Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

11079913 .. 11080266

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCTGGCCTACATGGTTGGACTCTGGAAGTCCTAAACCTTGAAGGCTGTAGAATGGTCAGCGATGCGGGCTTGGCAGCTATTGCAGGGAACTGCACATTGCTTAGTGATCTTGACGTCTCAAGGTGTGCAATCACTGATTTTGGAATTGCATCCCTAGCCCGTGCAGACCAGCTAAACCTGCAGATCCTCTCCGTATCTGGGTGCCCTTTAGTATCCGACAAGAGTTTGCCTGCCTTGGTGAAAATGGGTCAGACCCTTCATGGTTTGAATCTTCAGCATTGCAACGCAATCAGCAGCAGCACTGTTGACCGGCTTGTGCAGCAGCTGTGGCGTTGTGATATCCTTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009723 GO:0009725 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0019005 GO:0019538 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031461 GO:0032991 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0065007 GO:0070297 GO:0070298 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1902531 GO:1902532 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

118

Amino Acids

12.41

Weight (kDa)

5.36

Isoelectric Point (pI)

32.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7885	PF25372	8 - 109	5.1e-11	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	120
Acc36I	ACCTGC	1 cut(s)	189
AccB1I	GGYRCC	1 cut(s)	204
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	260
AcyI	GRCGYC	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	201
AgsI	TTSAA	2 cut(s)	44, 271
AluBI	AGCT	3 cut(s)	80, 175, 328
AluI	AGCT	3 cut(s)	80, 175, 328
Alw26I	GTCTC	1 cut(s)	124
AlwI	GGATC	1 cut(s)	181
AlwNI	CAGNNNCTG	1 cut(s)	328
AoxI	GGCC	1 cut(s)	7
ApeKI	GCWGC	5 cut(s)	77, 297, 300, 322, 325
AsuHPI	GGTGA	1 cut(s)	253
BaeGI	GKGCMC	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	204
BbvI	GCAGC	5 cut(s)	89, 309, 312, 334, 337
BciVI	GTATCC	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	124
BfaI	CTAG	2 cut(s)	158, 352
BfmI	CTRYAG	2 cut(s)	49, 182
BfuAI	ACCTGC	1 cut(s)	189
BfuI	GTATCC	1 cut(s)	226
BisI	GCNGC	5 cut(s)	78, 298, 301, 323, 326
BlsI	GCNGC	5 cut(s)	79, 299, 302, 324, 327
BmiI	GGNNCC	1 cut(s)	206
BmsI	GCATC	2 cut(s)	55, 161
BpuEI	CTTGAG	1 cut(s)	106
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse118I	RCCGGY	1 cut(s)	312
Bse3DI	GCAATG	2 cut(s)	98, 280
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	152
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMI	GCAATG	2 cut(s)	98, 280
BseSI	GKGCMC	1 cut(s)	209
BseXI	GCAGC	5 cut(s)	89, 309, 312, 334, 337
BsgI	GTGCAG	3 cut(s)	79, 186, 341
BshFI	GGCC	1 cut(s)	9
BshNI	GGYRCC	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	124
BsmBI	CGTCTC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	209
Bsp143I	GATC	2 cut(s)	109, 186
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	206
BspMAI	CTGCAG	1 cut(s)	186
BspMI	ACCTGC	1 cut(s)	189
BspPI	GGATC	1 cut(s)	181
BspT107I	GGYRCC	1 cut(s)	204
BsrDI	GCAATG	2 cut(s)	98, 280
BsrFI	RCCGGY	1 cut(s)	312
BssAI	RCCGGY	1 cut(s)	312
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	2 cut(s)	109, 186
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	307
BstACI	GRCGYC	1 cut(s)	117
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstC8I	GCNNGC	3 cut(s)	7, 70, 234
BstDEI	CTNAG	1 cut(s)	104
BstF5I	GGATG	1 cut(s)	152
BstKTI	GATC	2 cut(s)	112, 189
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	2 cut(s)	109, 186
BstMWI	GCNNNNNNNGC	7 cut(s)	69, 74, 83, 158, 181, 322, 331
BstSFI	CTRYAG	2 cut(s)	49, 182
BstSLI	GKGCMC	1 cut(s)	209
BstV1I	GCAGC	5 cut(s)	89, 309, 312, 334, 337
