Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

10856068 .. 10858970

Gene Structure 2903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGAAAGAGCCTCCTCTGGTTACGGCTAACACTGTTTTGTCCATACTTTCTGTGGATTACCCAGTGGACAAAGTCTCTTGCTATGTGTCTGATGATGGGTCAGCAATGCTAACATTTGAATCCCTTTCTGAAACTGCGGAGTTTGCTAGGAAGTGGGTACCTTTTTGCAAGAAACACAACATTGAACCTAGAGCCCCTGAGTTTTATTTTGCCCAAAAGATTGATTACTTAAAAGACAAGATACAGCCTTCTTTCGTAAAAGAGCGTAGAGCAATGAAGAGAGAGTATGAAGAATTCAAGGTTCGGATCGATGCCCTAGTTGCCAAGGCACAGAAGATGCCTGAAGAAGGTTGGACAATGCAGGATGGGACTCCATGGCCTGGGAACAACCCTAGAGACCATCCAGGAATGATCCAGGTCTTCTTAGGCCACAGTGGTGGCCTTGATACTGATGGCAATGAACTGCCTCGACTTGTTTATGTTTCTCGTGAGAAGCGACCTGGATTCCAACATCACAAGAAAGCTGGAGCAATGAATGCATTGATTCGAGTTTCAGCCGTCCTGACAAACGGTGCATATCTTTTGAACGTTGATTGTGATCGATCTCACTACTTCAATAACAGTAAAGCTCTTAAGGAAGCCATGTGTTTCATGATGGACCCAGCTTATGGGAAGAAGACCTGCTATGTCCAGTTCCCTCAGCGATTTGATGGCATTGATTTGCACGATAGATATGCCAATCGGAACATTGTCTTCTTTGATATCAACTTGAAAGGGCTGGATGGCATCCAGGGTCCAGTCTATGTGGGAACTGGTTGCTGTTTCAACAGACAAGCTCTGTATGGGTACGATCCGGTTTTGACCGAGGAAGATTTGCAGCCAAACATTATTGTCAAGAGTTGTTGTGGTTCAAGAAAGAAGAACAAGACTAGCAATAAGAAGTATATTGACAAGAAGAGGGCGGTCAAAAGAACGGAATCCACCATTCCCATTTTCAATATGGAAGACATTGAGGAGGGTGTTGAAGGTTATGATGATGAGAGGACTCTTCTTATGTCTCAGAAGAGCTTAGAGAAGCGTTTTGGTCAATCACCAGTTTTTATTGCAGCCACCTTCATGGAACAAGGAGGCATTCCACCTACAACCAATCCTGCAACTCTTTTGAAGGAAGCTATACATGTTATTAGCTGTGGATATGAAGACAAGAGTGAATGGGGAAAAGAGATTGGATGGATCTATCCAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009628 GO:0009651 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042538 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098791 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

416

Amino Acids

47.22

Weight (kDa)

7.92

Isoelectric Point (pI)

