pycom08g14400

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Forward (+)
13611528 .. 13612016
489 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 321 bp
ATGATAGTACGCAAAATAGCTGTTTTAATCAATTTTGATGGGTGTAGGGAGGCCAATAAGGAGTATGTAAATCATCTCCACAAGGTGGTGGACAAGTTGTTCAAGATGCTATCTTTAGGGTTGCGCCTTGAAGAACACGAGTTAAAGAAGGCTGCTGGTGGGGATGACTTGGTTTACCTTCTGAAAATTAATTATTACCCACCATGTCCCCGCCATGACCTTGCTCTTTGGGTGGTGGCTCACACTAACATGTCAGCACTCACCATTCTTGTTCCCAACGATGTTCAAGGCCTCCAAGCATGCAAAGATGGGGATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

107

Amino Acids

12.05

Weight (kDa)

6.95

Isoelectric Point (pI)

32.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 60 - 106 2.3e-09 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 85
AciI CCGC 1 cut(s) 211
AdeI CACNNNGTG 1 cut(s) 85
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 85
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 3 cut(s) 103, 131, 287
AloI GAACNNNNNNTCC 2 cut(s) 83, 115
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
AoxI GGCC 2 cut(s) 51, 289
ApeKI GCWGC 1 cut(s) 152
AseI ATTAAT 1 cut(s) 189
AspLEI GCGC 1 cut(s) 126
AsuHPI GGTGA 1 cut(s) 253
BauI CACGAG 1 cut(s) 137
BbvI GCAGC 1 cut(s) 139
BccI CCATC 2 cut(s) 32, 302
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
BmsI GCATC 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 85
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 1 cut(s) 85
BseXI GCAGC 1 cut(s) 139
BshFI GGCC 2 cut(s) 53, 291
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 192
BsnI GGCC 2 cut(s) 53, 291
BspACI CCGC 1 cut(s) 211
BspANI GGCC 2 cut(s) 53, 291
BssSI CACGAG 1 cut(s) 137
Bst2BI CACGAG 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 301
BstF5I GGATG 1 cut(s) 169
BstHHI GCGC 1 cut(s) 126
BstNSI RCATGY 2 cut(s) 253, 303
BstV1I GCAGC 1 cut(s) 139
BsuRI GGCC 2 cut(s) 53, 291
BtsCI GGATG 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 301
CfoI GCGC 1 cut(s) 126
Csp6I GTAC 1 cut(s) 8
CviAII CATG 4 cut(s) 204, 215, 250, 300
CviJI RGCY 5 cut(s) 20, 53, 152, 239, 291
CviKI_1 RGCY 5 cut(s) 20, 53, 152, 239, 291
CviQI GTAC 1 cut(s) 8
DraIII CACNNNGTG 1 cut(s) 85
Eco147I AGGCCT 1 cut(s) 291
FaeI CATG 4 cut(s) 207, 218, 253, 303
FaiI YATR 5 cut(s) 66, 205, 216, 251, 301
FaqI GGGAC 1 cut(s) 192
FatI CATG 4 cut(s) 203, 214, 249, 299
FauI CCCGC 1 cut(s) 218
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 1 cut(s) 153
GlaI GCGC 1 cut(s) 125
GluI GCNGC 1 cut(s) 153
HaeIII GGCC 2 cut(s) 53, 291
HhaI GCGC 1 cut(s) 126
Hin1II CATG 4 cut(s) 207, 218, 253, 303
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 2 cut(s) 91, 175
Hpy188I TCNGA 1 cut(s) 183
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 2 cut(s) 91, 175
HpyAV CCTTC 2 cut(s) 142, 188
HpyCH4V TGCA 1 cut(s) 303
Hsp92II CATG 4 cut(s) 207, 218, 253, 303
HspAI GCGC 1 cut(s) 124
LpnPI CCDG 1 cut(s) 141
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 1 cut(s) 96
MboII GAAGA 1 cut(s) 143
MluCI AATT 3 cut(s) 31, 186, 190
MnlI CCTC 2 cut(s) 43, 302
MseI TTAA 3 cut(s) 26, 143, 189
MslI CAYNNNNRTG 1 cut(s) 248
NlaIII CATG 4 cut(s) 207, 218, 253, 303
NspI RCATGY 2 cut(s) 253, 303
PaeI GCATGC 1 cut(s) 303
PceI AGGCCT 1 cut(s) 291
PciI ACATGT 1 cut(s) 249
PflMI CCANNNNNTGG 1 cut(s) 85
PkrI GCNGC 1 cut(s) 154
PscI ACATGT 1 cut(s) 249
PshBI ATTAAT 1 cut(s) 189
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
RseI CAYNNNNRTG 1 cut(s) 248
SaqAI TTAA 3 cut(s) 26, 143, 189
SatI GCNGC 1 cut(s) 153
SetI ASST 4 cut(s) 22, 87, 180, 222
SfaNI GCATC 1 cut(s) 96
SmiMI CAYNNNNRTG 1 cut(s) 248
SphI GCATGC 1 cut(s) 303
Sse9I AATT 3 cut(s) 31, 186, 190
SseBI AGGCCT 1 cut(s) 291
SsiI CCGC 1 cut(s) 211
StuI AGGCCT 1 cut(s) 291
TasI AATT 3 cut(s) 31, 186, 190
Tru1I TTAA 3 cut(s) 26, 143, 189
Tru9I TTAA 3 cut(s) 26, 143, 189
TseI GCWGC 1 cut(s) 152
Van91I CCANNNNNTGG 1 cut(s) 85
VspI ATTAAT 1 cut(s) 189
XceI RCATGY 2 cut(s) 253, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.