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
BsuI	GTATCC	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	9
BtgZI	GCGATG	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	152
BtsIMutI	CAGTG	2 cut(s)	135, 303
BveI	ACCTGC	1 cut(s)	189
Cac8I	GCNNGC	3 cut(s)	7, 70, 234
CaiI	CAGNNNCTG	1 cut(s)	328
Cfr10I	RCCGGY	1 cut(s)	312
CviAII	CATG	2 cut(s)	14, 263
CviJI	RGCY	9 cut(s)	5, 9, 48, 72, 80, 161, 175, 316, 328
CviKI_1	RGCY	9 cut(s)	5, 9, 48, 72, 80, 161, 175, 316, 328
DdeI	CTNAG	1 cut(s)	104
DpnI	GATC	2 cut(s)	111, 188
DpnII	GATC	2 cut(s)	109, 186
Eco130I	CCWWGG	1 cut(s)	237
Eco32I	GATATC	1 cut(s)	343
Eco57I	CTGAAG	1 cut(s)	260
EcoRV	GATATC	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	237
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	2 cut(s)	17, 266
FaiI	YATR	2 cut(s)	15, 264
FatI	CATG	2 cut(s)	13, 262
FauI	CCCGC	1 cut(s)	61
Fnu4HI	GCNGC	5 cut(s)	78, 298, 301, 323, 326
FokI	GGATG	1 cut(s)	139
Fsp4HI	GCNGC	5 cut(s)	78, 298, 301, 323, 326
FspBI	CTAG	2 cut(s)	158, 352
GluI	GCNGC	5 cut(s)	78, 298, 301, 323, 326
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	1 cut(s)	313
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	17, 266
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	2 cut(s)	22, 271
HpaII	CCGG	1 cut(s)	313
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	2 cut(s)	220, 255
Hpy188III	TCNNGA	2 cut(s)	26, 113
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	2 cut(s)	38, 269
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	8 cut(s)	86, 96, 131, 152, 167, 184, 285, 322
HpyF10VI	GCNNNNNNNGC	7 cut(s)	69, 74, 83, 158, 181, 322, 331
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	1 cut(s)	117
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	2 cut(s)	17, 266
Kzo9I	GATC	2 cut(s)	109, 186
LpnPI	CCDG	7 cut(s)	11, 72, 185, 186, 194, 246, 326
Lsp1109I	GCAGC	5 cut(s)	89, 309, 312, 334, 337
LweI	GCATC	2 cut(s)	55, 161
MaeI	CTAG	2 cut(s)	158, 352
MaeII	ACGT	1 cut(s)	117
MalI	GATC	2 cut(s)	111, 188
MboI	GATC	2 cut(s)	109, 186
MboII	GAAGA	1 cut(s)	266
MflI	RGATCY	1 cut(s)	186
MhlI	GDGCHC	1 cut(s)	209
MluCI	AATT	1 cut(s)	147
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	1 cut(s)	200
MspA1I	CMGCKG	1 cut(s)	328
MspI	CCGG	1 cut(s)	313
MwoI	GCNNNNNNNGC	7 cut(s)	69, 74, 83, 158, 181, 322, 331
NdeII	GATC	2 cut(s)	109, 186
NlaIII	CATG	2 cut(s)	17, 266
NlaIV	GGNNCC	1 cut(s)	206
PfeI	GAWTC	1 cut(s)	271
PkrI	GCNGC	5 cut(s)	79, 299, 302, 324, 327
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	206
PstI	CTGCAG	1 cut(s)	186
PstNI	CAGNNNCTG	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	186
PvuII	CAGCTG	1 cut(s)	328
SatI	GCNGC	5 cut(s)	78, 298, 301, 323, 326
Sau3AI	GATC	2 cut(s)	109, 186
SchI	GAGTC	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	209
SetI	ASST	7 cut(s)	42, 82, 120, 128, 177, 183, 330
SfaNI	GCATC	2 cut(s)	55, 161
SfcI	CTRYAG	2 cut(s)	49, 182
SmlI	CTYRAG	1 cut(s)	121
SmoI	CTYRAG	1 cut(s)	121
Sse9I	AATT	1 cut(s)	147
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	2 cut(s)	158, 352
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	1 cut(s)	120
TasI	AATT	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	271
TscAI	CASTG	2 cut(s)	142, 310
TseI	GCWGC	5 cut(s)	77, 297, 300, 322, 325
TspDTI	ATGAA	1 cut(s)	251
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	2 cut(s)	142, 310
XspI	CTAG	2 cut(s)	158, 352
ZraI	GACGTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.