pycom08g13160

PB1 domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Reverse (-)
11771355 .. 11772202
848 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 786 bp
ATGGGGGAGCCAATTGGGAAGAAGAAAGATCATGAGGTTCAGAAGCCAGGTAATGCTGGCAGTAAGCACAGCAAGTCCTCGGATCGAAACTCGAAAGCCTTTGATGAAGACACTGCAATCTTCATCAACATGTCCCATGAACTCAAAGAAGAAGGTAGCAAGCTCTATCAGAAGCACGATCACGAAGGCGCGATGTTGAAGTATGAAAAGGCCCTCAAACTCCTTCCACAGAATCATTTTGAAGTTGCTCATTTGCATAGCAGGTACAGTAAAGCGTTGTTAAAAAGAGCGTTTTGTTATGAAGCTTTGGCATTGAGAGATGTTAATTCTGTGCTGAGTACGGAACCGAATAATCTTAGCGCGTTGGAGATTCTAGCTAGCGTGAAGAGGGTGATGAATGAAAAGGGTATTGTTTTTTATGAGAAAGAGATTGGTATTGCTAATGTACAGCAGCCTGCTGCTGCTCATTTTCGTAAGGTGGTGAAGGAGAAGTTAAAGAAGAAGAGTAAGAAAATTGAGCAGAAGATGGAGGATAAGTTTGTTGTGGAAGAGAAGGTGAGTTCTGATAAGGATAAAGAAGTGGTTATGAAGATCGTTGAGGAAGATAAAGTGGTTATGAGGCATGTTGAAGAAGAGAAACTGGTTACGAAACATGTTGAGGAAGAAAAAGTAGTTGCAAAGCCAGTCAAGCTGGTGTTTGGAGAGGACATTAGGTGGGCTCAATTACCAGCGAATTGTAGCATGCGTTTGGCGAGGGAGATAGTTAGGGATCGATTCCTGGCTTGA
Functional Annotation

Protein Analysis

262

Amino Acids

29.94

Weight (kDa)

9.11

Isoelectric Point (pI)

