Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

10853389 .. 10855732

Gene Structure 2344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGAAGCCAATGCGGGACTGGTGGCCGGCTCTTACAAGAGGAACGAGCTCGTTCGGATTCGCCACGATTCTGATAGCTCGTCCAAACCCGTAAAGAATCTGAACGGGCAGATATGTCAGATCGATCCTCGTAGGACATGTGGTGATACTGTTGGACTTACAGCCACTGGTGATGTCTTTGTTGCCTGCAATGAGTGTGCCTTTCCAGTCTGTCGACCTTGTTATGAGTATGAGAGGAAAGATGGAAACCAGGCTTGCCCACAGTGCAAGACTAGATATAAAAGGCACAAAGGGAGTCCTCGAGTGGATGGAGATGACGATGAGGATGACATTGATGATCTGGAGAATGAGTTCAATTATACACAAGGAACTAGCAATGCCAGGCGCCAGTGGCAAGGAGAAGATGCTGATCTCTCATCTTCCTCGAGACATGAATCTCAACAGCCGATTCCCCTTTTAACTAATGGACAGTCGGTGTCTGGTGAGATTCCTTGTGCCACACCGGACAACCAGTCTGTGCGAACTACATCAGGTCCTTTGGATCCACGACAGCCAGTTCCAGTGAGAATAGTGGACCCGTCAAAGGACTTGAATTCTTATGGGCTAGGAAATGTTGACTGGAAAGAAAGGGTTGAAGGCTGGAAACTCAAACAGGACAAAAATATGATGCAGATGACTAGTAGATACGCTGAAGGAAAGGGGGACATGGAAGGCACTGGTTCAAATGGTGAAGAACTCCAAATGGCTGATGATGCTAGACAACCTTTGAGTCGCATCGTGCCTATTTCTTCATCCCATTTGACACCTTACCGTGTTGTGATCGATAGGGTCTTCGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009628 GO:0009651 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042538 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098791 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

280

Amino Acids

30.99

Weight (kDa)

