pycom08g14610

UPF0695 membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Forward (+)
13921790 .. 13922174
385 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 330 bp
ATGGATCAACATTTGGATTTTGTTATTTTTATTTATGAAGTCGCTTCAAGAGGAATCAAGCGCTGTGGTTATGAAGATGCCACTCCTCCATTAAGGAGGCGGTCCTTAAGTTTTTCACGTGTTCAACCTTCTCAAATAGATCACGGCAATGAAAGTGAATGTTTGTCGGAGGCAGGAGATATTGGGGATCGGGCTCATCACAGCAACAGGCACAGTGAGAGTGGCAGCGTCTGCTTATTTCCTCCAGAGGACATTCAACTGCAATCCTATGGGTTCTGGGGTCGTGAGCCTGTTACATCCAAAGCAATTCCCCTGTCTCTCCCTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRCB

Protein Analysis

110

Amino Acids

12.23

Weight (kDa)

5.65

Isoelectric Point (pI)

67.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 100
AclWI GGATC 2 cut(s) 12, 195
AcvI CACGTG 1 cut(s) 119
AfeI AGCGCT 1 cut(s) 62
AflII CTTAAG 1 cut(s) 106
AflIII ACRYGT 1 cut(s) 118
AgsI TTSAA 3 cut(s) 48, 125, 257
Alw26I GTCTC 1 cut(s) 321
AlwI GGATC 2 cut(s) 12, 195
AlwNI CAGNNNCTG 1 cut(s) 231
Aor51HI AGCGCT 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 225
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 102
AvaII GGWCC 1 cut(s) 102
BanII GRGCYC 1 cut(s) 196
BbrPI CACGTG 1 cut(s) 119
BbvI GCAGC 1 cut(s) 237
BceAI ACGGC 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 321
BfaI CTAG 1 cut(s) 328
BfoI RGCGCY 1 cut(s) 64
BfrI CTTAAG 1 cut(s) 106
BisI GCNGC 1 cut(s) 226
BlsI GCNGC 1 cut(s) 227
Bme18I GGWCC 1 cut(s) 102
BmgT120I GGNCC 1 cut(s) 102
BmsI GCATC 1 cut(s) 67
BpmI CTGGAG 1 cut(s) 228
BsaAI YACGTR 1 cut(s) 119
Bse3DI GCAATG 1 cut(s) 154
BseGI GGATG 1 cut(s) 296
BseMI GCAATG 1 cut(s) 154
BseRI GAGGAG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 237
BsmAI GTCTC 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 196
Bsp143I GATC 3 cut(s) 4, 139, 187
BspACI CCGC 1 cut(s) 100
BspPI GGATC 2 cut(s) 12, 195
BspTI CTTAAG 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 154
BssMI GATC 3 cut(s) 4, 139, 187
Bst4CI ACNGT 1 cut(s) 215
BstAFI CTTAAG 1 cut(s) 106
BstAPI GCANNNNNTGC 1 cut(s) 231
BstBAI YACGTR 1 cut(s) 119
BstF5I GGATG 1 cut(s) 296
BstH2I RGCGCY 1 cut(s) 64
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 3 cut(s) 7, 142, 190
BstMAI GTCTC 1 cut(s) 321
BstMBI GATC 3 cut(s) 4, 139, 187
BstMWI GCNNNNNNNGC 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 237
BtsCI GGATG 1 cut(s) 296
BtsIMutI CAGTG 1 cut(s) 220
CaiI CAGNNNCTG 1 cut(s) 231
CfoI GCGC 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 102
CseI GACGC 1 cut(s) 217
CspCI CAANNNNNGTGG 2 cut(s) 46, 81
CviJI RGCY 2 cut(s) 194, 289
CviKI_1 RGCY 2 cut(s) 194, 289
DpnI GATC 3 cut(s) 6, 141, 189
DpnII GATC 3 cut(s) 4, 139, 187
Eco24I GRGCYC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 102
Eco47III AGCGCT 1 cut(s) 62
Eco72I CACGTG 1 cut(s) 119
EcoT38I GRGCYC 1 cut(s) 196
FaiI YATR 3 cut(s) 36, 72, 270
Fnu4HI GCNGC 1 cut(s) 226
FokI GGATG 1 cut(s) 283
FriOI GRGCYC 1 cut(s) 196
Fsp4HI GCNGC 1 cut(s) 226
FspBI CTAG 1 cut(s) 328
GlaI GCGC 1 cut(s) 62
GluI GCNGC 1 cut(s) 226
GsuI CTGGAG 1 cut(s) 228
HaeII RGCGCY 1 cut(s) 64
HgaI GACGC 1 cut(s) 217
HhaI GCGC 1 cut(s) 63
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HinfI GANTC 1 cut(s) 54
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 3 cut(s) 48, 245, 284
HpyAV CCTTC 1 cut(s) 138
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 1 cut(s) 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 231
HpySE526I ACGT 1 cut(s) 118
HspAI GCGC 1 cut(s) 61
Kzo9I GATC 3 cut(s) 4, 139, 187
LpnPI CCDG 6 cut(s) 159, 193, 258, 262, 303, 326
Lsp1109I GCAGC 1 cut(s) 237
LweI GCATC 1 cut(s) 67
MaeI CTAG 1 cut(s) 328
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 1 cut(s) 292
MalI GATC 3 cut(s) 6, 141, 189
MboI GATC 3 cut(s) 4, 139, 187
MboII GAAGA 1 cut(s) 86
MhlI GDGCHC 1 cut(s) 196
MluCI AATT 1 cut(s) 306
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 6 cut(s) 44, 90, 96, 163, 241, 252
MseI TTAA 2 cut(s) 92, 107
MslI CAYNNNNRTG 1 cut(s) 147
MspCI CTTAAG 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 231
NdeII GATC 3 cut(s) 4, 139, 187
PfeI GAWTC 1 cut(s) 54
PkrI GCNGC 1 cut(s) 227
PmaCI CACGTG 1 cut(s) 119
PmlI CACGTG 1 cut(s) 119
Ppu21I YACGTR 1 cut(s) 119
PspCI CACGTG 1 cut(s) 119
PspPI GGNCC 1 cut(s) 102
PstNI CAGNNNCTG 1 cut(s) 231
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 2 cut(s) 92, 107
SatI GCNGC 1 cut(s) 226
Sau3AI GATC 3 cut(s) 4, 139, 187
Sau96I GGNCC 1 cut(s) 102
SduI GDGCHC 1 cut(s) 196
SetI ASST 2 cut(s) 121, 130
SfaNI GCATC 1 cut(s) 67
SinI GGWCC 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
Sse9I AATT 1 cut(s) 306
SsiI CCGC 1 cut(s) 100
SspMI CTAG 1 cut(s) 328
TaaI ACNGT 1 cut(s) 215
TaiI ACGT 1 cut(s) 121
TasI AATT 1 cut(s) 306
TfiI GAWTC 1 cut(s) 54
Tru1I TTAA 2 cut(s) 92, 107
Tru9I TTAA 2 cut(s) 92, 107
TscAI CASTG 1 cut(s) 220
TseI GCWGC 1 cut(s) 225
TspDTI ATGAA 3 cut(s) 51, 87, 165
TspRI CASTG 1 cut(s) 220
Vha464I CTTAAG 1 cut(s) 106
VpaK11BI GGWCC 1 cut(s) 102
XspI CTAG 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.