Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

13010697 .. 13012412

Gene Structure 1716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAACAACACCCAAATTGGGTACAATTCATATTATTGGGCCGAATTCTGGGCCCAATTAGTTGCTGTGTCAAATTTCCAAAGTCGGTTAAAAATAACGGTCGTATTCGTATGTCGCCGAGGTCTCTCGCTCCATCTTCCTCCTCTGTTCTTCATCTTCTTCCCCACTTTCCCTACAAAATCGACTGCACAAGCTTCAAACTTTTCCTCCGAGGAAAATCCCACTCCCATTCTCATGGCTTCAGATTTTGCTCTTAAAGTTCCAGCTGAACTTGAGTCGGCTTTGCGGTTGAACGCGGCTCAGAACTATATAACCAAGAGGCCGTGGCTTGATCGTTATGGAATCAATGTGAGACCCATTGCACCGATTGGAAGTTCGAGTAGAAAAGTACAAGTTGATTCATCTATTTTACACCGTTGCTTGCCGGATGAGCTGCTCTTTGAGGTTTTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006417 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

152

Amino Acids

17.16

Weight (kDa)

9.03

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	296
AciI	CCGC	2 cut(s)	286, 296
AcsI	RAATTY	2 cut(s)	44, 73
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	2 cut(s)	23, 390
AfiI	CCNNNNNNNGG	2 cut(s)	18, 48
AgsI	TTSAA	2 cut(s)	198, 292
AluBI	AGCT	3 cut(s)	194, 266, 433
AluI	AGCT	3 cut(s)	194, 266, 433
Alw26I	GTCTC	2 cut(s)	128, 346
AoxI	GGCC	3 cut(s)	39, 51, 320
ApaI	GGGCCC	1 cut(s)	55
ApeKI	GCWGC	1 cut(s)	433
ApoI	RAATTY	2 cut(s)	44, 73
AspS9I	GGNCC	3 cut(s)	39, 51, 52
BaeGI	GKGCMC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	420
BccI	CCATC	1 cut(s)	141
BceAI	ACGGC	1 cut(s)	307
BcoDI	GTCTC	2 cut(s)	128, 346
BisI	GCNGC	2 cut(s)	297, 434
BlsI	GCNGC	2 cut(s)	298, 435
BmgT120I	GGNCC	3 cut(s)	39, 51, 52
BmiI	GGNNCC	1 cut(s)	53
BpuEI	CTTGAG	1 cut(s)	293
BsaI	GGTCTC	2 cut(s)	128, 346
BsaJI	CCNNGG	3 cut(s)	118, 210, 323
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 48
Bse3DI	GCAATG	1 cut(s)	357
BseDI	CCNNGG	3 cut(s)	118, 210, 323
BseGI	GGATG	1 cut(s)	433
BseLI	CCNNNNNNNGG	2 cut(s)	18, 48
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	314
BseRI	GAGGAG	1 cut(s)	132
BseSI	GKGCMC	1 cut(s)	55
BseXI	GCAGC	1 cut(s)	420
BsgI	GTGCAG	1 cut(s)	171
Bsh1236I	CGCG	1 cut(s)	296
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	3 cut(s)	41, 53, 322
BsiEI	CGRYCG	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	425
BslI	CCNNNNNNNGG	2 cut(s)	18, 48
BsmAI	GTCTC	2 cut(s)	128, 346
BsnI	GGCC	3 cut(s)	41, 53, 322
Bso31I	GGTCTC	2 cut(s)	128, 346
Bsp120I	GGGCCC	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	2 cut(s)	286, 296
BspANI	GGCC	3 cut(s)	41, 53, 322
BspCNI	CTCAG	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	296
BspLI	GGNNCC	1 cut(s)	53
BspTNI	GGTCTC	2 cut(s)	128, 346
BsrDI	GCAATG	1 cut(s)	357
BssECI	CCNNGG	3 cut(s)	118, 210, 323
BssMI	GATC	1 cut(s)	331
Bst4CI	ACNGT	2 cut(s)	100, 416
BstC8I	GCNNGC	1 cut(s)	422
BstDEI	CTNAG	1 cut(s)	300
BstDSI	CCRYGG	1 cut(s)	323
BstF5I	GGATG	1 cut(s)	433
BstFNI	CGCG	1 cut(s)	296
BstKTI	GATC	1 cut(s)	334
BstMAI	GTCTC	2 cut(s)	128, 346
BstMBI	GATC	1 cut(s)	331
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	1 cut(s)	430
