AATT	1 cut(s)	66
SspI	AATATT	2 cut(s)	43, 315
StyD4I	CCNGG	5 cut(s)	121, 367, 368, 436, 442
TaaI	ACNGT	2 cut(s)	228, 458
TaiI	ACGT	1 cut(s)	178
TaqI	TCGA	2 cut(s)	216, 402
TasI	AATT	1 cut(s)	66
TatI	WGTACW	2 cut(s)	234, 267
TfiI	GAWTC	1 cut(s)	404
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	1 cut(s)	364
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	3 cut(s)	191, 198, 368
TspMI	CCCGGG	1 cut(s)	368
XapI	RAATTY	1 cut(s)	66
XmaI	CCCGGG	1 cut(s)	368
XmnI	GAANNNNTTC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.