46.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	2 - 413	9e-222	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	689
Acc65I	GGTACC	1 cut(s)	157
AccB1I	GGYRCC	1 cut(s)	157
AccB7I	CCANNNNNTGG	2 cut(s)	380, 668
AciI	CCGC	2 cut(s)	137, 962
AclI	AACGTT	1 cut(s)	588
AclWI	GGATC	4 cut(s)	314, 406, 845, 1241
AcsI	RAATTY	1 cut(s)	293
AcuI	CTGAAG	1 cut(s)	363
AfaI	GTAC	2 cut(s)	159, 848
AfiI	CCNNNNNNNGG	3 cut(s)	347, 380, 668
AflII	CTTAAG	1 cut(s)	632
AflIII	ACRYGT	1 cut(s)	1177
AjnI	CCWGG	5 cut(s)	379, 403, 414, 499, 789
AleI	CACNNNNGTG	1 cut(s)	435
AluBI	AGCT	7 cut(s)	524, 629, 665, 836, 1068, 1172, 1188
AluI	AGCT	7 cut(s)	524, 629, 665, 836, 1068, 1172, 1188
Alw26I	GTCTC	3 cut(s)	79, 390, 1062
AlwI	GGATC	4 cut(s)	314, 406, 845, 1241
AoxI	GGCC	3 cut(s)	377, 427, 439
ApeKI	GCWGC	2 cut(s)	877, 1106
ApoI	RAATTY	1 cut(s)	293
Asp718I	GGTACC	1 cut(s)	157
AspS9I	GGNCC	2 cut(s)	658, 794
AsuHPI	GGTGA	1 cut(s)	1083
AvaII	GGWCC	2 cut(s)	658, 794
BanI	GGYRCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	196
BauI	CACGAG	1 cut(s)	486
BbsI	GAAGAC	5 cut(s)	412, 683, 745, 1011, 1206
BbvCI	CCTCAGC	1 cut(s)	699
BbvI	GCAGC	2 cut(s)	889, 1118
BccI	CCATC	8 cut(s)	89, 359, 408, 446, 649, 704, 776, 1224
BceAI	ACGGC	2 cut(s)	39, 542
BcgI	CGANNNNNNTGC	2 cut(s)	716, 750
BciT130I	CCWGG	5 cut(s)	381, 405, 416, 501, 791
BcoDI	GTCTC	3 cut(s)	79, 390, 1062
BfaI	CTAG	5 cut(s)	147, 189, 317, 393, 930
BfrI	CTTAAG	1 cut(s)	632
BfuAI	ACCTGC	1 cut(s)	689
BisI	GCNGC	2 cut(s)	878, 1107
BlsI	GCNGC	2 cut(s)	879, 1108
Bme1390I	CCNGG	5 cut(s)	381, 405, 416, 501, 791
Bme18I	GGWCC	2 cut(s)	658, 794
BmgT120I	GGNCC	2 cut(s)	658, 794
BmiI	GGNNCC	3 cut(s)	159, 660, 795
BmrFI	CCNGG	5 cut(s)	381, 405, 416, 501, 791
BmrI	ACTGGG	1 cut(s)	56
BmsI	GCATC	3 cut(s)	301, 327, 795
BmuI	ACTGGG	1 cut(s)	56
BpiI	GAAGAC	5 cut(s)	412, 683, 745, 1011, 1206
BpmI	CTGGAG	1 cut(s)	546
Bpu10I	CCTNAGC	1 cut(s)	699
Bsa29I	ATCGAT	2 cut(s)	309, 601
BsaBI	GATNNNNATC	1 cut(s)	597
BsaI	GGTCTC	1 cut(s)	390
BsaJI	CCNNGG	6 cut(s)	324, 374, 380, 790, 864, 1241
BsaWI	WCCGGW	1 cut(s)	853
Bsc4I	CCNNNNNNNGG	3 cut(s)	347, 380, 668
Bse1I	ACTGG	5 cut(s)	62, 691, 797, 817, 1094
Bse3DI	GCAATG	4 cut(s)	111, 279, 463, 537
Bse8I	GATNNNNATC	1 cut(s)	597
BseBI	CCWGG	5 cut(s)	381, 405, 416, 501, 791
BseCI	ATCGAT	2 cut(s)	309, 601
BseDI	CCNNGG	6 cut(s)	324, 374, 380, 790, 864, 1241
BseGI	GGATG	5 cut(s)	370, 400, 786, 787, 1235
BseJI	GATNNNNATC	1 cut(s)	597
BseLI	CCNNNNNNNGG	3 cut(s)	347, 380, 668
BseMI	GCAATG	4 cut(s)	111, 279, 463, 537
BseMII	CTCAG	3 cut(s)	189, 713, 1073
