pycom08g15870

Conserved oligomeric Golgi complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
N/A
Physical Location & Seq
Forward (+)
15678659 .. 15678966
308 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 258 bp
ATGTCGGGCCCGGATCTTCTCCACCACTCCATCACCCTCCACCTCTCTAGTAAGCTCGGATCCCTCGCCTCCGACGACCCCGAGCGCCCCGATCTCGGCAAGGCCGCTCAGCTCTATTACGAGATCTTAGCTCTCTACAACGAATGCGACCTCACCGGCATTGATGTGGTCGATTCACCGGCATTGATGTGGTCGATTCCGAACTTGAGTGGGTCAAAGAGACCGGAGACAAGTTGCGTACGGAGGAGAGAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COG5

Protein Analysis

86

Amino Acids

9.31

Weight (kDa)

5.14

Isoelectric Point (pI)

60.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 107
AciI CCGC 1 cut(s) 105
AclWI GGATC 3 cut(s) 21, 54, 67
AfaI GTAC 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 95
AluBI AGCT 3 cut(s) 55, 112, 131
AluI AGCT 3 cut(s) 55, 112, 131
Alw26I GTCTC 2 cut(s) 214, 221
AlwI GGATC 3 cut(s) 21, 54, 67
Ama87I CYCGRG 1 cut(s) 80
AoxI GGCC 2 cut(s) 7, 102
ApaI GGGCCC 1 cut(s) 11
AspLEI GCGC 1 cut(s) 87
AspS9I GGNCC 2 cut(s) 7, 8
AsuC2I CCSGG 1 cut(s) 11
AsuHPI GGTGA 3 cut(s) 25, 145, 168
AvaI CYCGRG 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 11
BamHI GGATCC 1 cut(s) 59
BanII GRGCYC 1 cut(s) 11
BccI CCATC 1 cut(s) 38
BcnI CCSGG 1 cut(s) 11
BcoDI GTCTC 2 cut(s) 214, 221
BfaI CTAG 1 cut(s) 48
BfoI RGCGCY 1 cut(s) 88
BglII AGATCT 1 cut(s) 123
BisI GCNGC 1 cut(s) 105
BlpI GCTNAGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 106
Bme1390I CCNGG 1 cut(s) 11
BmeT110I CYCGRG 1 cut(s) 80
BmgT120I GGNCC 2 cut(s) 7, 8
BmiI GGNNCC 2 cut(s) 9, 61
BmrFI CCNGG 1 cut(s) 11
Bpu1102I GCTNAGC 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 226
BpuMI CCSGG 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 214
BsaWI WCCGGW 1 cut(s) 223
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse118I RCCGGY 2 cut(s) 155, 178
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMII CTCAG 1 cut(s) 122
BseSI GKGCMC 1 cut(s) 11
BshFI GGCC 2 cut(s) 9, 104
BsiHKCI CYCGRG 1 cut(s) 80
BsiSI CCGG 4 cut(s) 11, 156, 179, 224
BsiWI CGTACG 1 cut(s) 238
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 2 cut(s) 214, 221
BsmI GAATGC 1 cut(s) 149
BsnI GGCC 2 cut(s) 9, 104
Bso31I GGTCTC 1 cut(s) 214
BsoBI CYCGRG 1 cut(s) 80
Bsp120I GGGCCC 1 cut(s) 7
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 4 cut(s) 13, 59, 91, 123
Bsp1720I GCTNAGC 1 cut(s) 108
BspACI CCGC 1 cut(s) 105
BspANI GGCC 2 cut(s) 9, 104
BspCNI CTCAG 1 cut(s) 121
BspLI GGNNCC 2 cut(s) 9, 61
BspPI GGATC 3 cut(s) 21, 54, 67
BspTNI GGTCTC 1 cut(s) 214
BsrBI CCGCTC 1 cut(s) 107
BsrFI RCCGGY 2 cut(s) 155, 178
BssAI RCCGGY 2 cut(s) 155, 178
BssMI GATC 4 cut(s) 13, 59, 91, 123
BstDEI CTNAG 2 cut(s) 108, 127
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 4 cut(s) 16, 62, 94, 126
