pycom08g15380

Random slug protein 5-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Reverse (-)
15006648 .. 15007109
462 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 348 bp
ATGAGTGCGGGAATAAAGAAATCCCCTTCAAATGGCTCTGAGAAGATATTATCATGTGAAGAGCAGCAGGCAAAGATTAACGAAGTGAAAAAGCTGATAGGACCGTTGCCTGATAAGTTGTCCATCTATTGTTCGGATGCATCCATCTCAAGGTATCTGAGGGCGAGAAATTGGAATGTCAAGAAGGCAACCAAAATGTTAAAAGATACCTTAAAGTGGAGGTCAGAATACAAACCGGAGGAGATTCGTTGGGTATGCTTCTTTCATAGCCTCATAGTCAGAATTCATCCAGATTGTACCCTTTCATTCTTCTTAGAACAGTATCCATCACTCCTTAGGTTTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

116

Amino Acids

13.44

Weight (kDa)

9.48

Isoelectric Point (pI)

52.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO_N PF03765 45 - 69 1.7e-08 CRAL/TRIO, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 8
AcsI RAATTY 1 cut(s) 282
AfaI GTAC 1 cut(s) 298
AfiI CCNNNNNNNGG 3 cut(s) 32, 150, 216
AgsI TTSAA 1 cut(s) 30
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
ApeKI GCWGC 1 cut(s) 64
ApoI RAATTY 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 101
AvaII GGWCC 1 cut(s) 101
AxyI CCTNAGG 1 cut(s) 335
BbvI GCAGC 1 cut(s) 76
BccI CCATC 3 cut(s) 131, 152, 334
BciVI GTATCC 1 cut(s) 333
BfuI GTATCC 1 cut(s) 333
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 101
BmsI GCATC 2 cut(s) 127, 149
BpuEI CTTGAG 1 cut(s) 133
BsaWI WCCGGW 1 cut(s) 235
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 150, 216
Bse21I CCTNAGG 1 cut(s) 335
BseGI GGATG 3 cut(s) 140, 142, 286
BseLI CCNNNNNNNGG 3 cut(s) 32, 150, 216
BseMII CTCAG 2 cut(s) 30, 149
BseRI GAGGAG 1 cut(s) 254
BseXI GCAGC 1 cut(s) 76
BsiSI CCGG 1 cut(s) 236
BslI CCNNNNNNNGG 3 cut(s) 32, 150, 216
BspACI CCGC 1 cut(s) 8
BspCNI CTCAG 2 cut(s) 31, 150
BspQI GCTCTTC 1 cut(s) 54
Bst4CI ACNGT 2 cut(s) 105, 321
Bst6I CTCTTC 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 4 cut(s) 39, 158, 313, 335
BstF5I GGATG 3 cut(s) 140, 142, 286
BstV1I GCAGC 1 cut(s) 76
Bsu36I CCTNAGG 1 cut(s) 335
BsuI GTATCC 1 cut(s) 333
BtsCI GGATG 3 cut(s) 140, 142, 286
Cac8I GCNNGC 1 cut(s) 69
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 1 cut(s) 297
CviAII CATG 1 cut(s) 54
CviJI RGCY 3 cut(s) 36, 94, 270
CviKI_1 RGCY 3 cut(s) 36, 94, 270
CviQI GTAC 1 cut(s) 297
DdeI CTNAG 4 cut(s) 39, 158, 313, 335
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 101
Eco81I CCTNAGG 1 cut(s) 335
EcoRI GAATTC 1 cut(s) 282
EcoT22I ATGCAT 1 cut(s) 142
FaeI CATG 1 cut(s) 57
FaiI YATR 4 cut(s) 55, 256, 267, 275
FatI CATG 1 cut(s) 53
Fnu4HI GCNGC 1 cut(s) 65
FokI GGATG 3 cut(s) 127, 149, 273
Fsp4HI GCNGC 1 cut(s) 65
GluI GCNGC 1 cut(s) 65
HapII CCGG 1 cut(s) 236
Hin1II CATG 1 cut(s) 57
HinfI GANTC 1 cut(s) 244
HpaII CCGG 1 cut(s) 236
Hpy188I TCNGA 5 cut(s) 40, 136, 159, 226, 281
Hpy188III TCNNGA 2 cut(s) 181, 290
HpyAV CCTTC 2 cut(s) 36, 178
HpyCH4III ACNGT 2 cut(s) 105, 321
HpyCH4V TGCA 1 cut(s) 140
HpyF3I CTNAG 4 cut(s) 39, 158, 313, 335
Hsp92II CATG 1 cut(s) 57
LguI GCTCTTC 1 cut(s) 54
LpnPI CCDG 4 cut(s) 53, 123, 249, 303
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 2 cut(s) 127, 149
MboII GAAGA 3 cut(s) 55, 71, 301
MluCI AATT 2 cut(s) 169, 282
MnlI CCTC 4 cut(s) 153, 213, 232, 281
Mph1103I ATGCAT 1 cut(s) 142
MseI TTAA 3 cut(s) 78, 200, 212
MspI CCGG 1 cut(s) 236
NlaIII CATG 1 cut(s) 57
NsiI ATGCAT 1 cut(s) 142
PciSI GCTCTTC 1 cut(s) 54
PfeI GAWTC 1 cut(s) 244
PkrI GCNGC 1 cut(s) 66
PspPI GGNCC 1 cut(s) 101
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 3 cut(s) 78, 200, 212
SatI GCNGC 1 cut(s) 65
Sau96I GGNCC 1 cut(s) 101
SetI ASST 5 cut(s) 96, 155, 212, 224, 341
SfaNI GCATC 2 cut(s) 127, 149
SgeI CNNG 9 cut(s) 21, 66, 80, 122, 162, 177, 193, 248, 302
SinI GGWCC 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 148
SmoI CTYRAG 1 cut(s) 148
Sse9I AATT 2 cut(s) 169, 282
SsiI CCGC 1 cut(s) 8
TaaI ACNGT 2 cut(s) 105, 321
TasI AATT 2 cut(s) 169, 282
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 3 cut(s) 78, 200, 212
Tru9I TTAA 3 cut(s) 78, 200, 212
TseI GCWGC 1 cut(s) 64
TspDTI ATGAA 3 cut(s) 254, 275, 294
VpaK11BI GGWCC 1 cut(s) 101
XapI RAATTY 1 cut(s) 282
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.