5.17

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UDP	PF14569	29 - 110	3.4e-42	Zinc-binding RING-finger
zf-RING_4	PF14570	54 - 94	2.9e-06	RING/Ubox like zinc-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	384
AccI	GTMKAC	1 cut(s)	214
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	3 cut(s)	119, 536, 549
AcoI	YGGCCR	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	592
AcuI	CTGAAG	1 cut(s)	711
AcyI	GRCGYC	1 cut(s)	385
AfiI	CCNNNNNNNGG	1 cut(s)	583
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	4 cut(s)	355, 592, 635, 723
AhdI	GACNNNNNGTC	1 cut(s)	511
AhlI	ACTAGT	1 cut(s)	677
AjnI	CCWGG	2 cut(s)	249, 380
AloI	GAACNNNNNNTCC	2 cut(s)	335, 367
AluBI	AGCT	2 cut(s)	49, 78
AluI	AGCT	2 cut(s)	49, 78
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	421
AlwI	GGATC	3 cut(s)	119, 536, 549
AlwNI	CAGNNNCTG	1 cut(s)	167
Ama87I	CYCGRG	2 cut(s)	300, 424
AoxI	GGCC	1 cut(s)	24
ApoI	RAATTY	1 cut(s)	592
Asp700I	GAANNNNTTC	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	387
AspS9I	GGNCC	2 cut(s)	533, 574
AsuHPI	GGTGA	4 cut(s)	155, 182, 494, 740
AvaI	CYCGRG	2 cut(s)	300, 424
AvaII	GGWCC	2 cut(s)	533, 574
BamHI	GGATCC	1 cut(s)	541
BanI	GGYRCC	1 cut(s)	384
BanII	GRGCYC	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	823
Bbv12I	GWGCWC	1 cut(s)	51
BccI	CCATC	2 cut(s)	236, 302
BciT130I	CCWGG	2 cut(s)	251, 382
BcoDI	GTCTC	1 cut(s)	421
BcuI	ACTAGT	1 cut(s)	677
BfaI	CTAG	5 cut(s)	273, 372, 605, 678, 756
BfoI	RGCGCY	1 cut(s)	388
Bme1390I	CCNGG	2 cut(s)	251, 382
Bme18I	GGWCC	2 cut(s)	533, 574
BmeRI	GACNNNNNGTC	1 cut(s)	511
BmeT110I	CYCGRG	2 cut(s)	300, 424
BmgT120I	GGNCC	2 cut(s)	533, 574
BmiI	GGNNCC	3 cut(s)	386, 543, 576
BmrFI	CCNGG	2 cut(s)	251, 382
BmsI	GCATC	4 cut(s)	394, 657, 742, 783
BpiI	GAAGAC	1 cut(s)	823
BpmI	CTGGAG	1 cut(s)	362
Bsa29I	ATCGAT	2 cut(s)	123, 822
BsaBI	GATNNNNATC	1 cut(s)	408
BsaHI	GRCGYC	1 cut(s)	385
BsaWI	WCCGGW	1 cut(s)	502
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	1 cut(s)	583
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	9 cut(s)	24, 172, 206, 388, 511, 554, 560, 623, 721
Bse3DI	GCAATG	2 cut(s)	196, 382
Bse8I	GATNNNNATC	1 cut(s)	408
BseBI	CCWGG	2 cut(s)	251, 382
BseCI	ATCGAT	2 cut(s)	123, 822
BseGI	GGATG	3 cut(s)	313, 331, 791
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	1 cut(s)	583
BseMI	GCAATG	2 cut(s)	196, 382
BseNI	ACTGG	9 cut(s)	24, 172, 206, 388, 511, 554, 560, 623, 721
BshFI	GGCC	1 cut(s)	26
BshNI	GGYRCC	1 cut(s)	384
BshVI	ATCGAT	2 cut(s)	123, 822
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	2 cut(s)	300, 424
BsiSI	CCGG	2 cut(s)	27, 503
BslFI	GGGAC	2 cut(s)	30, 716
BslI	CCNNNNNNNGG	1 cut(s)	583
BsmAI	GTCTC	1 cut(s)	421
BsmFI	GGGAC	2 cut(s)	30, 716
BsnI	GGCC	1 cut(s)	26
BsoBI	CYCGRG	2 cut(s)	300, 424
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	6 cut(s)	120, 124, 337, 409, 541, 819
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	1 cut(s)	26
BspDI	ATCGAT	2 cut(s)	123, 822
BspLI	GGNNCC	3 cut(s)	386, 543, 576