BstMAI GTCTC 2 cut(s) 214, 221
BstMBI GATC 4 cut(s) 13, 59, 91, 123
BstSCI CCNGG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 11
BstX2I RGATCY 3 cut(s) 13, 59, 123
BstYI RGATCY 3 cut(s) 13, 59, 123
BsuRI GGCC 2 cut(s) 9, 104
CfoI GCGC 1 cut(s) 87
Cfr10I RCCGGY 2 cut(s) 155, 178
Cfr13I GGNCC 2 cut(s) 7, 8
Csp6I GTAC 1 cut(s) 239
CviJI RGCY 5 cut(s) 9, 55, 104, 112, 131
CviKI_1 RGCY 5 cut(s) 9, 55, 104, 112, 131
CviQI GTAC 1 cut(s) 239
DdeI CTNAG 2 cut(s) 108, 127
DpnI GATC 4 cut(s) 15, 61, 93, 125
DpnII GATC 4 cut(s) 13, 59, 91, 123
Eco24I GRGCYC 1 cut(s) 11
Eco31I GGTCTC 1 cut(s) 214
Eco88I CYCGRG 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 11
Fnu4HI GCNGC 1 cut(s) 105
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 1 cut(s) 48
GlaI GCGC 1 cut(s) 86
GluI GCNGC 1 cut(s) 105
HaeII RGCGCY 1 cut(s) 88
HaeIII GGCC 2 cut(s) 9, 104
HapII CCGG 4 cut(s) 11, 156, 179, 224
HhaI GCGC 1 cut(s) 87
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HinfI GANTC 2 cut(s) 173, 196
HpaII CCGG 4 cut(s) 11, 156, 179, 224
HphI GGTGA 3 cut(s) 25, 145, 168
Hpy188I TCNGA 3 cut(s) 59, 73, 201
Hpy99I CGWCG 1 cut(s) 77
HpyF3I CTNAG 2 cut(s) 108, 127
HspAI GCGC 1 cut(s) 85
Kzo9I GATC 4 cut(s) 13, 59, 91, 123
LpnPI CCDG 4 cut(s) 24, 169, 192, 237
MaeI CTAG 1 cut(s) 48
MalI GATC 4 cut(s) 15, 61, 93, 125
MbiI CCGCTC 1 cut(s) 107
MboI GATC 4 cut(s) 13, 59, 91, 123
MboII GAAGA 1 cut(s) 8
MflI RGATCY 3 cut(s) 13, 59, 123
MhlI GDGCHC 1 cut(s) 11
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 7 cut(s) 47, 53, 74, 79, 161, 237, 244
MslI CAYNNNNRTG 2 cut(s) 164, 187
MspI CCGG 4 cut(s) 11, 156, 179, 224
MspR9I CCNGG 1 cut(s) 11
Mva1269I GAATGC 1 cut(s) 149
NciI CCSGG 1 cut(s) 11
NdeII GATC 4 cut(s) 13, 59, 91, 123
NlaIV GGNNCC 2 cut(s) 9, 61
NmeAIII GCCGAG 1 cut(s) 75
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PctI GAATGC 1 cut(s) 149
PfeI GAWTC 2 cut(s) 173, 196
Pfl23II CGTACG 1 cut(s) 238
PkrI GCNGC 1 cut(s) 106
PspLI CGTACG 1 cut(s) 238
PspN4I GGNNCC 2 cut(s) 9, 61
PspOMI GGGCCC 1 cut(s) 7
PspPI GGNCC 2 cut(s) 7, 8
PsuI RGATCY 3 cut(s) 13, 59, 123
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
RseI CAYNNNNRTG 2 cut(s) 164, 187
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 4 cut(s) 13, 59, 91, 123
Sau96I GGNCC 2 cut(s) 7, 8
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 1 cut(s) 11
SetI ASST 5 cut(s) 45, 57, 114, 133, 153
SmiMI CAYNNNNRTG 2 cut(s) 164, 187
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
SsiI CCGC 1 cut(s) 105
SspMI CTAG 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 9
TaqI TCGA 2 cut(s) 171, 194
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 2 cut(s) 173, 196
TspGWI ACGGA 1 cut(s) 256
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.