32.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 252
AccII CGCG 2 cut(s) 191, 362
AclWI GGATC 2 cut(s) 90, 777
AfaI GTAC 3 cut(s) 266, 340, 447
AflIII ACRYGT 2 cut(s) 129, 652
AgsI TTSAA 3 cut(s) 199, 242, 629
AjnI CCWGG 2 cut(s) 46, 777
AluBI AGCT 4 cut(s) 163, 305, 377, 691
AluI AGCT 4 cut(s) 163, 305, 377, 691
AlwI GGATC 2 cut(s) 90, 777
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 3 cut(s) 451, 458, 461
AspLEI GCGC 2 cut(s) 191, 362
AspS9I GGNCC 1 cut(s) 211
AsuHPI GGTGA 3 cut(s) 403, 493, 568
AsuNHI GCTAGC 1 cut(s) 377
BanII GRGCYC 1 cut(s) 721
BbsI GAAGAC 1 cut(s) 114
BbvI GCAGC 3 cut(s) 445, 448, 463
BccI CCATC 1 cut(s) 520
BciT130I CCWGG 2 cut(s) 48, 779
BfaI CTAG 2 cut(s) 374, 378
BfuAI ACCTGC 1 cut(s) 252
BisI GCNGC 3 cut(s) 452, 459, 462
BlsI GCNGC 3 cut(s) 453, 460, 463
Bme1390I CCNGG 2 cut(s) 48, 779
BmgT120I GGNCC 1 cut(s) 211
BmiI GGNNCC 2 cut(s) 9, 345
BmrFI CCNGG 2 cut(s) 48, 779
BmtI GCTAGC 1 cut(s) 381
BpiI GAAGAC 1 cut(s) 114
Bsa29I ATCGAT 1 cut(s) 772
BsaJI CCNNGG 1 cut(s) 78
BsaXI ACNNNNNCTCC 2 cut(s) 521, 551
Bse1I ACTGG 2 cut(s) 645, 683
BseBI CCWGG 2 cut(s) 48, 779
BseCI ATCGAT 1 cut(s) 772
BseDI CCNNGG 1 cut(s) 78
BseMII CTCAG 1 cut(s) 326
BseNI ACTGG 2 cut(s) 645, 683
BseXI GCAGC 3 cut(s) 445, 448, 463
Bsh1236I CGCG 2 cut(s) 191, 362
BshFI GGCC 1 cut(s) 212
BshVI ATCGAT 1 cut(s) 772
BslFI GGGAC 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 118
BsnI GGCC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 721
Bsp1407I TGTACA 1 cut(s) 445
Bsp143I GATC 5 cut(s) 28, 82, 178, 591, 769
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 1 cut(s) 327
BspDI ATCGAT 1 cut(s) 772
BspFNI CGCG 2 cut(s) 191, 362
BspHI TCATGA 1 cut(s) 31
BspLI GGNNCC 2 cut(s) 9, 345
BspMI ACCTGC 1 cut(s) 252
BspOI GCTAGC 1 cut(s) 381
BspPI GGATC 2 cut(s) 90, 777
BsrGI TGTACA 1 cut(s) 445
BsrI ACTGG 2 cut(s) 645, 683
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 5 cut(s) 28, 82, 178, 591, 769
Bst2UI CCWGG 2 cut(s) 48, 779
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 4 cut(s) 380, 497, 543, 627
BstAUI TGTACA 1 cut(s) 445
BstC8I GCNNGC 5 cut(s) 58, 161, 379, 456, 743
BstDEI CTNAG 2 cut(s) 335, 356
BstFNI CGCG 2 cut(s) 191, 362
BstHHI GCGC 2 cut(s) 191, 362
BstKTI GATC 5 cut(s) 31, 85, 181, 594, 772
BstMBI GATC 5 cut(s) 28, 82, 178, 591, 769
BstMWI GCNNNNNNNGC 1 cut(s) 688
BstNI CCWGG 2 cut(s) 48, 779
BstNSI RCATGY 4 cut(s) 133, 626, 656, 745
BstSCI CCNGG 2 cut(s) 46, 777
BstUI CGCG 2 cut(s) 191, 362
BstV1I GCAGC 3 cut(s) 445, 448, 463
BstV2I GAAGAC 1 cut(s) 114
Bsu15I ATCGAT 1 cut(s) 772
BsuRI GGCC 1 cut(s) 212
BsuTUI ATCGAT 1 cut(s) 772
BtgZI GCGATG 1 cut(s) 206
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 111
BveI ACCTGC 1 cut(s) 252
Cac8I GCNNGC 5 cut(s) 58, 161, 379, 456, 743
CciI TCATGA 1 cut(s) 31
CfoI GCGC 2 cut(s) 191, 362
Cfr13I GGNCC 1 cut(s) 211
ClaI ATCGAT 1 cut(s) 772
Csp6I GTAC 3 cut(s) 265, 339, 446
CviAII CATG 6 cut(s) 32, 130, 137, 623, 653, 742
CviQI GTAC 3 cut(s) 265, 339, 446
DdeI CTNAG 2 cut(s) 335, 356
DpnI GATC 5 cut(s) 30, 84, 180, 593, 771
DpnII GATC 5 cut(s) 28, 82, 178, 591, 769