BspPI	GGATC	3 cut(s)	119, 536, 549
BspT107I	GGYRCC	1 cut(s)	384
BsrDI	GCAATG	2 cut(s)	196, 382
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	9 cut(s)	24, 172, 206, 388, 511, 554, 560, 623, 721
BssAI	RCCGGY	1 cut(s)	26
BssMI	GATC	6 cut(s)	120, 124, 337, 409, 541, 819
BssNI	GRCGYC	1 cut(s)	385
Bst2UI	CCWGG	2 cut(s)	251, 382
Bst4CI	ACNGT	4 cut(s)	151, 264, 471, 812
BstACI	GRCGYC	1 cut(s)	385
BstC8I	GCNNGC	3 cut(s)	28, 187, 256
BstF5I	GGATG	3 cut(s)	313, 331, 791
BstH2I	RGCGCY	1 cut(s)	388
BstHHI	GCGC	1 cut(s)	387
BstKTI	GATC	6 cut(s)	123, 127, 340, 412, 544, 822
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	6 cut(s)	120, 124, 337, 409, 541, 819
BstMWI	GCNNNNNNNGC	3 cut(s)	264, 391, 752
BstNI	CCWGG	2 cut(s)	251, 382
BstNSI	RCATGY	1 cut(s)	141
BstSCI	CCNGG	2 cut(s)	249, 380
BstV2I	GAAGAC	1 cut(s)	823
BstX2I	RGATCY	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	541
Bsu15I	ATCGAT	2 cut(s)	123, 822
BsuRI	GGCC	1 cut(s)	26
BsuTUI	ATCGAT	2 cut(s)	123, 822
BtsCI	GGATG	3 cut(s)	313, 331, 791
BtsIMutI	CAGTG	5 cut(s)	165, 269, 395, 567, 714
Cac8I	GCNNGC	3 cut(s)	28, 187, 256
CaiI	CAGNNNCTG	1 cut(s)	167
CfoI	GCGC	1 cut(s)	387
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	2 cut(s)	533, 574
ClaI	ATCGAT	2 cut(s)	123, 822
CviAII	CATG	3 cut(s)	138, 431, 706
DinI	GGCGCC	1 cut(s)	386
DpnI	GATC	6 cut(s)	122, 126, 339, 411, 543, 821
DpnII	GATC	6 cut(s)	120, 124, 337, 409, 541, 819
DriI	GACNNNNNGTC	1 cut(s)	511
EaeI	YGGCCR	1 cut(s)	24
Eam1105I	GACNNNNNGTC	1 cut(s)	511
Ecl136II	GAGCTC	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	51
Eco47I	GGWCC	2 cut(s)	533, 574
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	711
Eco88I	CYCGRG	2 cut(s)	300, 424
EcoICRI	GAGCTC	1 cut(s)	49
EcoO109I	RGGNCCY	1 cut(s)	533
EcoRI	GAATTC	1 cut(s)	592
EcoRII	CCWGG	2 cut(s)	249, 380
EcoT38I	GRGCYC	1 cut(s)	51
EgeI	GGCGCC	1 cut(s)	386
EheI	GGCGCC	1 cut(s)	386
FaeI	CATG	3 cut(s)	141, 434, 709
FaqI	GGGAC	2 cut(s)	30, 716
FatI	CATG	3 cut(s)	137, 430, 705
FauI	CCCGC	1 cut(s)	7
FblI	GTMKAC	1 cut(s)	214
FokI	GGATG	3 cut(s)	320, 338, 778
FriOI	GRGCYC	1 cut(s)	51
FspBI	CTAG	5 cut(s)	273, 372, 605, 678, 756
GlaI	GCGC	1 cut(s)	386
GsuI	CTGGAG	1 cut(s)	362
HaeII	RGCGCY	1 cut(s)	388
HaeIII	GGCC	1 cut(s)	26
HapII	CCGG	2 cut(s)	27, 503
HhaI	GCGC	1 cut(s)	387
Hin1I	GRCGYC	1 cut(s)	385
Hin1II	CATG	3 cut(s)	141, 434, 709
Hin6I	GCGC	1 cut(s)	385
HinP1I	GCGC	1 cut(s)	385
HincII	GTYRAC	2 cut(s)	215, 616
HindII	GTYRAC	2 cut(s)	215, 616
HinfI	GANTC	8 cut(s)	58, 68, 97, 295, 434, 448, 487, 769
HpaII	CCGG	2 cut(s)	27, 503
HphI	GGTGA	4 cut(s)	155, 182, 494, 740
Hpy166II	GTNNAC	3 cut(s)	215, 574, 616
Hpy188I	TCNGA	4 cut(s)	57, 73, 102, 120
Hpy188III	TCNNGA	2 cut(s)	341, 426
Hpy8I	GTNNAC	3 cut(s)	215, 574, 616
HpyAV	CCTTC	3 cut(s)	629, 686, 704
HpyCH4III	ACNGT	4 cut(s)	151, 264, 471, 812
HpyCH4V	TGCA	3 cut(s)	189, 267, 670
HpyF10VI	GCNNNNNNNGC	3 cut(s)	264, 391, 752
Hsp92I	GRCGYC	1 cut(s)	385
Hsp92II	CATG	3 cut(s)	141, 434, 709
HspAI	GCGC	1 cut(s)	385
