pycom08g12520

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Reverse (-)
10988782 .. 10989213
432 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 432 bp
ATGGTCAATTCCACAATGAAAACTGAGGAGCAGGCAGCTAGTTTTGGTGCAGAAAGTTCACAAACTAGCGAATCAGCTAAATTACCAACATCTTGTGATTCAACTTCATTACTGGAAGTGCAAAGACTATCTATACTACACCCTTCTACTAGGCTCCATCTGGTACATCAATATGCACAAGTTCTTGCAGACATGTTGCAGGAAAAGTATAATGCAGGATTATTTCTAGAATTTTTTGTTCAACTTGTTGTTTTGGCCATATGGGAGAAATATATTCAAACTGCTGCACATGAATTCAGAGGATATTTTGTGTCTTGCTTATGCAATGGTGGCGATATATTTGATATTCAATTGGGCTACCATATGGGCATTTGTGATAAGGGAGGTGGCACCAGCAACCTCACTCTCCAATTGCAGGGAATACTACACTAA

Protein Analysis

144

Amino Acids

15.83

Weight (kDa)

5.37

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIT_ATG1 PF24497 34 - 94 3.1e-18 ATG1, MIT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 389
AcoI YGGCCR 1 cut(s) 255
AcsI RAATTY 2 cut(s) 230, 293
AfaI GTAC 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 415
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 4 cut(s) 102, 242, 278, 350
AluBI AGCT 2 cut(s) 38, 77
AluI AGCT 2 cut(s) 38, 77
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 2 cut(s) 35, 284
ApoI RAATTY 2 cut(s) 230, 293
BalI TGGCCA 1 cut(s) 257
BanI GGYRCC 1 cut(s) 389
BbvI GCAGC 2 cut(s) 47, 271
BccI CCATC 1 cut(s) 165
BfaI CTAG 4 cut(s) 39, 66, 150, 227
BisI GCNGC 2 cut(s) 36, 285
BlsI GCNGC 2 cut(s) 37, 286
BmiI GGNNCC 2 cut(s) 155, 391
Bsc4I CCNNNNNNNGG 1 cut(s) 415
Bse1I ACTGG 1 cut(s) 117
Bse3DI GCAATG 1 cut(s) 331
BseLI CCNNNNNNNGG 1 cut(s) 415
BseMI GCAATG 1 cut(s) 331
BseMII CTCAG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 117
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 2 cut(s) 47, 271
BsgI GTGCAG 2 cut(s) 69, 270
BshFI GGCC 1 cut(s) 257
BshNI GGYRCC 1 cut(s) 389
BslI CCNNNNNNNGG 1 cut(s) 415
BsnI GGCC 1 cut(s) 257
BspANI GGCC 1 cut(s) 257
BspCNI CTCAG 1 cut(s) 16
BspLI GGNNCC 2 cut(s) 155, 391
BspT107I GGYRCC 1 cut(s) 389
BsrDI GCAATG 1 cut(s) 331
BsrI ACTGG 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 24
BstMWI GCNNNNNNNGC 1 cut(s) 330
BstNSI RCATGY 1 cut(s) 196
BstV1I GCAGC 2 cut(s) 47, 271
BsuRI GGCC 1 cut(s) 257
Cac8I GCNNGC 1 cut(s) 33
Csp6I GTAC 1 cut(s) 164
CviAII CATG 2 cut(s) 193, 290
CviJI RGCY 5 cut(s) 38, 77, 154, 257, 357
CviKI_1 RGCY 5 cut(s) 38, 77, 154, 257, 357
CviQI GTAC 1 cut(s) 164
DdeI CTNAG 1 cut(s) 24
EaeI YGGCCR 1 cut(s) 255
EcoRI GAATTC 1 cut(s) 293
FaeI CATG 2 cut(s) 196, 293
FatI CATG 2 cut(s) 192, 289
FauNDI CATATG 2 cut(s) 260, 363
Fnu4HI GCNGC 2 cut(s) 36, 285
Fsp4HI GCNGC 2 cut(s) 36, 285
FspBI CTAG 4 cut(s) 39, 66, 150, 227
GluI GCNGC 2 cut(s) 36, 285
HaeIII GGCC 1 cut(s) 257
Hin1II CATG 2 cut(s) 196, 293
HinfI GANTC 2 cut(s) 71, 98
Hpy166II GTNNAC 1 cut(s) 59
Hpy188I TCNGA 1 cut(s) 299
Hpy188III TCNNGA 1 cut(s) 227
Hpy8I GTNNAC 1 cut(s) 59
HpyAV CCTTC 1 cut(s) 153
HpyCH4V TGCA 9 cut(s) 50, 121, 176, 188, 199, 215, 287, 324, 415
HpyF10VI GCNNNNNNNGC 1 cut(s) 330
HpyF3I CTNAG 1 cut(s) 24
Hsp92II CATG 2 cut(s) 196, 293
LmnI GCTCC 2 cut(s) 28, 159
LpnPI CCDG 7 cut(s) 17, 98, 146, 185, 201, 401, 406
Lsp1109I GCAGC 2 cut(s) 47, 271
MaeI CTAG 4 cut(s) 39, 66, 150, 227
MfeI CAATTG 2 cut(s) 350, 410
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 6 cut(s) 7, 80, 230, 293, 350, 410
MluNI TGGCCA 1 cut(s) 257
MnlI CCTC 4 cut(s) 19, 293, 377, 410
Mox20I TGGCCA 1 cut(s) 257
MscI TGGCCA 1 cut(s) 257
MslI CAYNNNNRTG 1 cut(s) 171
Msp20I TGGCCA 1 cut(s) 257
MunI CAATTG 2 cut(s) 350, 410
MwoI GCNNNNNNNGC 1 cut(s) 330
NdeI CATATG 2 cut(s) 260, 363
NlaIII CATG 2 cut(s) 196, 293
NlaIV GGNNCC 2 cut(s) 155, 391
NspI RCATGY 1 cut(s) 196
PciI ACATGT 1 cut(s) 192
PfeI GAWTC 2 cut(s) 71, 98
PkrI GCNGC 2 cut(s) 37, 286
PscI ACATGT 1 cut(s) 192
PspN4I GGNNCC 2 cut(s) 155, 391
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
RseI CAYNNNNRTG 1 cut(s) 171
SatI GCNGC 2 cut(s) 36, 285
SetI ASST 4 cut(s) 40, 79, 388, 402
SmiMI CAYNNNNRTG 1 cut(s) 171
Sse9I AATT 6 cut(s) 7, 80, 230, 293, 350, 410
SspMI CTAG 4 cut(s) 39, 66, 150, 227
TasI AATT 6 cut(s) 7, 80, 230, 293, 350, 410
TfiI GAWTC 2 cut(s) 71, 98
TseI GCWGC 2 cut(s) 35, 284
TspDTI ATGAA 3 cut(s) 32, 96, 306
XapI RAATTY 2 cut(s) 230, 293
XbaI TCTAGA 1 cut(s) 226
XceI RCATGY 1 cut(s) 196
XspI CTAG 4 cut(s) 39, 66, 150, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.