Eam1104I CTCTTC 4 cut(s) 380, 497, 543, 627
EarI CTCTTC 4 cut(s) 380, 497, 543, 627
Eco24I GRGCYC 1 cut(s) 721
EcoO109I RGGNCCY 1 cut(s) 211
EcoRII CCWGG 2 cut(s) 46, 777
EcoT38I GRGCYC 1 cut(s) 721
FaeI CATG 6 cut(s) 35, 133, 140, 626, 656, 745
FaqI GGGAC 1 cut(s) 118
FatI CATG 6 cut(s) 31, 129, 136, 622, 652, 741
Fnu4HI GCNGC 3 cut(s) 452, 459, 462
FriOI GRGCYC 1 cut(s) 721
Fsp4HI GCNGC 3 cut(s) 452, 459, 462
FspBI CTAG 2 cut(s) 374, 378
GlaI GCGC 2 cut(s) 190, 361
GluI GCNGC 3 cut(s) 452, 459, 462
HaeIII GGCC 1 cut(s) 212
HhaI GCGC 2 cut(s) 191, 362
Hin1II CATG 6 cut(s) 35, 133, 140, 626, 656, 745
Hin6I GCGC 2 cut(s) 189, 360
HinP1I GCGC 2 cut(s) 189, 360
HindIII AAGCTT 1 cut(s) 303
HinfI GANTC 3 cut(s) 232, 370, 774
HphI GGTGA 3 cut(s) 403, 493, 568
Hpy188I TCNGA 4 cut(s) 42, 82, 171, 565
Hpy188III TCNNGA 2 cut(s) 32, 182
HpyAV CCTTC 5 cut(s) 146, 179, 233, 478, 547
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4V TGCA 3 cut(s) 116, 256, 677
HpyF10VI GCNNNNNNNGC 1 cut(s) 688
HpyF3I CTNAG 2 cut(s) 335, 356
Hsp92II CATG 6 cut(s) 35, 133, 140, 626, 656, 745
HspAI GCGC 2 cut(s) 189, 360
Kzo9I GATC 5 cut(s) 28, 82, 178, 591, 769
LmnI GCTCC 1 cut(s) 7
Lsp1109I GCAGC 3 cut(s) 445, 448, 463
MaeI CTAG 2 cut(s) 374, 378
MaeIII GTNAC 1 cut(s) 643
MalI GATC 5 cut(s) 30, 84, 180, 593, 771
MboI GATC 5 cut(s) 28, 82, 178, 591, 769
MfeI CAATTG 1 cut(s) 12
MhlI GDGCHC 1 cut(s) 721
MluCI AATT 5 cut(s) 12, 325, 513, 722, 733
MmeI TCCRAC 1 cut(s) 345
MseI TTAA 3 cut(s) 281, 324, 494
MslI CAYNNNNRTG 1 cut(s) 128
MspR9I CCNGG 2 cut(s) 48, 779
MunI CAATTG 1 cut(s) 12
MvaI CCWGG 2 cut(s) 48, 779
MvnI CGCG 2 cut(s) 191, 362
MwoI GCNNNNNNNGC 1 cut(s) 688
NdeII GATC 5 cut(s) 28, 82, 178, 591, 769
NheI GCTAGC 1 cut(s) 377
NlaIII CATG 6 cut(s) 35, 133, 140, 626, 656, 745
NlaIV GGNNCC 2 cut(s) 9, 345
NspI RCATGY 4 cut(s) 133, 626, 656, 745
PaeI GCATGC 1 cut(s) 745
PagI TCATGA 1 cut(s) 31
PciI ACATGT 2 cut(s) 129, 652
PfeI GAWTC 3 cut(s) 232, 370, 774
PkrI GCNGC 3 cut(s) 453, 460, 463
PscI ACATGT 2 cut(s) 129, 652
Psp6I CCWGG 2 cut(s) 46, 777
PspGI CCWGG 2 cut(s) 46, 777
PspN4I GGNNCC 2 cut(s) 9, 345
PspPI GGNCC 1 cut(s) 211
RsaI GTAC 3 cut(s) 266, 340, 447
RsaNI GTAC 3 cut(s) 265, 339, 446
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 3 cut(s) 281, 324, 494
SatI GCNGC 3 cut(s) 452, 459, 462
Sau3AI GATC 5 cut(s) 28, 82, 178, 591, 769
Sau96I GGNCC 1 cut(s) 211
ScrFI CCNGG 2 cut(s) 48, 779
SduI GDGCHC 1 cut(s) 721
SmiMI CAYNNNNRTG 1 cut(s) 128
SphI GCATGC 1 cut(s) 745
Sse9I AATT 5 cut(s) 12, 325, 513, 722, 733
SspMI CTAG 2 cut(s) 374, 378
StyD4I CCNGG 2 cut(s) 46, 777
TaaI ACNGT 1 cut(s) 269
TaqI TCGA 3 cut(s) 85, 92, 772
TasI AATT 5 cut(s) 12, 325, 513, 722, 733
TatI WGTACW 1 cut(s) 445
TfiI GAWTC 3 cut(s) 232, 370, 774
Tru1I TTAA 3 cut(s) 281, 324, 494
Tru9I TTAA 3 cut(s) 281, 324, 494
TscAI CASTG 1 cut(s) 118
TseI GCWGC 3 cut(s) 451, 458, 461
TspDTI ATGAA 8 cut(s) 112, 120, 153, 219, 315, 410, 414, 602
TspGWI ACGGA 1 cut(s) 356
TspRI CASTG 1 cut(s) 118
XceI RCATGY 4 cut(s) 133, 626, 656, 745
XspI CTAG 2 cut(s) 374, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.