KasI	GGCGCC	1 cut(s)	384
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
Kzo9I	GATC	6 cut(s)	120, 124, 337, 409, 541, 819
LweI	GCATC	4 cut(s)	394, 657, 742, 783
MaeI	CTAG	5 cut(s)	273, 372, 605, 678, 756
MalI	GATC	6 cut(s)	122, 126, 339, 411, 543, 821
MboI	GATC	6 cut(s)	120, 124, 337, 409, 541, 819
MboII	GAAGA	5 cut(s)	411, 413, 743, 780, 823
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	2 cut(s)	355, 592
Mly113I	GGCGCC	1 cut(s)	385
MlyI	GAGTC	2 cut(s)	304, 778
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	6 cut(s)	33, 138, 228, 309, 316, 433
MroNI	GCCGGC	1 cut(s)	26
MroXI	GAANNNNTTC	1 cut(s)	350
MseI	TTAA	1 cut(s)	458
MspI	CCGG	2 cut(s)	27, 503
MspR9I	CCNGG	2 cut(s)	251, 382
MvaI	CCWGG	2 cut(s)	251, 382
MwoI	GCNNNNNNNGC	3 cut(s)	264, 391, 752
NaeI	GCCGGC	1 cut(s)	28
NarI	GGCGCC	1 cut(s)	385
NdeII	GATC	6 cut(s)	120, 124, 337, 409, 541, 819
NgoMIV	GCCGGC	1 cut(s)	26
NlaIII	CATG	3 cut(s)	141, 434, 709
NlaIV	GGNNCC	3 cut(s)	386, 543, 576
NspI	RCATGY	1 cut(s)	141
PaeR7I	CTCGAG	2 cut(s)	300, 424
PciI	ACATGT	1 cut(s)	137
PdiI	GCCGGC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	6 cut(s)	58, 68, 97, 434, 448, 487
PleI	GAGTC	2 cut(s)	303, 777
PluTI	GGCGCC	1 cut(s)	388
PpsI	GAGTC	2 cut(s)	303, 777
PpuMI	RGGWCCY	1 cut(s)	533
PscI	ACATGT	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	51
Psp5II	RGGWCCY	1 cut(s)	533
Psp6I	CCWGG	2 cut(s)	249, 380
PspGI	CCWGG	2 cut(s)	249, 380
PspN4I	GGNNCC	3 cut(s)	386, 543, 576
PspPI	GGNCC	2 cut(s)	533, 574
PspPPI	RGGWCCY	1 cut(s)	533
PspXI	VCTCGAGB	1 cut(s)	300
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	541
SacI	GAGCTC	1 cut(s)	51
SalI	GTCGAC	1 cut(s)	213
SaqAI	TTAA	1 cut(s)	458
Sau3AI	GATC	6 cut(s)	120, 124, 337, 409, 541, 819
Sau96I	GGNCC	2 cut(s)	533, 574
SchI	GAGTC	2 cut(s)	304, 778
ScrFI	CCNGG	2 cut(s)	251, 382
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	6 cut(s)	51, 80, 220, 535, 766, 808
SfaNI	GCATC	4 cut(s)	394, 657, 742, 783
SfoI	GGCGCC	1 cut(s)	386
Sfr274I	CTCGAG	2 cut(s)	300, 424
SinI	GGWCC	2 cut(s)	533, 574
SlaI	CTCGAG	2 cut(s)	300, 424
SmlI	CTYRAG	2 cut(s)	300, 424
SmoI	CTYRAG	2 cut(s)	300, 424
SpeI	ACTAGT	1 cut(s)	677
Sse9I	AATT	2 cut(s)	355, 592
SsiI	CCGC	1 cut(s)	14
SspDI	GGCGCC	1 cut(s)	384
SspMI	CTAG	5 cut(s)	273, 372, 605, 678, 756
SstI	GAGCTC	1 cut(s)	51
StyD4I	CCNGG	2 cut(s)	249, 380
TaaI	ACNGT	4 cut(s)	151, 264, 471, 812
TaqI	TCGA	5 cut(s)	123, 214, 301, 425, 822
TasI	AATT	2 cut(s)	355, 592
TfiI	GAWTC	6 cut(s)	58, 68, 97, 434, 448, 487
Tru1I	TTAA	1 cut(s)	458
Tru9I	TTAA	1 cut(s)	458
TscAI	CASTG	5 cut(s)	172, 269, 395, 567, 721
TspDTI	ATGAA	2 cut(s)	447, 780
TspRI	CASTG	5 cut(s)	172, 269, 395, 567, 721
VpaK11BI	GGWCC	2 cut(s)	533, 574
XapI	RAATTY	1 cut(s)	592
XceI	RCATGY	1 cut(s)	141
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XhoI	CTCGAG	2 cut(s)	300, 424
XmiI	GTMKAC	1 cut(s)	214
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	5 cut(s)	273, 372, 605, 678, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.