BstSLI	GKGCMC	1 cut(s)	55
BstUI	CGCG	1 cut(s)	296
BstV1I	GCAGC	1 cut(s)	420
BstXI	CCANNNNNNTGG	1 cut(s)	235
BsuRI	GGCC	3 cut(s)	41, 53, 322
BtgI	CCRYGG	1 cut(s)	323
BtsCI	GGATG	1 cut(s)	433
Cac8I	GCNNGC	1 cut(s)	422
Cfr13I	GGNCC	3 cut(s)	39, 51, 52
Csp6I	GTAC	2 cut(s)	22, 389
CviAII	CATG	2 cut(s)	235, 453
CviQI	GTAC	2 cut(s)	22, 389
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	55
Eco31I	GGTCTC	2 cut(s)	128, 346
Eco57I	CTGAAG	1 cut(s)	225
EcoRI	GAATTC	1 cut(s)	44
EcoT38I	GRGCYC	1 cut(s)	55
FaeI	CATG	2 cut(s)	238, 456
FaiI	YATR	7 cut(s)	31, 112, 236, 309, 311, 339, 454
FatI	CATG	2 cut(s)	234, 452
Fnu4HI	GCNGC	2 cut(s)	297, 434
FokI	GGATG	1 cut(s)	440
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	2 cut(s)	297, 434
GluI	GCNGC	2 cut(s)	297, 434
HaeIII	GGCC	3 cut(s)	41, 53, 322
HapII	CCGG	1 cut(s)	425
Hin1II	CATG	2 cut(s)	238, 456
HindIII	AAGCTT	1 cut(s)	192
HinfI	GANTC	3 cut(s)	275, 342, 398
HpaII	CCGG	1 cut(s)	425
Hpy188I	TCNGA	3 cut(s)	211, 244, 303
HpyCH4III	ACNGT	2 cut(s)	100, 416
HpyCH4V	TGCA	3 cut(s)	188, 362, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	430
HpyF3I	CTNAG	1 cut(s)	300
Hsp92II	CATG	2 cut(s)	238, 456
Kzo9I	GATC	1 cut(s)	331
LmnI	GCTCC	1 cut(s)	135
LpnPI	CCDG	3 cut(s)	34, 276, 438
Lsp1109I	GCAGC	1 cut(s)	420
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	4 cut(s)	128, 142, 148, 151
MhlI	GDGCHC	1 cut(s)	55
MluCI	AATT	5 cut(s)	15, 25, 44, 56, 73
MlyI	GAGTC	1 cut(s)	284
MnlI	CCTC	7 cut(s)	113, 150, 153, 205, 217, 312, 436
MseI	TTAA	2 cut(s)	89, 255
MslI	CAYNNNNRTG	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	1 cut(s)	425
MvnI	CGCG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	430
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	2 cut(s)	238, 456
NlaIV	GGNNCC	1 cut(s)	53
NmeAIII	GCCGAG	1 cut(s)	143
PfeI	GAWTC	2 cut(s)	342, 398
PkrI	GCNGC	2 cut(s)	298, 435
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	53
PspOMI	GGGCCC	1 cut(s)	51
PspPI	GGNCC	3 cut(s)	39, 51, 52
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	2 cut(s)	23, 390
RsaNI	GTAC	2 cut(s)	22, 389
RseI	CAYNNNNRTG	1 cut(s)	233
SaqAI	TTAA	2 cut(s)	89, 255
SatI	GCNGC	2 cut(s)	297, 434
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	3 cut(s)	39, 51, 52
SchI	GAGTC	1 cut(s)	284
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	5 cut(s)	124, 196, 268, 435, 447
SmiMI	CAYNNNNRTG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	5 cut(s)	15, 25, 44, 56, 73
SsiI	CCGC	2 cut(s)	286, 296
TaaI	ACNGT	2 cut(s)	100, 416
TaqI	TCGA	2 cut(s)	182, 377
TasI	AATT	5 cut(s)	15, 25, 44, 56, 73
TatI	WGTACW	1 cut(s)	388
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	2 cut(s)	342, 398
Tru1I	TTAA	2 cut(s)	89, 255
Tru9I	TTAA	2 cut(s)	89, 255
TseI	GCWGC	1 cut(s)	433
TspDTI	ATGAA	4 cut(s)	17, 18, 142, 390
XapI	RAATTY	2 cut(s)	44, 73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.