pycom08g12720

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Reverse (-)
11267782 .. 11268058
277 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 204 bp
ATGGTTTTTGAATACGCTCCGAATGGTACACTTTTTGAGCATTTGCACAGTGAGTATATAGCTACATTCTCTCAAATGTATGTGTTTGTGCTAATTATAATCGCAATGGGCATGGCCTACTGCCTCGAGTATATGCACCAGCTTAACCCGCCTATAGCCCACAACAACTTGAATTCAGGATCCCTCCAGCTAACAGAGGATTAA

Protein Analysis

68

Amino Acids

7.68

Weight (kDa)

4.75

Isoelectric Point (pI)

57.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 98
AciI CCGC 1 cut(s) 149
AclWI GGATC 2 cut(s) 174, 187
AcsI RAATTY 1 cut(s) 172
AfaI GTAC 1 cut(s) 28
AgsI TTSAA 2 cut(s) 11, 172
AluBI AGCT 3 cut(s) 62, 142, 190
AluI AGCT 3 cut(s) 62, 142, 190
AlwI GGATC 2 cut(s) 174, 187
Ama87I CYCGRG 1 cut(s) 125
AoxI GGCC 1 cut(s) 114
ApoI RAATTY 1 cut(s) 172
AvaI CYCGRG 1 cut(s) 125
BamHI GGATCC 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 170
Bse3DI GCAATG 1 cut(s) 111
BseMI GCAATG 1 cut(s) 111
BshFI GGCC 1 cut(s) 116
BsiHKCI CYCGRG 1 cut(s) 125
BsnI GGCC 1 cut(s) 116
BsoBI CYCGRG 1 cut(s) 125
Bsp143I GATC 1 cut(s) 179
BspACI CCGC 1 cut(s) 149
BspANI GGCC 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 181
BspPI GGATC 2 cut(s) 174, 187
BsrDI GCAATG 1 cut(s) 111
BssMI GATC 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 50
BstKTI GATC 1 cut(s) 182
BstMBI GATC 1 cut(s) 179
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstSFI CTRYAG 1 cut(s) 153
BstX2I RGATCY 1 cut(s) 179
BstYI RGATCY 1 cut(s) 179
BsuRI GGCC 1 cut(s) 116
BtsIMutI CAGTG 1 cut(s) 55
Csp6I GTAC 1 cut(s) 27
CviAII CATG 1 cut(s) 112
CviJI RGCY 5 cut(s) 62, 116, 142, 158, 190
CviKI_1 RGCY 5 cut(s) 62, 116, 142, 158, 190
CviQI GTAC 1 cut(s) 27
DpnI GATC 1 cut(s) 181
DpnII GATC 1 cut(s) 179
Eco88I CYCGRG 1 cut(s) 125
EcoRI GAATTC 1 cut(s) 172
FaeI CATG 1 cut(s) 115
FaiI YATR 8 cut(s) 57, 59, 81, 98, 113, 132, 134, 155
FatI CATG 1 cut(s) 111
FauI CCCGC 1 cut(s) 156
GsuI CTGGAG 1 cut(s) 170
HaeIII GGCC 1 cut(s) 116
Hin1II CATG 1 cut(s) 115
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 1 cut(s) 177
Hpy8I GTNNAC 1 cut(s) 29
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4V TGCA 2 cut(s) 46, 136
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
Hsp92II CATG 1 cut(s) 115
Kzo9I GATC 1 cut(s) 179
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 3 cut(s) 152, 162, 200
MalI GATC 1 cut(s) 181
MboI GATC 1 cut(s) 179
MflI RGATCY 1 cut(s) 179
MluCI AATT 2 cut(s) 93, 172
MnlI CCTC 3 cut(s) 134, 190, 194
MseI TTAA 2 cut(s) 144, 202
MwoI GCNNNNNNNGC 1 cut(s) 148
NdeII GATC 1 cut(s) 179
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 1 cut(s) 181
PaeR7I CTCGAG 1 cut(s) 125
PsiI TTATAA 1 cut(s) 98
PspN4I GGNNCC 1 cut(s) 181
PspXI VCTCGAGB 1 cut(s) 125
PsuI RGATCY 1 cut(s) 179
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
SaqAI TTAA 2 cut(s) 144, 202
Sau3AI GATC 1 cut(s) 179
SetI ASST 3 cut(s) 64, 144, 192
SfcI CTRYAG 1 cut(s) 153
Sfr274I CTCGAG 1 cut(s) 125
SgeI CNNG 8 cut(s) 124, 137, 139, 151, 160, 181, 189, 199
SlaI CTCGAG 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 2 cut(s) 93, 172
SsiI CCGC 1 cut(s) 149
TaaI ACNGT 1 cut(s) 50
TaqI TCGA 1 cut(s) 126
TasI AATT 2 cut(s) 93, 172
Tru1I TTAA 2 cut(s) 144, 202
Tru9I TTAA 2 cut(s) 144, 202
TscAI CASTG 1 cut(s) 55
TspRI CASTG 1 cut(s) 55
XapI RAATTY 1 cut(s) 172
XhoI CTCGAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.