Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

14265178 .. 14265536

Gene Structure 359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAGGCCGTTTTGCGAGTCTTTGACCAAATCGACGGACCCAAAACCATTCTCCACCTCCCCAACCCCAACCTCTTCCCCGGGCCCGAAACCCTCATCCCTTTCCGCCAGCTTGAGCTTTGTCTTCAACCAAATTGACGCCATAGAGAAAGAACGCTCCGCGAAGGATCAGACCCTCCAGAAAATCAGAGCTTGTGGAATTGATGCTAATTTGGTTGATTCTGTATCTGTTTCGGTCGGATCGGAGAGGCTGGAAAAGTCAGTGGCGGCTAAGAAGGAGGTGAAGGTGGTGCACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RanBP

Protein Analysis

100

Amino Acids

10.63

Weight (kDa)

9.03

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	161
AciI	CCGC	3 cut(s)	105, 159, 266
AclWI	GGATC	2 cut(s)	174, 247
AcyI	GRCGYC	1 cut(s)	138
AgsI	TTSAA	1 cut(s)	127
AluBI	AGCT	3 cut(s)	111, 117, 191
AluI	AGCT	3 cut(s)	111, 117, 191
Alw21I	GWGCWC	1 cut(s)	294
Alw44I	GTGCAC	1 cut(s)	290
AlwI	GGATC	2 cut(s)	174, 247
Ama87I	CYCGRG	1 cut(s)	79
AoxI	GGCC	2 cut(s)	5, 82
ApaI	GGGCCC	1 cut(s)	86
ApaLI	GTGCAC	1 cut(s)	290
AspS9I	GGNCC	3 cut(s)	37, 82, 83
AsuC2I	CCSGG	2 cut(s)	80, 81
AsuHPI	GGTGA	1 cut(s)	292
AvaI	CYCGRG	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	37
BaeGI	GKGCMC	2 cut(s)	86, 294
BanII	GRGCYC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	294
BcnI	CCSGG	2 cut(s)	80, 81
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	2 cut(s)	80, 81
Bme18I	GGWCC	1 cut(s)	37
BmeT110I	CYCGRG	1 cut(s)	79
BmgT120I	GGNCC	3 cut(s)	37, 82, 83
BmiI	GGNNCC	2 cut(s)	39, 84
BmrFI	CCNGG	2 cut(s)	80, 81
BmsI	GCATC	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	115
BpmI	CTGGAG	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	133
BpuMI	CCSGG	2 cut(s)	80, 81
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	78, 79
Bse1I	ACTGG	1 cut(s)	295
BseDI	CCNNGG	2 cut(s)	78, 79
BseGI	GGATG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	295
BseSI	GKGCMC	2 cut(s)	86, 294
Bsh1236I	CGCG	1 cut(s)	161
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	2 cut(s)	7, 84
BsiEI	CGRYCG	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	294
BsiHKCI	CYCGRG	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	80
BsnI	GGCC	2 cut(s)	7, 84
BsoBI	CYCGRG	1 cut(s)	79
Bsp120I	GGGCCC	1 cut(s)	82
Bsp1286I	GDGCHC	2 cut(s)	86, 294
Bsp143I	GATC	2 cut(s)	166, 239
BspACI	CCGC	3 cut(s)	105, 159, 266
BspANI	GGCC	2 cut(s)	7, 84
BspFNI	CGCG	1 cut(s)	161
BspLI	GGNNCC	2 cut(s)	39, 84
BspPI	GGATC	2 cut(s)	174, 247
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	2 cut(s)	78, 79
BssMI	GATC	2 cut(s)	166, 239
BssNI	GRCGYC	1 cut(s)	138
Bst6I	CTCTTC	1 cut(s)	79
BstACI	GRCGYC	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	95
BstFNI	CGCG	1 cut(s)	161
BstKTI	GATC	2 cut(s)	169, 242
BstMBI	GATC	2 cut(s)	166, 239
BstMCI	CGRYCG	1 cut(s)	237
BstSCI	CCNGG	2 cut(s)	78, 79
BstSLI	GKGCMC	2 cut(s)	86, 294
BstUI	CGCG	1 cut(s)	161
BstV2I	GAAGAC	1 cut(s)	115
BsuRI	GGCC	2 cut(s)	7, 84
BtsCI	GGATG	1 cut(s)	95
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	109
Cfr13I	GGNCC	3 cut(s)	37, 82, 83
Cfr9I	CCCGGG	1 cut(s)	79
CseI	GACGC	1 cut(s)	146
CviJI	RGCY	7 cut(s)	7, 84, 111, 117, 191, 250, 269
CviKI_1	RGCY	7 cut(s)	7, 84, 111, 117, 191, 250, 269
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	2 cut(s)	168, 241
DpnII	GATC	2 cut(s)	166, 239
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
EciI	GGCGGA	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	37
Eco88I	CYCGRG	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	86
FaiI	YATR	1 cut(s)	143
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	82
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	267
GluI	GCNGC	1 cut(s)	267
GsuI	CTGGAG	1 cut(s)	161
HaeIII	GGCC	2 cut(s)	7, 84
HapII	CCGG	1 cut(s)	80
HgaI	GACGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	138
HinfI	GANTC	2 cut(s)	17, 218
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	4 cut(s)	171, 188, 239, 244
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	1 cut(s)	292
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	3 cut(s)	157, 268, 277
HpyCH4V	TGCA	1 cut(s)	292
HpyF3I	CTNAG	1 cut(s)	270
Hsp92I	GRCGYC	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	166, 239
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	4 cut(s)	93, 121, 191, 236
LweI	GCATC	1 cut(s)	193
MalI	GATC	2 cut(s)	168, 241
MboI	GATC	2 cut(s)	166, 239
MboII	GAAGA	2 cut(s)	66, 115
MhlI	GDGCHC	2 cut(s)	86, 294
MluCI	AATT	3 cut(s)	132, 198, 208
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	6 cut(s)	67, 82, 103, 185, 240, 271
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	2 cut(s)	80, 81
MvnI	CGCG	1 cut(s)	161
NciI	CCSGG	2 cut(s)	80, 81
NdeII	GATC	2 cut(s)	166, 239
NlaIV	GGNNCC	2 cut(s)	39, 84
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	39, 84
PspOMI	GGGCCC	1 cut(s)	82
PspPI	GGNCC	3 cut(s)	37, 82, 83
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	2 cut(s)	166, 239
Sau96I	GGNCC	3 cut(s)	37, 82, 83
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	2 cut(s)	80, 81
SduI	GDGCHC	2 cut(s)	86, 294
SetI	ASST	7 cut(s)	59, 74, 113, 119, 193, 282, 288
SfaNI	GCATC	1 cut(s)	193
SinI	GGWCC	1 cut(s)	37
SmaI	CCCGGG	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	3 cut(s)	132, 198, 208
SsiI	CCGC	3 cut(s)	105, 159, 266
StyD4I	CCNGG	2 cut(s)	78, 79
TaqI	TCGA	1 cut(s)	32
TaqII	GACCGA	1 cut(s)	223
TasI	AATT	3 cut(s)	132, 198, 208
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	1 cut(s)	218
TscAI	CASTG	1 cut(s)	267
TspGWI	ACGGA	1 cut(s)	50
TspMI	CCCGGG	1 cut(s)	79
TspRI	CASTG	1 cut(s)	267
VneI	GTGCAC	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	37
XmaI	CCCGGG	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.