BseNI	ACTGG	5 cut(s)	62, 691, 797, 817, 1094
BseRI	GAGGAG	1 cut(s)	1028
BseXI	GCAGC	2 cut(s)	889, 1118
BseYI	CCCAGC	1 cut(s)	661
BshFI	GGCC	3 cut(s)	379, 429, 441
BshNI	GGYRCC	1 cut(s)	157
BshVI	ATCGAT	2 cut(s)	309, 601
BsiSI	CCGG	1 cut(s)	854
BslFI	GGGAC	1 cut(s)	382
BslI	CCNNNNNNNGG	3 cut(s)	347, 380, 668
BsmAI	GTCTC	3 cut(s)	79, 390, 1062
BsmFI	GGGAC	1 cut(s)	382
BsmI	GAATGC	2 cut(s)	541, 1131
BsnI	GGCC	3 cut(s)	379, 429, 441
Bso31I	GGTCTC	1 cut(s)	390
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	6 cut(s)	306, 411, 598, 602, 850, 1233
Bsp19I	CCATGG	1 cut(s)	374
BspACI	CCGC	2 cut(s)	137, 962
BspANI	GGCC	3 cut(s)	379, 429, 441
BspCNI	CTCAG	3 cut(s)	190, 712, 1072
BspDI	ATCGAT	2 cut(s)	309, 601
BspHI	TCATGA	1 cut(s)	651
BspLI	GGNNCC	3 cut(s)	159, 660, 795
BspMI	ACCTGC	1 cut(s)	689
BspPI	GGATC	4 cut(s)	314, 406, 845, 1241
BspQI	GCTCTTC	1 cut(s)	1058
BspT107I	GGYRCC	1 cut(s)	157
BspTI	CTTAAG	1 cut(s)	632
BspTNI	GGTCTC	1 cut(s)	390
BsrDI	GCAATG	4 cut(s)	111, 279, 463, 537
BsrI	ACTGG	5 cut(s)	62, 691, 797, 817, 1094
BssECI	CCNNGG	6 cut(s)	324, 374, 380, 790, 864, 1241
BssMI	GATC	6 cut(s)	306, 411, 598, 602, 850, 1233
BssSI	CACGAG	1 cut(s)	486
BssT1I	CCWWGG	3 cut(s)	324, 374, 1241
Bst2BI	CACGAG	1 cut(s)	486
Bst2UI	CCWGG	5 cut(s)	381, 405, 416, 501, 791
Bst4CI	ACNGT	4 cut(s)	34, 434, 572, 623
Bst6I	CTCTTC	4 cut(s)	272, 950, 1053, 1058
BstAFI	CTTAAG	1 cut(s)	632
BstAPI	GCANNNNNTGC	1 cut(s)	536
BstDEI	CTNAG	5 cut(s)	198, 424, 699, 1059, 1069
BstDSI	CCRYGG	1 cut(s)	374
BstENI	CCTNNNNNAGG	1 cut(s)	345
BstF5I	GGATG	5 cut(s)	370, 400, 786, 787, 1235
BstKTI	GATC	6 cut(s)	309, 414, 601, 605, 853, 1236
BstMAI	GTCTC	3 cut(s)	79, 390, 1062
BstMBI	GATC	6 cut(s)	306, 411, 598, 602, 850, 1233
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 320, 536
BstNI	CCWGG	5 cut(s)	381, 405, 416, 501, 791
BstNSI	RCATGY	1 cut(s)	1181
BstSCI	CCNGG	5 cut(s)	379, 403, 414, 499, 789
BstV1I	GCAGC	2 cut(s)	889, 1118
BstV2I	GAAGAC	5 cut(s)	412, 683, 745, 1011, 1206
BstX2I	RGATCY	1 cut(s)	1233
BstXI	CCANNNNNNTGG	2 cut(s)	437, 1117
BstYI	RGATCY	1 cut(s)	1233
Bsu15I	ATCGAT	2 cut(s)	309, 601
BsuRI	GGCC	3 cut(s)	379, 429, 441
BsuTUI	ATCGAT	2 cut(s)	309, 601
BtgI	CCRYGG	1 cut(s)	374
BtsCI	GGATG	5 cut(s)	370, 400, 786, 787, 1235
BtsIMutI	CAGTG	3 cut(s)	30, 69, 439
BveI	ACCTGC	1 cut(s)	689
CciI	TCATGA	1 cut(s)	651
Cfr13I	GGNCC	2 cut(s)	658, 794
ClaI	ATCGAT	2 cut(s)	309, 601
Csp6I	GTAC	2 cut(s)	158, 847
CviAII	CATG	5 cut(s)	375, 643, 652, 1117, 1178
CviQI	GTAC	2 cut(s)	158, 847
DdeI	CTNAG	5 cut(s)	198, 424, 699, 1059, 1069
