pycom08g13600

RNA helicase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Reverse (-)
12388778 .. 12388990
213 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 213 bp
ATGAGAAATCCTAAATCAAAGAAATATCGCATCCAAAAAAAACTCTCAGATCAACTCCAAGAAATCGAGCTTTTGAAATCGTGGATCGAATCCCACCAACCCGTACGCATCTCCAACCTCACGTCTCTTCCGAATTTCCCCTTACACTTACCTGTCGGTCGCATCAGCAACACCACCCTATTTTCGCGATACGCCTACACCACTAGGTTCTAG

Protein Analysis

71

Amino Acids

8.32

Weight (kDa)

10.49

Isoelectric Point (pI)

46.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 187
AclWI GGATC 1 cut(s) 92
AcsI RAATTY 1 cut(s) 133
AfaI GTAC 1 cut(s) 105
AgsI TTSAA 1 cut(s) 76
AjiI CACGTC 1 cut(s) 123
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 129
AlwI GGATC 1 cut(s) 92
ApoI RAATTY 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 129
BfaI CTAG 2 cut(s) 204, 211
BmgBI CACGTC 1 cut(s) 123
BmsI GCATC 3 cut(s) 39, 117, 171
BseGI GGATG 1 cut(s) 30
BseMII CTCAG 1 cut(s) 60
Bsh1236I CGCG 1 cut(s) 187
Bsh1285I CGRYCG 1 cut(s) 160
BsiEI CGRYCG 1 cut(s) 160
BsiWI CGTACG 1 cut(s) 103
BsmAI GTCTC 1 cut(s) 129
BsmBI CGTCTC 1 cut(s) 129
Bsp143I GATC 2 cut(s) 49, 84
Bsp68I TCGCGA 1 cut(s) 187
BspCNI CTCAG 1 cut(s) 59
BspFNI CGCG 1 cut(s) 187
BspPI GGATC 1 cut(s) 92
BssMI GATC 2 cut(s) 49, 84
Bst6I CTCTTC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 46
BstF5I GGATG 1 cut(s) 30
BstFNI CGCG 1 cut(s) 187
BstKTI GATC 2 cut(s) 52, 87
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 2 cut(s) 49, 84
BstMCI CGRYCG 1 cut(s) 160
BstUI CGCG 1 cut(s) 187
BtrI CACGTC 1 cut(s) 123
BtsCI GGATG 1 cut(s) 30
BtuMI TCGCGA 1 cut(s) 187
Csp6I GTAC 1 cut(s) 104
CviJI RGCY 1 cut(s) 70
CviKI_1 RGCY 1 cut(s) 70
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 1 cut(s) 46
DpnI GATC 2 cut(s) 51, 86
DpnII GATC 2 cut(s) 49, 84
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Esp3I CGTCTC 1 cut(s) 129
FokI GGATG 1 cut(s) 17
FspBI CTAG 2 cut(s) 204, 211
HinfI GANTC 1 cut(s) 89
Hpy188I TCNGA 2 cut(s) 49, 132
Hpy188III TCNNGA 1 cut(s) 186
HpyCH4IV ACGT 1 cut(s) 122
HpyF3I CTNAG 1 cut(s) 46
HpySE526I ACGT 1 cut(s) 122
Kzo9I GATC 2 cut(s) 49, 84
LpnPI CCDG 1 cut(s) 165
LweI GCATC 3 cut(s) 39, 117, 171
MaeI CTAG 2 cut(s) 204, 211
MaeII ACGT 1 cut(s) 122
MalI GATC 2 cut(s) 51, 86
MboI GATC 2 cut(s) 49, 84
MboII GAAGA 1 cut(s) 119
MluCI AATT 1 cut(s) 133
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 1 cut(s) 128
MvnI CGCG 1 cut(s) 187
NdeII GATC 2 cut(s) 49, 84
NruI TCGCGA 1 cut(s) 187
PcsI WCGNNNNNNNCGW 1 cut(s) 128
PfeI GAWTC 1 cut(s) 89
Pfl23II CGTACG 1 cut(s) 103
PspLI CGTACG 1 cut(s) 103
RruI TCGCGA 1 cut(s) 187
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
Sau3AI GATC 2 cut(s) 49, 84
SetI ASST 5 cut(s) 72, 120, 125, 154, 209
SfaNI GCATC 3 cut(s) 39, 117, 171
SgeI CNNG 7 cut(s) 71, 79, 93, 113, 133, 164, 198
Sse9I AATT 1 cut(s) 133
SspMI CTAG 2 cut(s) 204, 211
TaiI ACGT 1 cut(s) 125
TaqI TCGA 2 cut(s) 66, 87
TaqII GACCGA 1 cut(s) 146
TasI AATT 1 cut(s) 133
TfiI GAWTC 1 cut(s) 89
XapI RAATTY 1 cut(s) 133
XspI CTAG 2 cut(s) 204, 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.