pycom08g14540

Biotin--protein ligase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Forward (+)
13783237 .. 13787293
4057 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 261 bp
ATGTTATATGAAGTTTTAATAAATCAAGGATTCCAATCTCTTGAGGAGCTATACTATAGGACATGGCTACACAGCGGACAGAGAGTTATTGTGCAAGAAAAAACTGAGGATCAAGTGGTGGAAAATGTGGTTACTATTCAGGGTTTGACCTCATCAGGATATTTGTTGGCTATTGGTGATGACAATCAAATGTGTGAACTTCATCCTGATGGCAATAGTTTTGACTTCTTCAAAGGATTAGTTAGGCGAAAAATGGACTGA

Protein Analysis

87

Amino Acids

9.96

Weight (kDa)

4.69

Isoelectric Point (pI)

26.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPL_C PF02237 24 - 79 4.7e-09 Biotin protein ligase C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 75
AclWI GGATC 1 cut(s) 117
AgsI TTSAA 1 cut(s) 232
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
AlwI GGATC 1 cut(s) 117
AsuHPI GGTGA 1 cut(s) 188
BccI CCATC 1 cut(s) 203
BfmI CTRYAG 1 cut(s) 55
BpuEI CTTGAG 1 cut(s) 62
BsaBI GATNNNNATC 2 cut(s) 34, 183
Bse8I GATNNNNATC 2 cut(s) 34, 183
BseGI GGATG 1 cut(s) 202
BseJI GATNNNNATC 2 cut(s) 34, 183
BseMII CTCAG 1 cut(s) 96
BseRI GAGGAG 1 cut(s) 59
Bsp143I GATC 1 cut(s) 109
BspACI CCGC 1 cut(s) 75
BspCNI CTCAG 1 cut(s) 97
BspPI GGATC 1 cut(s) 117
BssMI GATC 1 cut(s) 109
BstDEI CTNAG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 202
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstSFI CTRYAG 1 cut(s) 55
BtsCI GGATG 1 cut(s) 202
CviAII CATG 1 cut(s) 63
CviJI RGCY 3 cut(s) 49, 67, 170
CviKI_1 RGCY 3 cut(s) 49, 67, 170
DdeI CTNAG 1 cut(s) 105
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
FaeI CATG 1 cut(s) 66
FaiI YATR 5 cut(s) 7, 9, 52, 57, 64
FatI CATG 1 cut(s) 62
FokI GGATG 1 cut(s) 189
Hin1II CATG 1 cut(s) 66
HinfI GANTC 1 cut(s) 30
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 197
Hpy188III TCNNGA 3 cut(s) 41, 156, 206
Hpy8I GTNNAC 1 cut(s) 197
HpyCH4V TGCA 1 cut(s) 94
HpyF3I CTNAG 1 cut(s) 105
Hsp92II CATG 1 cut(s) 66
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 3 cut(s) 125, 141, 219
MaeIII GTNAC 1 cut(s) 130
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 1 cut(s) 220
MnlI CCTC 3 cut(s) 37, 100, 160
MseI TTAA 1 cut(s) 17
MslI CAYNNNNRTG 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 75
NdeII GATC 1 cut(s) 109
NlaIII CATG 1 cut(s) 66
PfeI GAWTC 1 cut(s) 30
RseI CAYNNNNRTG 1 cut(s) 207
SaqAI TTAA 1 cut(s) 17
Sau3AI GATC 1 cut(s) 109
SetI ASST 2 cut(s) 51, 152
SfcI CTRYAG 1 cut(s) 55
SgeI CNNG 8 cut(s) 38, 53, 75, 107, 125, 152, 168, 218
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SsiI CCGC 1 cut(s) 75
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TspDTI ATGAA 2 cut(s) 24, 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.