pycom08g12960

Encoded by

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Reverse (-)
11546186 .. 11546471
286 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 189 bp
ATGCATGCAGAAGTGGAGAGAAAAGAAACTACGAACTCAATCTCATGCATGATGCGTGGCAGTCTGAATATGTCTGAGGAATCTGCTCTTGAACAAAGATGCAGCTTCTGCTTCTCCATTTACCAAGGAATTTGTAAAAGCAGCAATAAACCTTGCTCGGATTTCCCAATGCATATACCAATATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

63

Amino Acids

7.11

Weight (kDa)

6.03

Isoelectric Point (pI)

65.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 129
AgsI TTSAA 1 cut(s) 92
AluBI AGCT 1 cut(s) 105
AluI AGCT 1 cut(s) 105
AlwNI CAGNNNCTG 1 cut(s) 108
ApeKI GCWGC 2 cut(s) 102, 141
ApoI RAATTY 1 cut(s) 129
BbvI GCAGC 2 cut(s) 114, 153
BisI GCNGC 2 cut(s) 103, 142
BlsI GCNGC 2 cut(s) 104, 143
BmsI GCATC 2 cut(s) 42, 89
BsaJI CCNNGG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 66
BseXI GCAGC 2 cut(s) 114, 153
BspCNI CTCAG 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 124
BssT1I CCWWGG 1 cut(s) 124
BstAPI GCANNNNNTGC 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 75
BstMWI GCNNNNNNNGC 1 cut(s) 108
BstNSI RCATGY 1 cut(s) 8
BstV1I GCAGC 2 cut(s) 114, 153
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 108
CviAII CATG 3 cut(s) 5, 45, 49
CviJI RGCY 1 cut(s) 105
CviKI_1 RGCY 1 cut(s) 105
DdeI CTNAG 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 124
EcoT22I ATGCAT 3 cut(s) 6, 50, 174
ErhI CCWWGG 1 cut(s) 124
FaeI CATG 3 cut(s) 8, 48, 52
FaiI YATR 7 cut(s) 6, 46, 50, 71, 174, 176, 184
FatI CATG 3 cut(s) 4, 44, 48
Fnu4HI GCNGC 2 cut(s) 103, 142
Fsp4HI GCNGC 2 cut(s) 103, 142
GluI GCNGC 2 cut(s) 103, 142
Hin1II CATG 3 cut(s) 8, 48, 52
HinfI GANTC 1 cut(s) 80
Hpy188I TCNGA 3 cut(s) 66, 76, 160
Hpy188III TCNNGA 1 cut(s) 89
HpyCH4V TGCA 5 cut(s) 4, 8, 48, 102, 172
HpyF10VI GCNNNNNNNGC 1 cut(s) 108
HpyF3I CTNAG 1 cut(s) 75
Hsp92II CATG 3 cut(s) 8, 48, 52
Lsp1109I GCAGC 2 cut(s) 114, 153
LweI GCATC 2 cut(s) 42, 89
MluCI AATT 1 cut(s) 129
MnlI CCTC 1 cut(s) 70
Mph1103I ATGCAT 3 cut(s) 6, 50, 174
MwoI GCNNNNNNNGC 1 cut(s) 108
NlaIII CATG 3 cut(s) 8, 48, 52
NsiI ATGCAT 3 cut(s) 6, 50, 174
NspI RCATGY 1 cut(s) 8
PaeI GCATGC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 80
PkrI GCNGC 2 cut(s) 104, 143
PstNI CAGNNNCTG 1 cut(s) 108
SatI GCNGC 2 cut(s) 103, 142
SetI ASST 2 cut(s) 107, 154
SfaNI GCATC 2 cut(s) 42, 89
SgeI CNNG 8 cut(s) 17, 57, 61, 68, 101, 137, 165, 169
SphI GCATGC 1 cut(s) 8
Sse9I AATT 1 cut(s) 129
StyI CCWWGG 1 cut(s) 124
TasI AATT 1 cut(s) 129
TfiI GAWTC 1 cut(s) 80
TseI GCWGC 2 cut(s) 102, 141
XapI RAATTY 1 cut(s) 129
XceI RCATGY 1 cut(s) 8
Zsp2I ATGCAT 3 cut(s) 6, 50, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.