DpnI	GATC	6 cut(s)	308, 413, 600, 604, 852, 1235
DpnII	GATC	6 cut(s)	306, 411, 598, 602, 850, 1233
Eam1104I	CTCTTC	4 cut(s)	272, 950, 1053, 1058
EarI	CTCTTC	4 cut(s)	272, 950, 1053, 1058
Eco130I	CCWWGG	3 cut(s)	324, 374, 1241
Eco24I	GRGCYC	1 cut(s)	196
Eco31I	GGTCTC	1 cut(s)	390
Eco32I	GATATC	1 cut(s)	763
Eco47I	GGWCC	2 cut(s)	658, 794
Eco57I	CTGAAG	1 cut(s)	363
EcoNI	CCTNNNNNAGG	1 cut(s)	345
EcoRI	GAATTC	1 cut(s)	293
EcoRII	CCWGG	5 cut(s)	379, 403, 414, 499, 789
EcoRV	GATATC	1 cut(s)	763
EcoT14I	CCWWGG	3 cut(s)	324, 374, 1241
EcoT22I	ATGCAT	1 cut(s)	541
EcoT38I	GRGCYC	1 cut(s)	196
ErhI	CCWWGG	3 cut(s)	324, 374, 1241
FaeI	CATG	5 cut(s)	378, 646, 655, 1120, 1181
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	5 cut(s)	374, 642, 651, 1116, 1177
Fnu4HI	GCNGC	2 cut(s)	878, 1107
FokI	GGATG	5 cut(s)	377, 387, 773, 794, 1242
FriOI	GRGCYC	1 cut(s)	196
Fsp4HI	GCNGC	2 cut(s)	878, 1107
FspBI	CTAG	5 cut(s)	147, 189, 317, 393, 930
GluI	GCNGC	2 cut(s)	878, 1107
GsaI	CCCAGC	1 cut(s)	665
GsuI	CTGGAG	1 cut(s)	546
HaeIII	GGCC	3 cut(s)	379, 429, 441
HapII	CCGG	1 cut(s)	854
Hin1II	CATG	5 cut(s)	378, 646, 655, 1120, 1181
HinfI	GANTC	6 cut(s)	119, 370, 504, 544, 977, 1045
HpaII	CCGG	1 cut(s)	854
HphI	GGTGA	1 cut(s)	1083
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	5 cut(s)	91, 130, 306, 744, 1062
Hpy188III	TCNNGA	5 cut(s)	488, 562, 652, 895, 912
Hpy8I	GTNNAC	1 cut(s)	67
HpyAV	CCTTC	5 cut(s)	258, 341, 1019, 1123, 1159
HpyCH4III	ACNGT	4 cut(s)	34, 434, 572, 623
HpyCH4IV	ACGT	1 cut(s)	588
HpyCH4V	TGCA	8 cut(s)	168, 361, 539, 575, 724, 877, 1106, 1154
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 320, 536
HpyF3I	CTNAG	5 cut(s)	198, 424, 699, 1059, 1069
HpySE526I	ACGT	1 cut(s)	588
Hsp92II	CATG	5 cut(s)	378, 646, 655, 1120, 1181
KpnI	GGTACC	1 cut(s)	161
Kzo9I	GATC	6 cut(s)	306, 411, 598, 602, 850, 1233
LguI	GCTCTTC	1 cut(s)	1058
LmnI	GCTCC	1 cut(s)	527
Lsp1109I	GCAGC	2 cut(s)	889, 1118
LweI	GCATC	3 cut(s)	301, 327, 795
MaeI	CTAG	5 cut(s)	147, 189, 317, 393, 930
MaeII	ACGT	1 cut(s)	588
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	6 cut(s)	308, 413, 600, 604, 852, 1235
MboI	GATC	6 cut(s)	306, 411, 598, 602, 850, 1233
MflI	RGATCY	1 cut(s)	1233
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	1 cut(s)	293
MlyI	GAGTC	2 cut(s)	364, 1039
MmeI	TCCRAC	2 cut(s)	332, 532
Mph1103I	ATGCAT	1 cut(s)	541
MseI	TTAA	2 cut(s)	230, 633
MslI	CAYNNNNRTG	2 cut(s)	435, 1115
MspCI	CTTAAG	1 cut(s)	632
MspI	CCGG	1 cut(s)	854
MspR9I	CCNGG	5 cut(s)	381, 405, 416, 501, 791
Mva1269I	GAATGC	2 cut(s)	541, 1131
MvaI	CCWGG	5 cut(s)	381, 405, 416, 501, 791
MwoI	GCNNNNNNNGC	3 cut(s)	143, 320, 536
NcoI	CCATGG	1 cut(s)	374
NdeII	GATC	6 cut(s)	306, 411, 598, 602, 850, 1233
NlaIII	CATG	5 cut(s)	378, 646, 655, 1120, 1181
NlaIV	GGNNCC	3 cut(s)	159, 660, 795
NsiI	ATGCAT	1 cut(s)	541
NspI	RCATGY	1 cut(s)	1181
OliI	CACNNNNGTG	1 cut(s)	435
PagI	TCATGA	1 cut(s)	651
PciI	ACATGT	1 cut(s)	1177
PciSI	GCTCTTC	1 cut(s)	1058
PcsI	WCGNNNNNNNCGW	1 cut(s)	493
PctI	GAATGC	2 cut(s)	541, 1131
PfeI	GAWTC	4 cut(s)	119, 504, 544, 977
PflFI	GACNNNGTC	1 cut(s)	71
PflMI	CCANNNNNTGG	2 cut(s)	380, 668
PfoI	TCCNGGA	1 cut(s)	403
PkrI	GCNGC	2 cut(s)	879, 1108
PleI	GAGTC	2 cut(s)	364, 1039
PpsI	GAGTC	2 cut(s)	364, 1039
PscI	ACATGT	1 cut(s)	1177
Psp1406I	AACGTT	1 cut(s)	588
Psp6I	CCWGG	5 cut(s)	379, 403, 414, 499, 789
PspFI	CCCAGC	1 cut(s)	661
PspGI	CCWGG	5 cut(s)	379, 403, 414, 499, 789
PspN4I	GGNNCC	3 cut(s)	159, 660, 795
PspPI	GGNCC	2 cut(s)	658, 794
PsuI	RGATCY	1 cut(s)	1233
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	2 cut(s)	159, 848
RsaNI	GTAC	2 cut(s)	158, 847
RseI	CAYNNNNRTG	2 cut(s)	435, 1115
SapI	GCTCTTC	1 cut(s)	1058
SaqAI	TTAA	2 cut(s)	230, 633
SatI	GCNGC	2 cut(s)	878, 1107
Sau3AI	GATC	6 cut(s)	306, 411, 598, 602, 850, 1233
Sau96I	GGNCC	2 cut(s)	658, 794
SchI	GAGTC	2 cut(s)	364, 1039
ScrFI	CCNGG	5 cut(s)	381, 405, 416, 501, 791
SduI	GDGCHC	1 cut(s)	196
SfaNI	GCATC	3 cut(s)	301, 327, 795
SinI	GGWCC	2 cut(s)	658, 794
SmiMI	CAYNNNNRTG	2 cut(s)	435, 1115
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
Sse9I	AATT	1 cut(s)	293
SsiI	CCGC	2 cut(s)	137, 962
SspMI	CTAG	5 cut(s)	147, 189, 317, 393, 930
StyD4I	CCNGG	5 cut(s)	379, 403, 414, 499, 789
StyI	CCWWGG	3 cut(s)	324, 374, 1241
TaaI	ACNGT	4 cut(s)	34, 434, 572, 623
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	4 cut(s)	309, 469, 547, 601
TaqII	GACCGA	1 cut(s)	878
TasI	AATT	1 cut(s)	293
TfiI	GAWTC	4 cut(s)	119, 504, 544, 977
Tru1I	TTAA	2 cut(s)	230, 633
Tru9I	TTAA	2 cut(s)	230, 633
TscAI	CASTG	3 cut(s)	37, 69, 439
TseI	GCWGC	2 cut(s)	877, 1106
TspDTI	ATGAA	8 cut(s)	17, 290, 303, 474, 548, 640, 1105, 1212
TspGWI	ACGGA	1 cut(s)	989
TspRI	CASTG	3 cut(s)	37, 69, 439
Tth111I	GACNNNGTC	1 cut(s)	71
Van91I	CCANNNNNTGG	2 cut(s)	380, 668
Vha464I	CTTAAG	1 cut(s)	632
VpaK11BI	GGWCC	2 cut(s)	658, 794
XagI	CCTNNNNNAGG	1 cut(s)	345
XapI	RAATTY	1 cut(s)	293
XceI	RCATGY	1 cut(s)	1181
XcmI	CCANNNNNNNNNTGG	2 cut(s)	49, 997
XspI	CTAG	5 cut(s)	147, 189, 317, 393, 930
Zsp2I	ATGCAT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.